RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 C1orf141Q5JVX7 400 aa10.16□□□□□ -0.78
LIMCH1-216ENST00000512820 KIF3AQ9Y496 699 aa10.16□□□□□ -0.78
LIMCH1-216ENST00000512820 FYB1O15117 783 aa10.16□□□□□ -0.78
LIMCH1-216ENST00000512820 SMC5Q8IY18 1101 aa10.16□□□□□ -0.78
LIMCH1-216ENST00000512820 NME9Q86XW9 330 aa10.16□□□□□ -0.78
LIMCH1-216ENST00000512820 SNX21Q969T3 373 aa10.16□□□□□ -0.78
LIMCH1-216ENST00000512820 MAP7D2Q96T17 732 aa10.16□□□□□ -0.78
LIMCH1-216ENST00000512820 NLRP6P59044 892 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 FAM69CQ0P6D2 419 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 G3BP1Q13283 466 aaKnown RBP eCLIP10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 MCM10Q7L590 875 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 BAG4O95429 457 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 TPM4P67936 248 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 RNF20Q5VTR2 975 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 NUTM2GQ5VZR2 741 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 MBIPQ9NS73 344 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 EXOC6BQ9Y2D4 811 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 CCDC9Q9Y3X0 531 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 ADGBQ8N7X0 1667 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 SYCE3A1L190 88 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 BECN2A8MW95 431 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 FBLN1P23142 703 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 GORABQ5T7V8 394 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 BICD2Q8TD16 824 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 ZBTB40Q9NUA8 1239 aa10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 WDR33Q9C0J8 1336 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-216ENST00000512820 FIBPO43427 364 aa10.15□□□□□ -0.79
LIMCH1-216ENST00000512820 NUDT16Q96DE0 195 aaKnown RBP10.15□□□□□ -0.79
LIMCH1-216ENST00000512820 MAGI2Q86UL8 1455 aa10.15□□□□□ -0.79
LIMCH1-216ENST00000512820 LETM1O95202 739 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-216ENST00000512820 CLCN1P35523 988 aa10.14□□□□□ -0.79
LIMCH1-216ENST00000512820 MPNDQ8N594 471 aa10.14□□□□□ -0.79
LIMCH1-216ENST00000512820 MIS18AQ9NYP9 233 aa10.14□□□□□ -0.79
LIMCH1-216ENST00000512820 CCDC61Q9Y6R9 512 aa10.14□□□□□ -0.79
LIMCH1-216ENST00000512820 SF3A1Q15459 793 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-216ENST00000512820 TRMT2AQ8IZ69 625 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-216ENST00000512820 CLASRPQ8N2M8 674 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-216ENST00000512820 ARHGAP45Q92619 1136 aa10.14□□□□□ -0.79
LIMCH1-216ENST00000512820 TARBP1Q13395 1621 aaKnown RBP10.14□□□□□ -0.79
LIMCH1-216ENST00000512820 ZNF521Q96K83 1311 aa10.14□□□□□ -0.79
LIMCH1-216ENST00000512820 NEXNQ0ZGT2 675 aa10.13□□□□□ -0.79
LIMCH1-216ENST00000512820 RBM42Q9BTD8 480 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-216ENST00000512820 KLHL40Q2TBA0 621 aa10.13□□□□□ -0.79
LIMCH1-216ENST00000512820 MTERF4Q7Z6M4 381 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-216ENST00000512820 ZNF330Q9Y3S2 320 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-216ENST00000512820 MAP4K4O95819 1239 aaPredicted RBP10.13□□□□□ -0.79
LIMCH1-216ENST00000512820 SRCIN1Q9C0H9 1055 aa10.13□□□□□ -0.79
LIMCH1-216ENST00000512820 EIF4G3O43432 1585 aaKnown RBP10.13□□□□□ -0.79
LIMCH1-216ENST00000512820 HDGFL1Q5TGJ6 251 aa10.13□□□□□ -0.79
LIMCH1-216ENST00000512820 IL1RAPL2Q9NP60 686 aa10.13□□□□□ -0.79
LIMCH1-216ENST00000512820 ABCC10Q5T3U5 1492 aa10.13□□□□□ -0.79
LIMCH1-216ENST00000512820 FAM83GA6ND36 823 aa10.12□□□□□ -0.79
LIMCH1-216ENST00000512820 TTC22Q5TAA0 569 aa10.12□□□□□ -0.79
LIMCH1-216ENST00000512820 ZNF592Q92610 1267 aa10.12□□□□□ -0.79
LIMCH1-216ENST00000512820 CD109Q6YHK3 1445 aa10.12□□□□□ -0.79
LIMCH1-216ENST00000512820 MRPL50Q8N5N7 158 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-216ENST00000512820 DDX58O95786 925 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-216ENST00000512820 SASS6Q6UVJ0 657 aa10.12□□□□□ -0.79
LIMCH1-216ENST00000512820 PUS7Q96PZ0 661 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-216ENST00000512820 CDK11BP21127 795 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-216ENST00000512820 UPF3BQ9BZI7 483 aaKnown RBP10.12□□□□□ -0.79
LIMCH1-216ENST00000512820 MX1P20591 662 aa10.11□□□□□ -0.79
LIMCH1-216ENST00000512820 BCORL1Q5H9F3 1711 aa10.11□□□□□ -0.79
LIMCH1-216ENST00000512820 UQCRHLA0A096LP55 91 aa10.11□□□□□ -0.79
LIMCH1-216ENST00000512820 F6X3S4 739 aa10.11□□□□□ -0.79
LIMCH1-216ENST00000512820 UQCRHP07919 91 aa10.11□□□□□ -0.79
LIMCH1-216ENST00000512820 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-216ENST00000512820 RAB3GAP1Q15042 981 aa10.11□□□□□ -0.79
LIMCH1-216ENST00000512820 PSMA5P28066 241 aa10.11□□□□□ -0.79
LIMCH1-216ENST00000512820 RRAGDQ9NQL2 400 aaPredicted RBP10.11□□□□□ -0.79
LIMCH1-216ENST00000512820 MAST1Q9Y2H9 1570 aa10.11□□□□□ -0.79
LIMCH1-216ENST00000512820 FBXO31Q5XUX0 539 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-216ENST00000512820 VAMP4O75379 141 aa10.1□□□□□ -0.79
LIMCH1-216ENST00000512820 TPM3P06753 285 aa10.1□□□□□ -0.79
LIMCH1-216ENST00000512820 HMGN5P82970 282 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-216ENST00000512820 AIMP1Q12904 312 aaKnown RBP10.1□□□□□ -0.79
LIMCH1-216ENST00000512820 TAF7LQ5H9L4 462 aa10.1□□□□□ -0.79
LIMCH1-216ENST00000512820 TSPYL6Q8N831 410 aa10.1□□□□□ -0.79
LIMCH1-216ENST00000512820 SRGAP3O43295 1099 aa10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 NUTM1Q86Y26 1132 aa10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 C8orf58Q8NAV2 365 aa10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 FSD1Q9BTV5 496 aa10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 ARHGEF5Q12774 1597 aa10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 WASLO00401 505 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 SDSP20132 328 aa10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 RBM25P49756 843 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 CYP46A1Q9Y6A2 500 aa10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 XPCQ01831 940 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 CHMP4CQ96CF2 233 aa10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 RBM27Q9P2N5 1060 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 PDCP20941 246 aa10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 ZSCAN23Q3MJ62 389 aa10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 C16orf71Q8IYS4 520 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 SPC24Q8NBT2 197 aa10.09□□□□□ -0.79
LIMCH1-216ENST00000512820 FOSBP53539 338 aa10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 PSME1Q06323 249 aa10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 CWC27Q6UX04 472 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 ABTB2Q8N961 1025 aa10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 POLKQ9UBT6 870 aa10.08□□□□□ -0.8
LIMCH1-216ENST00000512820 TRIM35Q9UPQ4 493 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms