RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 HSP90AB2PQ58FF8 381 aa15.95■□□□□ 0.14
HDAC6-230ENST00000488543 USP54Q70EL1 1684 aa15.94■□□□□ 0.14
HDAC6-230ENST00000488543 PLEKHF1Q96S99 279 aa15.94■□□□□ 0.14
HDAC6-230ENST00000488543 SPINK5Q9NQ38 1064 aaPredicted RBP15.94■□□□□ 0.14
HDAC6-230ENST00000488543 PEAK1Q9H792 1746 aa15.93■□□□□ 0.14
HDAC6-230ENST00000488543 WWC1Q8IX03 1113 aa15.93■□□□□ 0.14
HDAC6-230ENST00000488543 NPHP3Q7Z494 1330 aa15.93■□□□□ 0.14
HDAC6-230ENST00000488543 LTBP4Q8N2S1 1624 aa15.93■□□□□ 0.14
HDAC6-230ENST00000488543 RRP7AQ9Y3A4 280 aaKnown RBP15.92■□□□□ 0.14
HDAC6-230ENST00000488543 IL13P35225 146 aa15.92■□□□□ 0.14
HDAC6-230ENST00000488543 RRP1P56182 461 aaKnown RBP15.92■□□□□ 0.14
HDAC6-230ENST00000488543 FANCIQ9NVI1 1328 aa15.92■□□□□ 0.14
HDAC6-230ENST00000488543 ZBTB7CA1YPR0 619 aa15.91■□□□□ 0.14
HDAC6-230ENST00000488543 CCDC27Q2M243 656 aa15.91■□□□□ 0.14
HDAC6-230ENST00000488543 CABLES1Q8TDN4 633 aa15.91■□□□□ 0.14
HDAC6-230ENST00000488543 KIF1AQ12756 1690 aa15.9■□□□□ 0.14
HDAC6-230ENST00000488543 HMOX1P09601 288 aa15.9■□□□□ 0.14
HDAC6-230ENST00000488543 AMPHP49418 695 aa15.9■□□□□ 0.14
HDAC6-230ENST00000488543 GCP02774 474 aa15.9■□□□□ 0.14
HDAC6-230ENST00000488543 NEUROD2Q15784 382 aa15.9■□□□□ 0.14
HDAC6-230ENST00000488543 E9PSI1 815 aa15.89■□□□□ 0.13
HDAC6-230ENST00000488543 EIF4A2Q14240 407 aaKnown RBP15.89■□□□□ 0.13
HDAC6-230ENST00000488543 TRPM3Q9HCF6 1732 aaPredicted RBP15.89■□□□□ 0.13
HDAC6-230ENST00000488543 RSPH6AQ9H0K4 717 aa15.88■□□□□ 0.13
HDAC6-230ENST00000488543 PXDNQ92626 1479 aa15.88■□□□□ 0.13
HDAC6-230ENST00000488543 SPATA31A3Q5VYP0 1347 aa15.87■□□□□ 0.13
HDAC6-230ENST00000488543 TULP1O00294 542 aaPredicted RBP15.87■□□□□ 0.13
HDAC6-230ENST00000488543 HOXC9P31274 260 aa15.87■□□□□ 0.13
HDAC6-230ENST00000488543 LTV1Q96GA3 475 aaPredicted RBP15.87■□□□□ 0.13
HDAC6-230ENST00000488543 RGPD1P0DJD0 1748 aa15.86■□□□□ 0.13
HDAC6-230ENST00000488543 FCHSD2O94868 740 aa15.86■□□□□ 0.13
HDAC6-230ENST00000488543 TMPOP42166 694 aaKnown RBP15.86■□□□□ 0.13
HDAC6-230ENST00000488543 ZC3H6P61129 1189 aaKnown RBP15.86■□□□□ 0.13
HDAC6-230ENST00000488543 WDR63Q8IWG1 891 aa15.86■□□□□ 0.13
HDAC6-230ENST00000488543 CCDC136Q96JN2 1154 aa15.86■□□□□ 0.13
HDAC6-230ENST00000488543 KCNH5Q8NCM2 988 aa15.86■□□□□ 0.13
HDAC6-230ENST00000488543 SBNO1A3KN83 1393 aa15.85■□□□□ 0.13
HDAC6-230ENST00000488543 SOS2Q07890 1332 aaPredicted RBP15.85■□□□□ 0.13
HDAC6-230ENST00000488543 AEBP1Q8IUX7 1158 aa15.85■□□□□ 0.13
HDAC6-230ENST00000488543 FLT4P35916 1363 aa15.84■□□□□ 0.13
HDAC6-230ENST00000488543 USP19O94966 1318 aa15.84■□□□□ 0.13
HDAC6-230ENST00000488543 MAPK8IP3Q9UPT6 1336 aa15.84■□□□□ 0.13
HDAC6-230ENST00000488543 PRKAR2BP31323 418 aa15.84■□□□□ 0.13
HDAC6-230ENST00000488543 PHACTR3Q96KR7 559 aa15.84■□□□□ 0.13
HDAC6-230ENST00000488543 TRIM35Q9UPQ4 493 aa15.84■□□□□ 0.13
HDAC6-230ENST00000488543 PNNQ9H307 717 aaKnown RBP15.84■□□□□ 0.13
HDAC6-230ENST00000488543 TNS3Q68CZ2 1445 aa15.83■□□□□ 0.13
HDAC6-230ENST00000488543 NFAT5O94916 1531 aa15.83■□□□□ 0.13
HDAC6-230ENST00000488543 SULT6B1Q6IMI4 303 aa15.83■□□□□ 0.12
HDAC6-230ENST00000488543 ARHGEF25Q86VW2 580 aa15.83■□□□□ 0.12
HDAC6-230ENST00000488543 ALS2Q96Q42 1657 aa15.83■□□□□ 0.12
HDAC6-230ENST00000488543 PIP4K2BP78356 416 aa15.83■□□□□ 0.12
HDAC6-230ENST00000488543 AXIN2Q9Y2T1 843 aa15.83■□□□□ 0.12
HDAC6-230ENST00000488543 MED1Q15648 1581 aaPredicted RBP15.82■□□□□ 0.12
HDAC6-230ENST00000488543 IP6K1Q92551 441 aa15.82■□□□□ 0.12
HDAC6-230ENST00000488543 EYA1Q99502 592 aa15.82■□□□□ 0.12
HDAC6-230ENST00000488543 DLG5Q8TDM6 1919 aa15.81■□□□□ 0.12
HDAC6-230ENST00000488543 PLIN1O60240 522 aa15.81■□□□□ 0.12
HDAC6-230ENST00000488543 CHRNA2Q15822 529 aa15.79■□□□□ 0.12
HDAC6-230ENST00000488543 SLIT3O75094 1523 aa15.79■□□□□ 0.12
HDAC6-230ENST00000488543 RIPK4P57078 832 aa15.79■□□□□ 0.12
HDAC6-230ENST00000488543 USHBP1Q8N6Y0 703 aa15.79■□□□□ 0.12
HDAC6-230ENST00000488543 LTN1O94822 1766 aa15.79■□□□□ 0.12
HDAC6-230ENST00000488543 EXOC6Q8TAG9 804 aa15.78■□□□□ 0.12
HDAC6-230ENST00000488543 NFE2L2Q16236 605 aa15.78■□□□□ 0.12
HDAC6-230ENST00000488543 LRRC59Q96AG4 307 aaKnown RBP15.78■□□□□ 0.12
HDAC6-230ENST00000488543 ARHGEF10O15013 1369 aa15.78■□□□□ 0.12
HDAC6-230ENST00000488543 ROBO1Q9Y6N7 1651 aa15.78■□□□□ 0.12
HDAC6-230ENST00000488543 TAOK2Q9UL54 1235 aa15.77■□□□□ 0.12
HDAC6-230ENST00000488543 UBAP1LF5GYI3 381 aa15.77■□□□□ 0.11
HDAC6-230ENST00000488543 TOM1O60784 492 aa15.77■□□□□ 0.11
HDAC6-230ENST00000488543 NBPF6Q5VWK0 638 aa15.77■□□□□ 0.11
HDAC6-230ENST00000488543 NBPF4Q96M43 638 aa15.77■□□□□ 0.11
HDAC6-230ENST00000488543 BCL11AQ9H165 835 aa15.77■□□□□ 0.11
HDAC6-230ENST00000488543 IL16Q14005 1332 aa15.77■□□□□ 0.11
HDAC6-230ENST00000488543 KIF24Q5T7B8 1368 aa15.76■□□□□ 0.11
HDAC6-230ENST00000488543 C20orf194Q5TEA3 1177 aa15.76■□□□□ 0.11
HDAC6-230ENST00000488543 MYH16Q9H6N6 1097 aa15.76■□□□□ 0.11
HDAC6-230ENST00000488543 KIAA0232Q92628 1395 aa15.75■□□□□ 0.11
HDAC6-230ENST00000488543 IGSF1Q8N6C5 1336 aa15.75■□□□□ 0.11
HDAC6-230ENST00000488543 HAP1P54257 671 aaPredicted RBP15.75■□□□□ 0.11
HDAC6-230ENST00000488543 RTL1A6NKG5 1358 aa15.74■□□□□ 0.11
HDAC6-230ENST00000488543 NHSL1Q5SYE7 1610 aa15.74■□□□□ 0.11
HDAC6-230ENST00000488543 PHRF1Q9P1Y6 1649 aaKnown RBP15.74■□□□□ 0.11
HDAC6-230ENST00000488543 BCAR3O75815 825 aa15.74■□□□□ 0.11
HDAC6-230ENST00000488543 ANKRD24Q8TF21 1146 aa15.74■□□□□ 0.11
HDAC6-230ENST00000488543 CRBNQ96SW2 442 aa15.74■□□□□ 0.11
HDAC6-230ENST00000488543 NEFMP07197 916 aa15.74■□□□□ 0.11
HDAC6-230ENST00000488543 SKAP1Q86WV1 359 aa15.74■□□□□ 0.11
HDAC6-230ENST00000488543 NBR1Q14596 966 aa15.73■□□□□ 0.11
HDAC6-230ENST00000488543 TSR2Q969E8 191 aaKnown RBP15.73■□□□□ 0.11
HDAC6-230ENST00000488543 THUMPD2Q9BTF0 503 aaKnown RBP15.73■□□□□ 0.11
HDAC6-230ENST00000488543 FAM83GA6ND36 823 aa15.72■□□□□ 0.11
HDAC6-230ENST00000488543 KDRP35968 1356 aa15.72■□□□□ 0.11
HDAC6-230ENST00000488543 RARSP54136 660 aaKnown RBP15.71■□□□□ 0.11
HDAC6-230ENST00000488543 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.71■□□□□ 0.11
HDAC6-230ENST00000488543 CERKQ8TCT0 537 aa15.71■□□□□ 0.11
HDAC6-230ENST00000488543 DCTN1Q14203 1278 aa15.71■□□□□ 0.1
HDAC6-230ENST00000488543 PRDM11Q9NQV5 511 aa15.71■□□□□ 0.1
HDAC6-230ENST00000488543 RGPD5Q99666 1765 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms