RNA–Protein interactions for RNA: ENST00000454612.6

DDR1-240, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS P3 TSL 5 BASIC

Gene DDR1, Length 3,942 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-240	ENST00000454612	PREX1	Q8TCU6	1659 aa		13.87	□□□□□ -0.19
DDR1-240	ENST00000454612	CASC1	Q6TDU7	716 aa		13.87	□□□□□ -0.19
DDR1-240	ENST00000454612	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.87	□□□□□ -0.19
DDR1-240	ENST00000454612	RBM42	Q9BTD8	480 aa	Known RBP	13.87	□□□□□ -0.19
DDR1-240	ENST00000454612	KDM5A	P29375	1690 aa	Known RBP	13.87	□□□□□ -0.19
DDR1-240	ENST00000454612	MYOM2	P54296	1465 aa		13.87	□□□□□ -0.19
DDR1-240	ENST00000454612	STK31	Q9BXU1	1019 aa		13.86	□□□□□ -0.19
DDR1-240	ENST00000454612	SLC4A2	P04920	1241 aa		13.86	□□□□□ -0.19
DDR1-240	ENST00000454612	NLRP6	P59044	892 aa		13.86	□□□□□ -0.19
DDR1-240	ENST00000454612	MPND	Q8N594	471 aa		13.86	□□□□□ -0.19
DDR1-240	ENST00000454612	TSPYL4	Q9UJ04	414 aa		13.86	□□□□□ -0.19
DDR1-240	ENST00000454612	ATAD2	Q6PL18	1390 aa		13.86	□□□□□ -0.19
DDR1-240	ENST00000454612	DTNB	O60941	627 aa		13.85	□□□□□ -0.19
DDR1-240	ENST00000454612	MAP4K4	O95819	1239 aa	Predicted RBP	13.85	□□□□□ -0.19
DDR1-240	ENST00000454612	USHBP1	Q8N6Y0	703 aa		13.85	□□□□□ -0.19
DDR1-240	ENST00000454612	KCNJ4	P48050	445 aa		13.85	□□□□□ -0.19
DDR1-240	ENST00000454612	NUDT16	Q96DE0	195 aa	Known RBP	13.85	□□□□□ -0.19
DDR1-240	ENST00000454612	MROH2A	A6NES4	1674 aa		13.85	□□□□□ -0.19
DDR1-240	ENST00000454612	RIMS2	Q9UQ26	1411 aa		13.85	□□□□□ -0.19
DDR1-240	ENST00000454612	L1TD1	Q5T7N2	865 aa	Known RBP	13.84	□□□□□ -0.19
DDR1-240	ENST00000454612	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.84	□□□□□ -0.19
DDR1-240	ENST00000454612	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.84	□□□□□ -0.19
DDR1-240	ENST00000454612	GNAI1	P63096	354 aa		13.84	□□□□□ -0.19
DDR1-240	ENST00000454612	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.84	□□□□□ -0.19
DDR1-240	ENST00000454612	FER1L4	A9Z1Z3	1794 aa		13.84	□□□□□ -0.19
DDR1-240	ENST00000454612	CALD1	Q05682	793 aa	Known RBP	13.83	□□□□□ -0.2
DDR1-240	ENST00000454612	KIF16B	Q96L93	1317 aa		13.83	□□□□□ -0.2
DDR1-240	ENST00000454612	DDX49	Q9Y6V7	483 aa	Known RBP	13.83	□□□□□ -0.2
DDR1-240	ENST00000454612	ADGRB3	O60242	1522 aa		13.83	□□□□□ -0.2
DDR1-240	ENST00000454612	CHD1L	Q86WJ1	897 aa		13.82	□□□□□ -0.2
DDR1-240	ENST00000454612	POLR3A	O14802	1390 aa	Predicted RBP	13.82	□□□□□ -0.2
DDR1-240	ENST00000454612	CDK11B	P21127	795 aa	Known RBP	13.82	□□□□□ -0.2
DDR1-240	ENST00000454612	C8orf58	Q8NAV2	365 aa		13.82	□□□□□ -0.2
DDR1-240	ENST00000454612	EXOC6B	Q9Y2D4	811 aa		13.82	□□□□□ -0.2
DDR1-240	ENST00000454612	PTMA	P06454	111 aa	Known RBP	13.82	□□□□□ -0.2
DDR1-240	ENST00000454612	RIMS1	Q86UR5	1692 aa	Known RBP	13.81	□□□□□ -0.2
DDR1-240	ENST00000454612	HSP90AB2P	Q58FF8	381 aa		13.81	□□□□□ -0.2
DDR1-240	ENST00000454612	NRXN1	Q9ULB1	1477 aa		13.81	□□□□□ -0.2
DDR1-240	ENST00000454612	TRAK2	O60296	914 aa		13.81	□□□□□ -0.2
DDR1-240	ENST00000454612	LARP6	Q9BRS8	491 aa	Known RBP	13.81	□□□□□ -0.2
DDR1-240	ENST00000454612	FOXO3	O43524	673 aa		13.81	□□□□□ -0.2
DDR1-240	ENST00000454612	CHMP5	Q9NZZ3	219 aa		13.81	□□□□□ -0.2
DDR1-240	ENST00000454612	AIMP1	Q12904	312 aa	Known RBP	13.8	□□□□□ -0.2
DDR1-240	ENST00000454612	ANO2	Q9NQ90	1003 aa		13.8	□□□□□ -0.2
DDR1-240	ENST00000454612	IL1RAPL2	Q9NP60	686 aa		13.8	□□□□□ -0.2
DDR1-240	ENST00000454612	CHMP3	Q9Y3E7	222 aa		13.8	□□□□□ -0.2
DDR1-240	ENST00000454612	KIAA1210	Q9ULL0	1709 aa		13.8	□□□□□ -0.2
DDR1-240	ENST00000454612	DDX54	Q8TDD1	881 aa	Known RBP	13.8	□□□□□ -0.2
DDR1-240	ENST00000454612	MBIP	Q9NS73	344 aa		13.8	□□□□□ -0.2
DDR1-240	ENST00000454612	POLK	Q9UBT6	870 aa		13.8	□□□□□ -0.2
DDR1-240	ENST00000454612	SBNO2	Q9Y2G9	1366 aa		13.8	□□□□□ -0.2
DDR1-240	ENST00000454612	HAP1	P54257	671 aa	Predicted RBP	13.79	□□□□□ -0.2
DDR1-240	ENST00000454612	MCTP1	Q6DN14	999 aa		13.79	□□□□□ -0.2
DDR1-240	ENST00000454612	PIK3C2B	O00750	1634 aa		13.79	□□□□□ -0.2
DDR1-240	ENST00000454612	ANXA1	P04083	346 aa		13.79	□□□□□ -0.2
DDR1-240	ENST00000454612	GBP4	Q96PP9	640 aa		13.79	□□□□□ -0.2
DDR1-240	ENST00000454612	CHMP4B	Q9H444	224 aa	Known RBP	13.79	□□□□□ -0.2
DDR1-240	ENST00000454612	SPATA31D1	Q6ZQQ2	1576 aa		13.79	□□□□□ -0.2
DDR1-240	ENST00000454612	NFE2L2	Q16236	605 aa		13.79	□□□□□ -0.2
DDR1-240	ENST00000454612	A2ML1	A8K2U0	1454 aa		13.78	□□□□□ -0.2
DDR1-240	ENST00000454612	FCHSD2	O94868	740 aa		13.78	□□□□□ -0.2
DDR1-240	ENST00000454612	LMOD3	Q0VAK6	560 aa		13.78	□□□□□ -0.2
DDR1-240	ENST00000454612	ANKLE2	Q86XL3	938 aa		13.78	□□□□□ -0.2
DDR1-240	ENST00000454612	TRIM35	Q9UPQ4	493 aa		13.78	□□□□□ -0.2
DDR1-240	ENST00000454612		A0A1W2PP64	1363 aa		13.77	□□□□□ -0.2
DDR1-240	ENST00000454612	ABTB2	Q8N961	1025 aa		13.77	□□□□□ -0.2
DDR1-240	ENST00000454612	API5	Q9BZZ5	524 aa	Known RBP	13.77	□□□□□ -0.2
DDR1-240	ENST00000454612	CCDC61	Q9Y6R9	512 aa		13.77	□□□□□ -0.2
DDR1-240	ENST00000454612	TMEM2	Q9UHN6	1383 aa		13.77	□□□□□ -0.2
DDR1-240	ENST00000454612	CSB-PGBD3	P0DP91	1061 aa		13.77	□□□□□ -0.21
DDR1-240	ENST00000454612	RNF214	Q8ND24	703 aa		13.76	□□□□□ -0.21
DDR1-240	ENST00000454612	PANK2	Q9BZ23	570 aa		13.76	□□□□□ -0.21
DDR1-240	ENST00000454612	NLRP1	Q9C000	1473 aa		13.76	□□□□□ -0.21
DDR1-240	ENST00000454612	ADGRB1	O14514	1584 aa		13.76	□□□□□ -0.21
DDR1-240	ENST00000454612	LTK	P29376	864 aa		13.76	□□□□□ -0.21
DDR1-240	ENST00000454612	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.76	□□□□□ -0.21
DDR1-240	ENST00000454612	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.75	□□□□□ -0.21
DDR1-240	ENST00000454612	NEURL4	Q96JN8	1562 aa		13.75	□□□□□ -0.21
DDR1-240	ENST00000454612	MCM4	P33991	863 aa		13.75	□□□□□ -0.21
DDR1-240	ENST00000454612	MYO5B	Q9ULV0	1848 aa		13.75	□□□□□ -0.21
DDR1-240	ENST00000454612	IFT172	Q9UG01	1749 aa		13.74	□□□□□ -0.21
DDR1-240	ENST00000454612	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.74	□□□□□ -0.21
DDR1-240	ENST00000454612	HMMR	O75330	724 aa		13.74	□□□□□ -0.21
DDR1-240	ENST00000454612	NEK4	P51957	841 aa		13.74	□□□□□ -0.21
DDR1-240	ENST00000454612	FAM43A	Q8N2R8	423 aa		13.74	□□□□□ -0.21
DDR1-240	ENST00000454612	C3	P01024	1663 aa		13.74	□□□□□ -0.21
DDR1-240	ENST00000454612	TBC1D32	Q96NH3	1257 aa		13.73	□□□□□ -0.21
DDR1-240	ENST00000454612	NEXMIF	Q5QGS0	1516 aa		13.73	□□□□□ -0.21
DDR1-240	ENST00000454612	TMEM131L	A2VDJ0	1609 aa		13.73	□□□□□ -0.21
DDR1-240	ENST00000454612	WASL	O00401	505 aa	Predicted RBP	13.73	□□□□□ -0.21
DDR1-240	ENST00000454612	FGD1	P98174	961 aa		13.73	□□□□□ -0.21
DDR1-240	ENST00000454612	UPF3B	Q9BZI7	483 aa	Known RBP	13.73	□□□□□ -0.21
DDR1-240	ENST00000454612	HSPA2	P54652	639 aa		13.72	□□□□□ -0.21
DDR1-240	ENST00000454612	MEIS3	Q99687	375 aa		13.72	□□□□□ -0.21
DDR1-240	ENST00000454612	PHF23	Q9BUL5	403 aa	Predicted RBP	13.72	□□□□□ -0.21
DDR1-240	ENST00000454612	TEF	Q10587	303 aa		13.72	□□□□□ -0.21
DDR1-240	ENST00000454612	SURF6	O75683	361 aa	Known RBP	13.72	□□□□□ -0.21
DDR1-240	ENST00000454612	PSME1	Q06323	249 aa		13.72	□□□□□ -0.21
DDR1-240	ENST00000454612	CAVIN1	Q6NZI2	390 aa	Known RBP	13.72	□□□□□ -0.21
DDR1-240	ENST00000454612	QRICH2	Q9H0J4	1663 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 115 ms