RNA–Protein interactions for RNA: ENST00000496144.5

VPS13B-206, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 5,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-206ENST00000496144 NEFLP07196 543 aa11.3□□□□□ -0.6
VPS13B-206ENST00000496144 TTC21BQ7Z4L5 1316 aa11.3□□□□□ -0.6
VPS13B-206ENST00000496144 XRN1Q8IZH2 1706 aaKnown RBP11.29□□□□□ -0.6
VPS13B-206ENST00000496144 NUDCQ9Y266 331 aa11.29□□□□□ -0.6
VPS13B-206ENST00000496144 HSP90AB1P08238 724 aaKnown RBP11.29□□□□□ -0.6
VPS13B-206ENST00000496144 EN1Q05925 392 aaPredicted RBP11.29□□□□□ -0.6
VPS13B-206ENST00000496144 COL16A1Q07092 1604 aaPredicted RBP11.29□□□□□ -0.6
VPS13B-206ENST00000496144 SPATA31A5Q5VU36 1347 aa11.29□□□□□ -0.6
VPS13B-206ENST00000496144 SPATA31A7Q8IWB4 1347 aa11.29□□□□□ -0.6
VPS13B-206ENST00000496144 ARXQ96QS3 562 aa11.28□□□□□ -0.6
VPS13B-206ENST00000496144 TMX4Q9H1E5 349 aaPredicted RBP11.28□□□□□ -0.6
VPS13B-206ENST00000496144 BARGINQ6ZT62 677 aa11.28□□□□□ -0.6
VPS13B-206ENST00000496144 SMARCC1Q92922 1105 aaPredicted RBP11.28□□□□□ -0.6
VPS13B-206ENST00000496144 ANKRD24Q8TF21 1146 aa11.28□□□□□ -0.6
VPS13B-206ENST00000496144 ATRNO75882 1429 aa11.28□□□□□ -0.6
VPS13B-206ENST00000496144 RGS17Q9UGC6 210 aaPredicted RBP11.27□□□□□ -0.61
VPS13B-206ENST00000496144 PSDA5PKW4 1024 aaPredicted RBP11.27□□□□□ -0.61
VPS13B-206ENST00000496144 POLR3AO14802 1390 aaPredicted RBP11.27□□□□□ -0.61
VPS13B-206ENST00000496144 PER1O15534 1290 aaPredicted RBP11.27□□□□□ -0.61
VPS13B-206ENST00000496144 RGS12O14924 1447 aa11.26□□□□□ -0.61
VPS13B-206ENST00000496144 R3HDM1Q15032 1099 aaKnown RBP11.26□□□□□ -0.61
VPS13B-206ENST00000496144 PNISRQ8TF01 805 aaKnown RBP11.26□□□□□ -0.61
VPS13B-206ENST00000496144 AK7Q96M32 723 aa11.26□□□□□ -0.61
VPS13B-206ENST00000496144 INSRP06213 1382 aa11.26□□□□□ -0.61
VPS13B-206ENST00000496144 PNNQ9H307 717 aaKnown RBP11.26□□□□□ -0.61
VPS13B-206ENST00000496144 ARHGEF28Q8N1W1 1705 aaKnown RBP11.26□□□□□ -0.61
VPS13B-206ENST00000496144 SPATA31A1Q5TZJ5 1347 aa11.25□□□□□ -0.61
VPS13B-206ENST00000496144 FLAD1Q8NFF5 587 aa11.25□□□□□ -0.61
VPS13B-206ENST00000496144 ADGRB1O14514 1584 aa11.25□□□□□ -0.61
VPS13B-206ENST00000496144 ADGRB2O60241 1585 aa11.25□□□□□ -0.61
VPS13B-206ENST00000496144 STRCP1A6NGW2 1772 aa11.25□□□□□ -0.61
VPS13B-206ENST00000496144 PUS7Q96PZ0 661 aaKnown RBP11.25□□□□□ -0.61
VPS13B-206ENST00000496144 GPR162Q16538 588 aa11.24□□□□□ -0.61
VPS13B-206ENST00000496144 PLEKHO1Q53GL0 409 aaPredicted RBP11.24□□□□□ -0.61
VPS13B-206ENST00000496144 TFCP2L1Q9NZI6 479 aa11.24□□□□□ -0.61
VPS13B-206ENST00000496144 TNNT2P45379 298 aaPredicted RBP11.24□□□□□ -0.61
VPS13B-206ENST00000496144 LARP1Q6PKG0 1096 aaKnown RBP11.24□□□□□ -0.61
VPS13B-206ENST00000496144 USP32Q8NFA0 1604 aa11.24□□□□□ -0.61
VPS13B-206ENST00000496144 CARD10Q9BWT7 1032 aa11.24□□□□□ -0.61
VPS13B-206ENST00000496144 ZCRB1Q8TBF4 217 aaKnown RBP11.23□□□□□ -0.61
VPS13B-206ENST00000496144 LRP6O75581 1613 aa11.23□□□□□ -0.61
VPS13B-206ENST00000496144 CRB1P82279 1406 aa11.23□□□□□ -0.61
VPS13B-206ENST00000496144 ACSBG1Q96GR2 724 aa11.22□□□□□ -0.61
VPS13B-206ENST00000496144 ERICH6BQ5W0A0 696 aa11.22□□□□□ -0.61
VPS13B-206ENST00000496144 PANK3Q9H999 370 aa11.22□□□□□ -0.61
VPS13B-206ENST00000496144 DEFB132Q7Z7B7 95 aa11.22□□□□□ -0.61
VPS13B-206ENST00000496144 ITSN1Q15811 1721 aa11.22□□□□□ -0.61
VPS13B-206ENST00000496144 WDR17Q8IZU2 1322 aa11.22□□□□□ -0.61
VPS13B-206ENST00000496144 OVOS2A0A0G2JMS6 1433 aa11.21□□□□□ -0.61
VPS13B-206ENST00000496144 OVOS2A0A0J9YW53 1432 aa11.21□□□□□ -0.61
VPS13B-206ENST00000496144 OVOS2Q6IE36 1432 aa11.21□□□□□ -0.61
VPS13B-206ENST00000496144 TMOD3Q9NYL9 352 aa11.21□□□□□ -0.61
VPS13B-206ENST00000496144 RTF1Q92541 710 aaKnown RBP11.21□□□□□ -0.61
VPS13B-206ENST00000496144 NALCNQ8IZF0 1738 aa11.21□□□□□ -0.61
VPS13B-206ENST00000496144 SSH2Q76I76 1423 aa11.21□□□□□ -0.62
VPS13B-206ENST00000496144 KNDC1Q76NI1 1749 aa11.21□□□□□ -0.62
VPS13B-206ENST00000496144 NHSL1Q5SYE7 1610 aa11.21□□□□□ -0.62
VPS13B-206ENST00000496144 C16orf71Q8IYS4 520 aaPredicted RBP11.2□□□□□ -0.62
VPS13B-206ENST00000496144 PXDNQ92626 1479 aa11.2□□□□□ -0.62
VPS13B-206ENST00000496144 NME9Q86XW9 330 aa11.2□□□□□ -0.62
VPS13B-206ENST00000496144 TTC5Q8N0Z6 440 aa11.2□□□□□ -0.62
VPS13B-206ENST00000496144 AATKQ6ZMQ8 1374 aa11.2□□□□□ -0.62
VPS13B-206ENST00000496144 SBNO2Q9Y2G9 1366 aa11.19□□□□□ -0.62
VPS13B-206ENST00000496144 EZH2Q15910 746 aaKnown RBP11.19□□□□□ -0.62
VPS13B-206ENST00000496144 TSHZ2Q9NRE2 1034 aa11.19□□□□□ -0.62
VPS13B-206ENST00000496144 PRR36Q9H6K5 1346 aa11.18□□□□□ -0.62
VPS13B-206ENST00000496144 NPC1L1Q9UHC9 1359 aa11.18□□□□□ -0.62
VPS13B-206ENST00000496144 SLC12A5Q9H2X9 1139 aa11.18□□□□□ -0.62
VPS13B-206ENST00000496144 FMN2Q9NZ56 1722 aa11.18□□□□□ -0.62
VPS13B-206ENST00000496144 EDC4Q6P2E9 1401 aaKnown RBP11.18□□□□□ -0.62
VPS13B-206ENST00000496144 PCDH11XQ9BZA7 1347 aa11.18□□□□□ -0.62
VPS13B-206ENST00000496144 PCDH11YQ9BZA8 1340 aa11.18□□□□□ -0.62
VPS13B-206ENST00000496144 CC2D1BQ5T0F9 858 aaKnown RBP11.18□□□□□ -0.62
VPS13B-206ENST00000496144 IP6K1Q92551 441 aa11.18□□□□□ -0.62
VPS13B-206ENST00000496144 RBM42Q9BTD8 480 aaKnown RBP11.18□□□□□ -0.62
VPS13B-206ENST00000496144 GGNBP2Q9H3C7 697 aa11.18□□□□□ -0.62
VPS13B-206ENST00000496144 USP6P35125 1406 aa11.18□□□□□ -0.62
VPS13B-206ENST00000496144 COL14A1Q05707 1796 aaKnown RBP11.18□□□□□ -0.62
VPS13B-206ENST00000496144 CABP4P57796 275 aa11.18□□□□□ -0.62
VPS13B-206ENST00000496144 CCNL1Q9UK58 526 aaPredicted RBP11.17□□□□□ -0.62
VPS13B-206ENST00000496144 NSD3Q9BZ95 1437 aa11.17□□□□□ -0.62
VPS13B-206ENST00000496144 KCNQ2O43526 872 aa11.17□□□□□ -0.62
VPS13B-206ENST00000496144 FAM182BQ5T319 152 aa11.17□□□□□ -0.62
VPS13B-206ENST00000496144 RNF123Q5XPI4 1314 aa11.17□□□□□ -0.62
VPS13B-206ENST00000496144 U2SURPO15042 1029 aaKnown RBP11.16□□□□□ -0.62
VPS13B-206ENST00000496144 SLC27A3Q5K4L6 730 aa11.16□□□□□ -0.62
VPS13B-206ENST00000496144 NRXN3Q9Y4C0 1643 aa11.16□□□□□ -0.62
VPS13B-206ENST00000496144 YY1P25490 414 aa11.16□□□□□ -0.62
VPS13B-206ENST00000496144 CPDO75976 1380 aa11.15□□□□□ -0.62
VPS13B-206ENST00000496144 MAPK8IP3Q9UPT6 1336 aa11.15□□□□□ -0.62
VPS13B-206ENST00000496144 AMOTQ4VCS5 1084 aa11.15□□□□□ -0.62
VPS13B-206ENST00000496144 GRIN3BO60391 1043 aa11.14□□□□□ -0.63
VPS13B-206ENST00000496144 IRX6P78412 446 aaPredicted RBP11.14□□□□□ -0.63
VPS13B-206ENST00000496144 AMER1Q5JTC6 1135 aaPredicted RBP11.14□□□□□ -0.63
VPS13B-206ENST00000496144 MPRIPQ6WCQ1 1025 aa11.14□□□□□ -0.63
VPS13B-206ENST00000496144 ARHGEF25Q86VW2 580 aa11.13□□□□□ -0.63
VPS13B-206ENST00000496144 ATF5Q9Y2D1 282 aaPredicted RBP11.13□□□□□ -0.63
VPS13B-206ENST00000496144 ZNF330Q9Y3S2 320 aaPredicted RBP11.13□□□□□ -0.63
VPS13B-206ENST00000496144 SLIT2O94813 1529 aa11.13□□□□□ -0.63
VPS13B-206ENST00000496144 IFNL2Q8IZJ0 200 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms