RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 SRPK2P78362 688 aaKnown RBP11.64□□□□□ -0.55
PDGFRA-208ENST00000509490 GGNBP2Q9H3C7 697 aa11.64□□□□□ -0.55
PDGFRA-208ENST00000509490 MCM4P33991 863 aa11.64□□□□□ -0.55
PDGFRA-208ENST00000509490 DLG5Q8TDM6 1919 aa11.64□□□□□ -0.55
PDGFRA-208ENST00000509490 RAPGEF3O95398 923 aa11.63□□□□□ -0.55
PDGFRA-208ENST00000509490 NFE2L2Q16236 605 aa11.63□□□□□ -0.55
PDGFRA-208ENST00000509490 CDK19Q9BWU1 502 aa11.63□□□□□ -0.55
PDGFRA-208ENST00000509490 TOPAZ1Q8N9V7 1692 aa11.63□□□□□ -0.55
PDGFRA-208ENST00000509490 NALCNQ8IZF0 1738 aa11.63□□□□□ -0.55
PDGFRA-208ENST00000509490 ZBTB7BO15156 539 aaPredicted RBP11.62□□□□□ -0.55
PDGFRA-208ENST00000509490 MRPL50Q8N5N7 158 aaKnown RBP11.62□□□□□ -0.55
PDGFRA-208ENST00000509490 POGKQ9P215 609 aa11.62□□□□□ -0.55
PDGFRA-208ENST00000509490 POLKQ9UBT6 870 aa11.62□□□□□ -0.55
PDGFRA-208ENST00000509490 RGPD1P0DJD0 1748 aa11.62□□□□□ -0.55
PDGFRA-208ENST00000509490 ITSN1Q15811 1721 aa11.62□□□□□ -0.55
PDGFRA-208ENST00000509490 DIP2BQ9P265 1576 aa11.62□□□□□ -0.55
PDGFRA-208ENST00000509490 ITPRIPQ8IWB1 547 aa11.61□□□□□ -0.55
PDGFRA-208ENST00000509490 CFAP44Q96MT7 982 aa11.61□□□□□ -0.55
PDGFRA-208ENST00000509490 U2SURPO15042 1029 aaKnown RBP11.61□□□□□ -0.55
PDGFRA-208ENST00000509490 VAMP4O75379 141 aa11.61□□□□□ -0.55
PDGFRA-208ENST00000509490 PTMSP20962 102 aa11.61□□□□□ -0.55
PDGFRA-208ENST00000509490 CLEC17AQ6ZS10 378 aa11.61□□□□□ -0.55
PDGFRA-208ENST00000509490 CHD1LQ86WJ1 897 aa11.61□□□□□ -0.55
PDGFRA-208ENST00000509490 IL13P35225 146 aa11.61□□□□□ -0.55
PDGFRA-208ENST00000509490 GNAI1P63096 354 aa11.61□□□□□ -0.55
PDGFRA-208ENST00000509490 RIMS2Q9UQ26 1411 aa11.6□□□□□ -0.55
PDGFRA-208ENST00000509490 LMOD3Q0VAK6 560 aa11.6□□□□□ -0.55
PDGFRA-208ENST00000509490 DDX11L8A8MPP1 907 aa11.6□□□□□ -0.55
PDGFRA-208ENST00000509490 MINK1Q8N4C8 1332 aaPredicted RBP11.59□□□□□ -0.55
PDGFRA-208ENST00000509490 SLKQ9H2G2 1235 aaPredicted RBP11.58□□□□□ -0.55
PDGFRA-208ENST00000509490 CABP1Q9NZU7 370 aa11.58□□□□□ -0.55
PDGFRA-208ENST00000509490 TAOK2Q9UL54 1235 aa11.58□□□□□ -0.55
PDGFRA-208ENST00000509490 HSCBQ8IWL3 235 aa11.58□□□□□ -0.56
PDGFRA-208ENST00000509490 PRKAR2BP31323 418 aa11.58□□□□□ -0.56
PDGFRA-208ENST00000509490 KIF2CQ99661 725 aa11.58□□□□□ -0.56
PDGFRA-208ENST00000509490 KIAA0232Q92628 1395 aa11.57□□□□□ -0.56
PDGFRA-208ENST00000509490 API5Q9BZZ5 524 aaKnown RBP11.57□□□□□ -0.56
PDGFRA-208ENST00000509490 STK26Q9P289 416 aa11.56□□□□□ -0.56
PDGFRA-208ENST00000509490 MFAP1P55081 439 aaKnown RBP11.56□□□□□ -0.56
PDGFRA-208ENST00000509490 RGS12O14924 1447 aa11.56□□□□□ -0.56
PDGFRA-208ENST00000509490 N4BP2Q86UW6 1770 aaPredicted RBP11.56□□□□□ -0.56
PDGFRA-208ENST00000509490 IBTKQ9P2D0 1353 aaPredicted RBP11.56□□□□□ -0.56
PDGFRA-208ENST00000509490 HAP1P54257 671 aaPredicted RBP11.55□□□□□ -0.56
PDGFRA-208ENST00000509490 RAB3GAP1Q15042 981 aa11.55□□□□□ -0.56
PDGFRA-208ENST00000509490 NUTM2DQ5VT03 806 aaPredicted RBP11.55□□□□□ -0.56
PDGFRA-208ENST00000509490 WASLO00401 505 aaPredicted RBP11.55□□□□□ -0.56
PDGFRA-208ENST00000509490 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.55□□□□□ -0.56
PDGFRA-208ENST00000509490 GOLGA6L3A6NEY3 463 aa11.55□□□□□ -0.56
PDGFRA-208ENST00000509490 INTS3Q68E01 1043 aaKnown RBP11.55□□□□□ -0.56
PDGFRA-208ENST00000509490 ATP10DQ9P241 1426 aa11.54□□□□□ -0.56
PDGFRA-208ENST00000509490 USP54Q70EL1 1684 aa11.54□□□□□ -0.56
PDGFRA-208ENST00000509490 RIMS1Q86UR5 1692 aaKnown RBP11.54□□□□□ -0.56
PDGFRA-208ENST00000509490 TRAK2O60296 914 aa11.54□□□□□ -0.56
PDGFRA-208ENST00000509490 MRE11P49959 708 aa11.54□□□□□ -0.56
PDGFRA-208ENST00000509490 SKOR2Q2VWA4 1001 aaPredicted RBP11.54□□□□□ -0.56
PDGFRA-208ENST00000509490 SIRT2Q8IXJ6 389 aa11.54□□□□□ -0.56
PDGFRA-208ENST00000509490 OVOS2A0A0J9YW53 1432 aa11.54□□□□□ -0.56
PDGFRA-208ENST00000509490 OVOS2Q6IE36 1432 aa11.54□□□□□ -0.56
PDGFRA-208ENST00000509490 XRCC6P12956 609 aaKnown RBP eCLIP11.54□□□□□ -0.56
PDGFRA-208ENST00000509490 PHACTR3Q96KR7 559 aa11.54□□□□□ -0.56
PDGFRA-208ENST00000509490 DCTPP1Q9H773 170 aa11.53□□□□□ -0.56
PDGFRA-208ENST00000509490 MBIPQ9NS73 344 aa11.53□□□□□ -0.56
PDGFRA-208ENST00000509490 USP31Q70CQ4 1352 aa11.53□□□□□ -0.56
PDGFRA-208ENST00000509490 SAFB2Q14151 953 aaKnown RBP eCLIP11.53□□□□□ -0.56
PDGFRA-208ENST00000509490 TUBGCP6Q96RT7 1819 aa11.52□□□□□ -0.56
PDGFRA-208ENST00000509490 PODXL2Q9NZ53 605 aa11.52□□□□□ -0.56
PDGFRA-208ENST00000509490 LRRC37A3O60309 1634 aa11.52□□□□□ -0.56
PDGFRA-208ENST00000509490 FBXO31Q5XUX0 539 aaPredicted RBP11.52□□□□□ -0.57
PDGFRA-208ENST00000509490 UBR1Q8IWV7 1749 aa11.52□□□□□ -0.57
PDGFRA-208ENST00000509490 SSH2Q76I76 1423 aa11.52□□□□□ -0.57
PDGFRA-208ENST00000509490 CDC45O75419 566 aa11.51□□□□□ -0.57
PDGFRA-208ENST00000509490 LNPKQ9C0E8 428 aa11.51□□□□□ -0.57
PDGFRA-208ENST00000509490 ANO8Q9HCE9 1232 aaPredicted RBP11.51□□□□□ -0.57
PDGFRA-208ENST00000509490 TWISTNBQ3B726 338 aaPredicted RBP11.51□□□□□ -0.57
PDGFRA-208ENST00000509490 TBC1D9Q6ZT07 1266 aa11.51□□□□□ -0.57
PDGFRA-208ENST00000509490 GBP4Q96PP9 640 aa11.51□□□□□ -0.57
PDGFRA-208ENST00000509490 PEAK1Q9H792 1746 aa11.51□□□□□ -0.57
PDGFRA-208ENST00000509490 FMN2Q9NZ56 1722 aa11.51□□□□□ -0.57
PDGFRA-208ENST00000509490 RTL1A6NKG5 1358 aa11.5□□□□□ -0.57
PDGFRA-208ENST00000509490 K7ELQ4 463 aaPredicted RBP11.5□□□□□ -0.57
PDGFRA-208ENST00000509490 PTPRCP08575 1304 aa11.5□□□□□ -0.57
PDGFRA-208ENST00000509490 ARHGEF10O15013 1369 aa11.5□□□□□ -0.57
PDGFRA-208ENST00000509490 RPAP2Q8IXW5 612 aaPredicted RBP11.5□□□□□ -0.57
PDGFRA-208ENST00000509490 TSPYL6Q8N831 410 aa11.5□□□□□ -0.57
PDGFRA-208ENST00000509490 CCDC61Q9Y6R9 512 aa11.5□□□□□ -0.57
PDGFRA-208ENST00000509490 METP08581 1390 aa11.5□□□□□ -0.57
PDGFRA-208ENST00000509490 CLCN1P35523 988 aa11.49□□□□□ -0.57
PDGFRA-208ENST00000509490 ANKRD44Q8N8A2 993 aa11.49□□□□□ -0.57
PDGFRA-208ENST00000509490 CHL1O00533 1208 aa11.49□□□□□ -0.57
PDGFRA-208ENST00000509490 TNPO1Q92973 898 aaKnown RBP11.49□□□□□ -0.57
PDGFRA-208ENST00000509490 CRB1P82279 1406 aa11.49□□□□□ -0.57
PDGFRA-208ENST00000509490 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.49□□□□□ -0.57
PDGFRA-208ENST00000509490 ANKRD45Q5TZF3 282 aa11.49□□□□□ -0.57
PDGFRA-208ENST00000509490 EMILIN1Q9Y6C2 1016 aa11.49□□□□□ -0.57
PDGFRA-208ENST00000509490 RABEP1Q15276 862 aa11.48□□□□□ -0.57
PDGFRA-208ENST00000509490 TPRNQ4KMQ1 711 aa11.48□□□□□ -0.57
PDGFRA-208ENST00000509490 PLEKHM2Q8IWE5 1019 aa11.48□□□□□ -0.57
PDGFRA-208ENST00000509490 IL17RAQ96F46 866 aa11.48□□□□□ -0.57
PDGFRA-208ENST00000509490 PLEKHG3A1L390 1219 aa11.48□□□□□ -0.57
PDGFRA-208ENST00000509490 C8orf58Q8NAV2 365 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms