RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PRKAR2BP31323 418 aa11.98□□□□□ -0.49
VCAN-210ENST00000513960 CD163L1Q9NR16 1453 aa11.97□□□□□ -0.49
VCAN-210ENST00000513960 ARHGEF40Q8TER5 1519 aa11.97□□□□□ -0.49
VCAN-210ENST00000513960 ATF7IPQ6VMQ6 1270 aa11.97□□□□□ -0.49
VCAN-210ENST00000513960 MCTP1Q6DN14 999 aa11.97□□□□□ -0.49
VCAN-210ENST00000513960 PODXL2Q9NZ53 605 aa11.97□□□□□ -0.49
VCAN-210ENST00000513960 ADGRB2O60241 1585 aa11.97□□□□□ -0.49
VCAN-210ENST00000513960 TRIM27P14373 513 aa11.96□□□□□ -0.49
VCAN-210ENST00000513960 FBLN1P23142 703 aa11.96□□□□□ -0.49
VCAN-210ENST00000513960 PRDM10Q9NQV6 1147 aa11.96□□□□□ -0.49
VCAN-210ENST00000513960 POLKQ9UBT6 870 aa11.96□□□□□ -0.49
VCAN-210ENST00000513960 TSPOAP1O95153 1857 aa11.96□□□□□ -0.49
VCAN-210ENST00000513960 CALD1Q05682 793 aaKnown RBP11.96□□□□□ -0.49
VCAN-210ENST00000513960 ANKRD45Q5TZF3 282 aa11.96□□□□□ -0.49
VCAN-210ENST00000513960 CAVIN1Q6NZI2 390 aaKnown RBP11.96□□□□□ -0.49
VCAN-210ENST00000513960 TXNDC2Q86VQ3 553 aa11.96□□□□□ -0.49
VCAN-210ENST00000513960 MPNDQ8N594 471 aa11.96□□□□□ -0.49
VCAN-210ENST00000513960 NOB1Q9ULX3 412 aaKnown RBP11.96□□□□□ -0.49
VCAN-210ENST00000513960 A2ML1A8K2U0 1454 aa11.96□□□□□ -0.5
VCAN-210ENST00000513960 APBB1O00213 710 aa11.96□□□□□ -0.5
VCAN-210ENST00000513960 WASLO00401 505 aaPredicted RBP11.96□□□□□ -0.5
VCAN-210ENST00000513960 KIF16BQ96L93 1317 aa11.96□□□□□ -0.5
VCAN-210ENST00000513960 HMOX1P09601 288 aa11.95□□□□□ -0.5
VCAN-210ENST00000513960 SSFA2P28290 1259 aa11.95□□□□□ -0.5
VCAN-210ENST00000513960 COL3A1P02461 1466 aaPredicted RBP11.95□□□□□ -0.5
VCAN-210ENST00000513960 XPCQ01831 940 aaPredicted RBP11.95□□□□□ -0.5
VCAN-210ENST00000513960 SKOR2Q2VWA4 1001 aaPredicted RBP11.95□□□□□ -0.5
VCAN-210ENST00000513960 PNPLA6Q8IY17 1366 aa11.95□□□□□ -0.5
VCAN-210ENST00000513960 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.94□□□□□ -0.5
VCAN-210ENST00000513960 PDCL3Q9H2J4 239 aa11.94□□□□□ -0.5
VCAN-210ENST00000513960 NLRP1Q9C000 1473 aa11.94□□□□□ -0.5
VCAN-210ENST00000513960 AGLP35573 1532 aa11.94□□□□□ -0.5
VCAN-210ENST00000513960 CCDC173Q0VFZ6 552 aa11.94□□□□□ -0.5
VCAN-210ENST00000513960 CLTCQ00610 1675 aaKnown RBP11.94□□□□□ -0.5
VCAN-210ENST00000513960 FOXD4L6Q3SYB3 417 aaPredicted RBP11.94□□□□□ -0.5
VCAN-210ENST00000513960 FOXD4L3Q6VB84 417 aaPredicted RBP11.94□□□□□ -0.5
VCAN-210ENST00000513960 COG3Q96JB2 828 aa11.94□□□□□ -0.5
VCAN-210ENST00000513960 ZSCAN30Q86W11 494 aa11.94□□□□□ -0.5
VCAN-210ENST00000513960 RNF214Q8ND24 703 aa11.94□□□□□ -0.5
VCAN-210ENST00000513960 RBM42Q9BTD8 480 aaKnown RBP11.94□□□□□ -0.5
VCAN-210ENST00000513960 C1orf115Q9H7X2 142 aa11.94□□□□□ -0.5
VCAN-210ENST00000513960 DIP2BQ9P265 1576 aa11.93□□□□□ -0.5
VCAN-210ENST00000513960 ATP7BP35670 1465 aa11.93□□□□□ -0.5
VCAN-210ENST00000513960 NUDT16Q96DE0 195 aaKnown RBP11.93□□□□□ -0.5
VCAN-210ENST00000513960 EMILIN1Q9Y6C2 1016 aa11.93□□□□□ -0.5
VCAN-210ENST00000513960 PLCB2Q00722 1185 aa11.93□□□□□ -0.5
VCAN-210ENST00000513960 NME9Q86XW9 330 aa11.93□□□□□ -0.5
VCAN-210ENST00000513960 CCDC61Q9Y6R9 512 aa11.93□□□□□ -0.5
VCAN-210ENST00000513960 NFE2L2Q16236 605 aa11.93□□□□□ -0.5
VCAN-210ENST00000513960 DLC1Q96QB1 1528 aa11.92□□□□□ -0.5
VCAN-210ENST00000513960 ALDH1L2Q3SY69 923 aa11.92□□□□□ -0.5
VCAN-210ENST00000513960 TMEM57Q8N5G2 664 aa11.92□□□□□ -0.5
VCAN-210ENST00000513960 PPIP5K1Q6PFW1 1433 aa11.92□□□□□ -0.5
VCAN-210ENST00000513960 UQCRHLA0A096LP55 91 aa11.92□□□□□ -0.5
VCAN-210ENST00000513960 UQCRHP07919 91 aa11.92□□□□□ -0.5
VCAN-210ENST00000513960 ANKRD26Q9UPS8 1709 aa11.92□□□□□ -0.5
VCAN-210ENST00000513960 ELL2O00472 640 aaPredicted RBP11.91□□□□□ -0.5
VCAN-210ENST00000513960 ZNF428Q96B54 188 aa11.91□□□□□ -0.5
VCAN-210ENST00000513960 EDC4Q6P2E9 1401 aaKnown RBP11.91□□□□□ -0.5
VCAN-210ENST00000513960 NOL8Q76FK4 1167 aaKnown RBP11.91□□□□□ -0.5
VCAN-210ENST00000513960 ZMYM3Q14202 1370 aa11.91□□□□□ -0.5
VCAN-210ENST00000513960 REREQ9P2R6 1566 aa11.91□□□□□ -0.5
VCAN-210ENST00000513960 GNAI1P63096 354 aa11.91□□□□□ -0.5
VCAN-210ENST00000513960 HDAC1Q13547 482 aaPredicted RBP11.91□□□□□ -0.5
VCAN-210ENST00000513960 SPATA31D1Q6ZQQ2 1576 aa11.91□□□□□ -0.5
VCAN-210ENST00000513960 LMOD3Q0VAK6 560 aa11.9□□□□□ -0.5
VCAN-210ENST00000513960 PHACTR3Q96KR7 559 aa11.9□□□□□ -0.5
VCAN-210ENST00000513960 CHMP4BQ9H444 224 aaKnown RBP11.9□□□□□ -0.5
VCAN-210ENST00000513960 METP08581 1390 aa11.9□□□□□ -0.5
VCAN-210ENST00000513960 RIMBP3CA6NJZ7 1639 aa11.9□□□□□ -0.5
VCAN-210ENST00000513960 RIMBP3BA6NNM3 1639 aa11.9□□□□□ -0.5
VCAN-210ENST00000513960 RIMBP3Q9UFD9 1639 aa11.9□□□□□ -0.5
VCAN-210ENST00000513960 THUMPD2Q9BTF0 503 aaKnown RBP11.9□□□□□ -0.5
VCAN-210ENST00000513960 ZNF692Q9BU19 519 aaPredicted RBP11.9□□□□□ -0.5
VCAN-210ENST00000513960 ZRANB1Q9UGI0 708 aa11.9□□□□□ -0.5
VCAN-210ENST00000513960 ISY1Q9ULR0 285 aaKnown RBP11.9□□□□□ -0.5
VCAN-210ENST00000513960 ZHX1Q9UKY1 873 aaPredicted RBP11.89□□□□□ -0.51
VCAN-210ENST00000513960 PTMSP20962 102 aa11.89□□□□□ -0.51
VCAN-210ENST00000513960 RRS1Q15050 365 aaKnown RBP11.89□□□□□ -0.51
VCAN-210ENST00000513960 KIF20BQ96Q89 1820 aa11.89□□□□□ -0.51
VCAN-210ENST00000513960 FAM135BQ49AJ0 1406 aa11.89□□□□□ -0.51
VCAN-210ENST00000513960 K7ELQ4 463 aaPredicted RBP11.88□□□□□ -0.51
VCAN-210ENST00000513960 PRPF40AO75400 957 aaKnown RBP11.88□□□□□ -0.51
VCAN-210ENST00000513960 IL13P35225 146 aa11.88□□□□□ -0.51
VCAN-210ENST00000513960 NCKAP5LQ9HCH0 1330 aa11.88□□□□□ -0.51
VCAN-210ENST00000513960 ZBTB40Q9NUA8 1239 aa11.88□□□□□ -0.51
VCAN-210ENST00000513960 LRRC7Q96NW7 1537 aa11.88□□□□□ -0.51
VCAN-210ENST00000513960 IFT57Q9NWB7 429 aa11.87□□□□□ -0.51
VCAN-210ENST00000513960 RBM27Q9P2N5 1060 aaKnown RBP11.87□□□□□ -0.51
VCAN-210ENST00000513960 CPSF1Q10570 1443 aaKnown RBP11.87□□□□□ -0.51
VCAN-210ENST00000513960 SIRT1Q96EB6 747 aa11.87□□□□□ -0.51
VCAN-210ENST00000513960 TNRQ92752 1358 aa11.87□□□□□ -0.51
VCAN-210ENST00000513960 SMC5Q8IY18 1101 aa11.86□□□□□ -0.51
VCAN-210ENST00000513960 NUTM2FA1L443 756 aa11.86□□□□□ -0.51
VCAN-210ENST00000513960 PLEKHG5O94827 1062 aa11.86□□□□□ -0.51
VCAN-210ENST00000513960 GAS2L2Q8NHY3 880 aa11.86□□□□□ -0.51
VCAN-210ENST00000513960 AATKQ6ZMQ8 1374 aa11.86□□□□□ -0.51
VCAN-210ENST00000513960 VAMP4O75379 141 aa11.86□□□□□ -0.51
VCAN-210ENST00000513960 CD2BP2O95400 341 aaKnown RBP11.86□□□□□ -0.51
VCAN-210ENST00000513960 RAB3GAP1Q15042 981 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms