RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 CCDC61Q9Y6R9 512 aa10.96□□□□□ -0.66
HPS4-208ENST00000464362 SCAF11Q99590 1463 aaKnown RBP10.96□□□□□ -0.66
HPS4-208ENST00000464362 LRRIQ1Q96JM4 1722 aa10.96□□□□□ -0.66
HPS4-208ENST00000464362 PZPP20742 1482 aa10.95□□□□□ -0.66
HPS4-208ENST00000464362 FERMT3Q86UX7 667 aa10.95□□□□□ -0.66
HPS4-208ENST00000464362 USHBP1Q8N6Y0 703 aa10.95□□□□□ -0.66
HPS4-208ENST00000464362 FMNL2Q96PY5 1086 aa10.95□□□□□ -0.66
HPS4-208ENST00000464362 DNAJC2Q99543 621 aaKnown RBP10.95□□□□□ -0.66
HPS4-208ENST00000464362 KRT24Q2M2I5 525 aa10.94□□□□□ -0.66
HPS4-208ENST00000464362 CNTROBQ8N137 903 aa10.94□□□□□ -0.66
HPS4-208ENST00000464362 ZRANB1Q9UGI0 708 aa10.94□□□□□ -0.66
HPS4-208ENST00000464362 C16orf71Q8IYS4 520 aaPredicted RBP10.94□□□□□ -0.66
HPS4-208ENST00000464362 GAS2L2Q8NHY3 880 aa10.94□□□□□ -0.66
HPS4-208ENST00000464362 RNF20Q5VTR2 975 aa10.94□□□□□ -0.66
HPS4-208ENST00000464362 ATAD2Q6PL18 1390 aa10.94□□□□□ -0.66
HPS4-208ENST00000464362 CPLX1O14810 134 aa10.93□□□□□ -0.66
HPS4-208ENST00000464362 FYB1O15117 783 aa10.93□□□□□ -0.66
HPS4-208ENST00000464362 DDX58O95786 925 aaKnown RBP10.93□□□□□ -0.66
HPS4-208ENST00000464362 MBD3O95983 291 aa10.93□□□□□ -0.66
HPS4-208ENST00000464362 CCDC173Q0VFZ6 552 aa10.93□□□□□ -0.66
HPS4-208ENST00000464362 KIF3AQ9Y496 699 aa10.93□□□□□ -0.66
HPS4-208ENST00000464362 XRCC6P12956 609 aaKnown RBP eCLIP10.93□□□□□ -0.666e-6■■■■■ 31.4
HPS4-208ENST00000464362 TSPYL6Q8N831 410 aa10.93□□□□□ -0.66
HPS4-208ENST00000464362 KIF14Q15058 1648 aa10.93□□□□□ -0.66
HPS4-208ENST00000464362 PES1O00541 588 aaKnown RBP10.93□□□□□ -0.66
HPS4-208ENST00000464362 SYTL4Q96C24 671 aaPredicted RBP10.93□□□□□ -0.66
HPS4-208ENST00000464362 TSPY26PQ9H489 355 aa10.93□□□□□ -0.66
HPS4-208ENST00000464362 MBIPQ9NS73 344 aa10.93□□□□□ -0.66
HPS4-208ENST00000464362 TEX14Q8IWB6 1497 aa10.93□□□□□ -0.66
HPS4-208ENST00000464362 ESCO1Q5FWF5 840 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 STK11IPQ8N1F8 1099 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 RASSF8Q8NHQ8 419 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 RAPGEF4Q8WZA2 1011 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 SRCIN1Q9C0H9 1055 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 C14orf93Q9H972 538 aaKnown RBP10.92□□□□□ -0.66
HPS4-208ENST00000464362 SASS6Q6UVJ0 657 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 RPAP2Q8IXW5 612 aaPredicted RBP10.92□□□□□ -0.66
HPS4-208ENST00000464362 RBM27Q9P2N5 1060 aaKnown RBP10.92□□□□□ -0.66
HPS4-208ENST00000464362 TPM4P67936 248 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 HSP90AB4PQ58FF6 505 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 TRIM5Q9C035 493 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 CIZ1Q9ULV3 898 aaPredicted RBP10.92□□□□□ -0.66
HPS4-208ENST00000464362 RNF123Q5XPI4 1314 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 ANXA1P04083 346 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 MYL6BP14649 208 aa10.92□□□□□ -0.66
HPS4-208ENST00000464362 CCT4P50991 539 aaKnown RBP10.92□□□□□ -0.66
HPS4-208ENST00000464362 WASHC4Q2M389 1173 aa10.91□□□□□ -0.66
HPS4-208ENST00000464362 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.91□□□□□ -0.66
HPS4-208ENST00000464362 ZNF530Q6P9A1 599 aaPredicted RBP10.91□□□□□ -0.66
HPS4-208ENST00000464362 TCOF1Q13428 1488 aaKnown RBP10.91□□□□□ -0.66
HPS4-208ENST00000464362 SAMD9Q5K651 1589 aa10.91□□□□□ -0.66
HPS4-208ENST00000464362 ATP2B1P20020 1258 aa10.9□□□□□ -0.66
HPS4-208ENST00000464362 AEBP1Q8IUX7 1158 aa10.9□□□□□ -0.66
HPS4-208ENST00000464362 C8orf58Q8NAV2 365 aa10.9□□□□□ -0.66
HPS4-208ENST00000464362 MEIS3Q99687 375 aa10.9□□□□□ -0.66
HPS4-208ENST00000464362 SDF4Q9BRK5 362 aa10.9□□□□□ -0.66
HPS4-208ENST00000464362 CCDC39Q9UFE4 941 aa10.9□□□□□ -0.66
HPS4-208ENST00000464362 RPGRIP1LQ68CZ1 1315 aa10.9□□□□□ -0.66
HPS4-208ENST00000464362 JAKMIP1Q96N16 626 aaKnown RBP10.9□□□□□ -0.66
HPS4-208ENST00000464362 CFAP43Q8NDM7 1665 aa10.9□□□□□ -0.66
HPS4-208ENST00000464362 GTF2E1P29083 439 aaPredicted RBP10.9□□□□□ -0.66
HPS4-208ENST00000464362 ALDH1L2Q3SY69 923 aa10.9□□□□□ -0.66
HPS4-208ENST00000464362 PHACTR3Q96KR7 559 aa10.9□□□□□ -0.66
HPS4-208ENST00000464362 MAGI3Q5TCQ9 1506 aa10.9□□□□□ -0.67
HPS4-208ENST00000464362 FAM177BA6PVY3 158 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 PPFIA3O75145 1194 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 BMP2KLQ5H9B9 411 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 ZNF692Q9BU19 519 aaPredicted RBP10.89□□□□□ -0.67
HPS4-208ENST00000464362 CWC22Q9HCG8 908 aaKnown RBP10.89□□□□□ -0.67
HPS4-208ENST00000464362 DTNBO60941 627 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 HOMER1Q86YM7 354 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 NCKAP5LQ9HCH0 1330 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 ADGRL1O94910 1474 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 MX1P20591 662 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 CCDC73Q6ZRK6 1079 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 AACSQ86V21 672 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 LRRFIP2Q9Y608 721 aaKnown RBP10.89□□□□□ -0.67
HPS4-208ENST00000464362 MCM2P49736 904 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 HSP90AB2PQ58FF8 381 aa10.89□□□□□ -0.67
HPS4-208ENST00000464362 CCDC85AQ96PX6 553 aaPredicted RBP10.89□□□□□ -0.67
HPS4-208ENST00000464362 FAM135AQ9P2D6 1515 aa10.88□□□□□ -0.67
HPS4-208ENST00000464362 BAG4O95429 457 aaKnown RBP10.88□□□□□ -0.67
HPS4-208ENST00000464362 LARP1BQ659C4 914 aaKnown RBP10.88□□□□□ -0.67
HPS4-208ENST00000464362 CCDC83Q8IWF9 413 aa10.88□□□□□ -0.67
HPS4-208ENST00000464362 SPG7Q9UQ90 795 aa10.88□□□□□ -0.67
HPS4-208ENST00000464362 SPATA31E1Q6ZUB1 1445 aa10.88□□□□□ -0.67
HPS4-208ENST00000464362 TRAPPC8Q9Y2L5 1435 aa10.88□□□□□ -0.67
HPS4-208ENST00000464362 SYCP2Q9BX26 1530 aa10.88□□□□□ -0.67
HPS4-208ENST00000464362 DDX11Q96FC9 970 aa10.88□□□□□ -0.67
HPS4-208ENST00000464362 CYP46A1Q9Y6A2 500 aa10.88□□□□□ -0.67
HPS4-208ENST00000464362 KDM2BQ8NHM5 1336 aa10.87□□□□□ -0.67
HPS4-208ENST00000464362 WDR33Q9C0J8 1336 aaKnown RBP10.87□□□□□ -0.67
HPS4-208ENST00000464362 CASTP20810 708 aaKnown RBP10.87□□□□□ -0.67
HPS4-208ENST00000464362 CAMK4Q16566 473 aa10.87□□□□□ -0.67
HPS4-208ENST00000464362 ZSCAN30Q86W11 494 aa10.87□□□□□ -0.67
HPS4-208ENST00000464362 ASXL1Q8IXJ9 1541 aa10.87□□□□□ -0.67
HPS4-208ENST00000464362 NUCB1Q02818 461 aa10.87□□□□□ -0.67
HPS4-208ENST00000464362 RAPGEF6Q8TEU7 1601 aa10.87□□□□□ -0.67
HPS4-208ENST00000464362 CEBPAP49715 358 aaPredicted RBP10.87□□□□□ -0.67
HPS4-208ENST00000464362 TAF7Q15545 349 aaPredicted RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms