RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-208ENST00000485627 ADAMTS2O95450 1211 aa12.6□□□□□ -0.39
CTSA-208ENST00000485627 RRS1Q15050 365 aaKnown RBP12.6□□□□□ -0.39
CTSA-208ENST00000485627 CCDC146Q8IYE0 955 aa12.6□□□□□ -0.39
CTSA-208ENST00000485627 NGEFQ8N5V2 710 aa12.6□□□□□ -0.39
CTSA-208ENST00000485627 RTN4Q9NQC3 1192 aaKnown RBP12.6□□□□□ -0.39
CTSA-208ENST00000485627 EMILIN1Q9Y6C2 1016 aa12.6□□□□□ -0.39
CTSA-208ENST00000485627 SOX12O15370 315 aa12.59□□□□□ -0.39
CTSA-208ENST00000485627 FBLN1P23142 703 aa12.59□□□□□ -0.39
CTSA-208ENST00000485627 PDE3BQ13370 1112 aa12.59□□□□□ -0.39
CTSA-208ENST00000485627 KRT28Q7Z3Y7 464 aa12.59□□□□□ -0.39
CTSA-208ENST00000485627 RUNDC1Q96C34 613 aa12.59□□□□□ -0.39
CTSA-208ENST00000485627 MST1RQ04912 1400 aa12.59□□□□□ -0.39
CTSA-208ENST00000485627 PNPLA6Q8IY17 1366 aa12.58□□□□□ -0.4
CTSA-208ENST00000485627 NEFMP07197 916 aa12.58□□□□□ -0.4
CTSA-208ENST00000485627 NUTM2GQ5VZR2 741 aa12.58□□□□□ -0.4
CTSA-208ENST00000485627 LMOD2Q6P5Q4 547 aa12.58□□□□□ -0.4
CTSA-208ENST00000485627 KIF1AQ12756 1690 aa12.57□□□□□ -0.4
CTSA-208ENST00000485627 APAF1O14727 1248 aa12.57□□□□□ -0.4
CTSA-208ENST00000485627 AMPHP49418 695 aa12.57□□□□□ -0.4
CTSA-208ENST00000485627 NPHP3Q7Z494 1330 aa12.57□□□□□ -0.4
CTSA-208ENST00000485627 SMG6Q86US8 1419 aaKnown RBP12.56□□□□□ -0.4
CTSA-208ENST00000485627 XPCQ01831 940 aaPredicted RBP12.56□□□□□ -0.4
CTSA-208ENST00000485627 NGLY1Q96IV0 654 aa12.56□□□□□ -0.4
CTSA-208ENST00000485627 GTF3C3Q9Y5Q9 886 aa12.56□□□□□ -0.4
CTSA-208ENST00000485627 MAPK8IP3Q9UPT6 1336 aa12.56□□□□□ -0.4
CTSA-208ENST00000485627 COL3A1P02461 1466 aaPredicted RBP12.55□□□□□ -0.4
CTSA-208ENST00000485627 KCNH5Q8NCM2 988 aa12.55□□□□□ -0.4
CTSA-208ENST00000485627 MAP2P11137 1827 aaKnown RBP12.54□□□□□ -0.4
CTSA-208ENST00000485627 NEFLP07196 543 aa12.54□□□□□ -0.4
CTSA-208ENST00000485627 PIK3C2AO00443 1686 aa12.54□□□□□ -0.4
CTSA-208ENST00000485627 NHSL1Q5SYE7 1610 aa12.53□□□□□ -0.4
CTSA-208ENST00000485627 FCHSD2O94868 740 aa12.53□□□□□ -0.4
CTSA-208ENST00000485627 IL13P35225 146 aa12.53□□□□□ -0.4
CTSA-208ENST00000485627 TCP11L2Q8N4U5 519 aa12.53□□□□□ -0.4
CTSA-208ENST00000485627 LRRC59Q96AG4 307 aaKnown RBP12.53□□□□□ -0.4
CTSA-208ENST00000485627 MAP3K19Q56UN5 1328 aa12.53□□□□□ -0.4
CTSA-208ENST00000485627 SBNO1A3KN83 1393 aa12.53□□□□□ -0.4
CTSA-208ENST00000485627 FLT4P35916 1363 aa12.53□□□□□ -0.4
CTSA-208ENST00000485627 USP21Q9UK80 565 aa12.52□□□□□ -0.41
CTSA-208ENST00000485627 KIF24Q5T7B8 1368 aa12.52□□□□□ -0.41
CTSA-208ENST00000485627 GOLGA2Q08379 1002 aa12.51□□□□□ -0.41
CTSA-208ENST00000485627 EIF4A2Q14240 407 aaKnown RBP12.51□□□□□ -0.41
CTSA-208ENST00000485627 NEUROD2Q15784 382 aa12.51□□□□□ -0.41
CTSA-208ENST00000485627 EP400Q96L91 3159 aa12.5□□□□□ -0.41
CTSA-208ENST00000485627 ZBTB7CA1YPR0 619 aa12.5□□□□□ -0.41
CTSA-208ENST00000485627 PLEKHG5O94827 1062 aa12.5□□□□□ -0.41
CTSA-208ENST00000485627 HMOX1P09601 288 aa12.5□□□□□ -0.41
CTSA-208ENST00000485627 HSP90AB2PQ58FF8 381 aa12.5□□□□□ -0.41
CTSA-208ENST00000485627 ATF5Q9Y2D1 282 aaPredicted RBP12.5□□□□□ -0.41
CTSA-208ENST00000485627 RTL1A6NKG5 1358 aa12.49□□□□□ -0.41
CTSA-208ENST00000485627 GCP02774 474 aa12.49□□□□□ -0.41
CTSA-208ENST00000485627 HOXC9P31274 260 aa12.49□□□□□ -0.41
CTSA-208ENST00000485627 PRKAR2BP31323 418 aa12.49□□□□□ -0.41
CTSA-208ENST00000485627 PLEKHF1Q96S99 279 aa12.49□□□□□ -0.41
CTSA-208ENST00000485627 RSPH6AQ9H0K4 717 aa12.49□□□□□ -0.41
CTSA-208ENST00000485627 RRP7AQ9Y3A4 280 aaKnown RBP12.49□□□□□ -0.41
CTSA-208ENST00000485627 USP54Q70EL1 1684 aa12.48□□□□□ -0.41
CTSA-208ENST00000485627 TRPC5Q9UL62 973 aaPredicted RBP12.48□□□□□ -0.41
CTSA-208ENST00000485627 SUPT16HQ9Y5B9 1047 aaKnown RBP12.48□□□□□ -0.41
CTSA-208ENST00000485627 ATRNO75882 1429 aa12.47□□□□□ -0.41
CTSA-208ENST00000485627 TNS3Q68CZ2 1445 aa12.47□□□□□ -0.41
CTSA-208ENST00000485627 ARHGEF10O15013 1369 aa12.47□□□□□ -0.41
CTSA-208ENST00000485627 USP19O94966 1318 aa12.47□□□□□ -0.41
CTSA-208ENST00000485627 ZNF521Q96K83 1311 aa12.47□□□□□ -0.41
CTSA-208ENST00000485627 E9PSI1 815 aa12.47□□□□□ -0.41
CTSA-208ENST00000485627 TMPOP42166 694 aaKnown RBP12.47□□□□□ -0.41
CTSA-208ENST00000485627 CCDC27Q2M243 656 aa12.47□□□□□ -0.41
CTSA-208ENST00000485627 DEFB132Q7Z7B7 95 aa12.47□□□□□ -0.41
CTSA-208ENST00000485627 WWC1Q8IX03 1113 aa12.47□□□□□ -0.41
CTSA-208ENST00000485627 IP6K1Q92551 441 aa12.47□□□□□ -0.41
CTSA-208ENST00000485627 CDCA7LQ96GN5 454 aa12.47□□□□□ -0.41
CTSA-208ENST00000485627 SPATA31A3Q5VYP0 1347 aa12.46□□□□□ -0.41
CTSA-208ENST00000485627 RIPK4P57078 832 aa12.46□□□□□ -0.41
CTSA-208ENST00000485627 SULT6B1Q6IMI4 303 aa12.46□□□□□ -0.41
CTSA-208ENST00000485627 WDR63Q8IWG1 891 aa12.46□□□□□ -0.41
CTSA-208ENST00000485627 TRPM3Q9HCF6 1732 aaPredicted RBP12.45□□□□□ -0.42
CTSA-208ENST00000485627 SLFN5Q08AF3 891 aa12.45□□□□□ -0.42
CTSA-208ENST00000485627 FNBP4Q8N3X1 1017 aaPredicted RBP12.45□□□□□ -0.42
CTSA-208ENST00000485627 LTV1Q96GA3 475 aaPredicted RBP12.45□□□□□ -0.42
CTSA-208ENST00000485627 SLIT3O75094 1523 aa12.44□□□□□ -0.42
CTSA-208ENST00000485627 NFAT5O94916 1531 aa12.44□□□□□ -0.42
CTSA-208ENST00000485627 HAP1P54257 671 aaPredicted RBP12.44□□□□□ -0.42
CTSA-208ENST00000485627 LMOD3Q0VAK6 560 aa12.44□□□□□ -0.42
CTSA-208ENST00000485627 NFE2L2Q16236 605 aa12.44□□□□□ -0.42
CTSA-208ENST00000485627 ARHGEF25Q86VW2 580 aa12.44□□□□□ -0.42
CTSA-208ENST00000485627 PEAK1Q9H792 1746 aa12.44□□□□□ -0.42
CTSA-208ENST00000485627 PXDNQ92626 1479 aa12.44□□□□□ -0.42
CTSA-208ENST00000485627 SOS2Q07890 1332 aaPredicted RBP12.43□□□□□ -0.42
CTSA-208ENST00000485627 ZC3H6P61129 1189 aaKnown RBP12.43□□□□□ -0.42
CTSA-208ENST00000485627 RCAN3Q9UKA8 241 aa12.43□□□□□ -0.42
CTSA-208ENST00000485627 MARF1Q9Y4F3 1742 aaKnown RBP12.42□□□□□ -0.42
CTSA-208ENST00000485627 IGSF1Q8N6C5 1336 aa12.42□□□□□ -0.42
CTSA-208ENST00000485627 CALD1Q05682 793 aaKnown RBP12.42□□□□□ -0.42
CTSA-208ENST00000485627 DUSP27Q5VZP5 1158 aa12.42□□□□□ -0.42
CTSA-208ENST00000485627 SAMD1Q6SPF0 538 aaPredicted RBP12.42□□□□□ -0.42
CTSA-208ENST00000485627 EYA1Q99502 592 aa12.42□□□□□ -0.42
CTSA-208ENST00000485627 MYH16Q9H6N6 1097 aa12.42□□□□□ -0.42
CTSA-208ENST00000485627 ALS2Q96Q42 1657 aa12.42□□□□□ -0.42
CTSA-208ENST00000485627 BCL9LQ86UU0 1499 aa12.41□□□□□ -0.42
CTSA-208ENST00000485627 PSDA5PKW4 1024 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms