RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 HDAC1Q13547 482 aaPredicted RBP20.81■□□□□ 0.92
CLCNKA-203ENST00000439316 SSH1Q8WYL5 1049 aa20.81■□□□□ 0.92
CLCNKA-203ENST00000439316 NUTM2FA1L443 756 aa20.81■□□□□ 0.92
CLCNKA-203ENST00000439316 ATF7IPQ6VMQ6 1270 aa20.8■□□□□ 0.92
CLCNKA-203ENST00000439316 DDX19BQ9UMR2 479 aa20.8■□□□□ 0.92
CLCNKA-203ENST00000439316 ANTXR1Q9H6X2 564 aa20.79■□□□□ 0.92
CLCNKA-203ENST00000439316 BRPF3Q9ULD4 1205 aa20.79■□□□□ 0.92
CLCNKA-203ENST00000439316 LRRC7Q96NW7 1537 aa20.77■□□□□ 0.92
CLCNKA-203ENST00000439316 CPSF1Q10570 1443 aaKnown RBP20.77■□□□□ 0.92
CLCNKA-203ENST00000439316 DIAPH1O60610 1272 aaKnown RBP20.77■□□□□ 0.92
CLCNKA-203ENST00000439316 HSPA2P54652 639 aa20.77■□□□□ 0.92
CLCNKA-203ENST00000439316 RIPK4P57078 832 aa20.76■□□□□ 0.91
CLCNKA-203ENST00000439316 TBC1D2Q9BYX2 928 aa20.76■□□□□ 0.91
CLCNKA-203ENST00000439316 PNNQ9H307 717 aaKnown RBP20.76■□□□□ 0.91
CLCNKA-203ENST00000439316 ITPRIPQ8IWB1 547 aa20.76■□□□□ 0.91
CLCNKA-203ENST00000439316 KIF16BQ96L93 1317 aa20.75■□□□□ 0.91
CLCNKA-203ENST00000439316 TOPAZ1Q8N9V7 1692 aa20.75■□□□□ 0.91
CLCNKA-203ENST00000439316 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.75■□□□□ 0.91
CLCNKA-203ENST00000439316 SMC5Q8IY18 1101 aa20.75■□□□□ 0.91
CLCNKA-203ENST00000439316 RBM33Q96EV2 1170 aaKnown RBP20.75■□□□□ 0.91
CLCNKA-203ENST00000439316 SLKQ9H2G2 1235 aaPredicted RBP20.75■□□□□ 0.91
CLCNKA-203ENST00000439316 NOB1Q9ULX3 412 aaKnown RBP20.75■□□□□ 0.91
CLCNKA-203ENST00000439316 RGPD8O14715 1765 aaPredicted RBP20.74■□□□□ 0.91
CLCNKA-203ENST00000439316 ITSN1Q15811 1721 aa20.74■□□□□ 0.91
CLCNKA-203ENST00000439316 AKAP12Q02952 1782 aa20.74■□□□□ 0.91
CLCNKA-203ENST00000439316 TMEM57Q8N5G2 664 aa20.73■□□□□ 0.91
CLCNKA-203ENST00000439316 RTN4Q9NQC3 1192 aaKnown RBP20.73■□□□□ 0.91
CLCNKA-203ENST00000439316 MON2Q7Z3U7 1717 aa20.72■□□□□ 0.91
CLCNKA-203ENST00000439316 ALDH1L2Q3SY69 923 aa20.72■□□□□ 0.91
CLCNKA-203ENST00000439316 ZBTB40Q9NUA8 1239 aa20.72■□□□□ 0.91
CLCNKA-203ENST00000439316 NALCNQ8IZF0 1738 aa20.72■□□□□ 0.91
CLCNKA-203ENST00000439316 EDC4Q6P2E9 1401 aaKnown RBP20.71■□□□□ 0.91
CLCNKA-203ENST00000439316 IPO8O15397 1037 aaKnown RBP20.71■□□□□ 0.91
CLCNKA-203ENST00000439316 FCHSD2O94868 740 aa20.71■□□□□ 0.91
CLCNKA-203ENST00000439316 PLEKHG3A1L390 1219 aa20.7■□□□□ 0.9
CLCNKA-203ENST00000439316 ACEP12821 1306 aa20.7■□□□□ 0.9
CLCNKA-203ENST00000439316 ZNF692Q9BU19 519 aaPredicted RBP20.7■□□□□ 0.9
CLCNKA-203ENST00000439316 LMTK3Q96Q04 1460 aa20.69■□□□□ 0.9
CLCNKA-203ENST00000439316 BRPF1P55201 1214 aaPredicted RBP20.69■□□□□ 0.9
CLCNKA-203ENST00000439316 C22orf23Q9BZE7 217 aa20.69■□□□□ 0.9
CLCNKA-203ENST00000439316 RSPH6AQ9H0K4 717 aa20.69■□□□□ 0.9
CLCNKA-203ENST00000439316 FMN2Q9NZ56 1722 aa20.68■□□□□ 0.9
CLCNKA-203ENST00000439316 NWD1Q149M9 1564 aa20.68■□□□□ 0.9
CLCNKA-203ENST00000439316 ZNF428Q96B54 188 aa20.68■□□□□ 0.9
CLCNKA-203ENST00000439316 NME9Q86XW9 330 aa20.66■□□□□ 0.9
CLCNKA-203ENST00000439316 PRKAR2BP31323 418 aa20.66■□□□□ 0.9
CLCNKA-203ENST00000439316 MFAP1P55081 439 aaKnown RBP20.66■□□□□ 0.9
CLCNKA-203ENST00000439316 POLKQ9UBT6 870 aa20.66■□□□□ 0.9
CLCNKA-203ENST00000439316 ANKARQ7Z5J8 1434 aa20.65■□□□□ 0.9
CLCNKA-203ENST00000439316 ADGRL3Q9HAR2 1447 aa20.65■□□□□ 0.9
CLCNKA-203ENST00000439316 NUCB1Q02818 461 aa20.65■□□□□ 0.9
CLCNKA-203ENST00000439316 C14orf37Q86TY3 774 aa20.64■□□□□ 0.89
CLCNKA-203ENST00000439316 MAP2P11137 1827 aaKnown RBP20.64■□□□□ 0.89
CLCNKA-203ENST00000439316 ZRANB1Q9UGI0 708 aa20.63■□□□□ 0.89
CLCNKA-203ENST00000439316 USP6P35125 1406 aa20.63■□□□□ 0.89
CLCNKA-203ENST00000439316 NFE2L2Q16236 605 aa20.63■□□□□ 0.89
CLCNKA-203ENST00000439316 PROSER2Q86WR7 435 aaPredicted RBP20.63■□□□□ 0.89
CLCNKA-203ENST00000439316 NRKQ7Z2Y5 1582 aa20.62■□□□□ 0.89
CLCNKA-203ENST00000439316 NGDNQ8NEJ9 315 aaKnown RBP20.62■□□□□ 0.89
CLCNKA-203ENST00000439316 CDK12Q9NYV4 1490 aaPredicted RBP20.62■□□□□ 0.89
CLCNKA-203ENST00000439316 STRCQ7RTU9 1775 aa20.62■□□□□ 0.89
CLCNKA-203ENST00000439316 TTC21BQ7Z4L5 1316 aa20.61■□□□□ 0.89
CLCNKA-203ENST00000439316 STRCP1A6NGW2 1772 aa20.61■□□□□ 0.89
CLCNKA-203ENST00000439316 FBLN1P23142 703 aa20.6■□□□□ 0.89
CLCNKA-203ENST00000439316 CALD1Q05682 793 aaKnown RBP20.6■□□□□ 0.89
CLCNKA-203ENST00000439316 ARHGAP45Q92619 1136 aa20.6■□□□□ 0.89
CLCNKA-203ENST00000439316 CHD1LQ86WJ1 897 aa20.59■□□□□ 0.89
CLCNKA-203ENST00000439316 MRPL50Q8N5N7 158 aaKnown RBP20.59■□□□□ 0.89
CLCNKA-203ENST00000439316 COG3Q96JB2 828 aa20.59■□□□□ 0.89
CLCNKA-203ENST00000439316 PHACTR3Q96KR7 559 aa20.59■□□□□ 0.89
CLCNKA-203ENST00000439316 CHMP5Q9NZZ3 219 aa20.59■□□□□ 0.89
CLCNKA-203ENST00000439316 NCOA3Q9Y6Q9 1424 aa20.59■□□□□ 0.89
CLCNKA-203ENST00000439316 VAMP4O75379 141 aa20.58■□□□□ 0.89
CLCNKA-203ENST00000439316 RBM25P49756 843 aaKnown RBP20.58■□□□□ 0.89
CLCNKA-203ENST00000439316 IFT57Q9NWB7 429 aa20.58■□□□□ 0.89
CLCNKA-203ENST00000439316 SSH2Q76I76 1423 aa20.57■□□□□ 0.88
CLCNKA-203ENST00000439316 AATKQ6ZMQ8 1374 aa20.57■□□□□ 0.88
CLCNKA-203ENST00000439316 CHMP4BQ9H444 224 aaKnown RBP20.57■□□□□ 0.88
CLCNKA-203ENST00000439316 ZBTB7BO15156 539 aaPredicted RBP20.57■□□□□ 0.88
CLCNKA-203ENST00000439316 MCM4P33991 863 aa20.57■□□□□ 0.88
CLCNKA-203ENST00000439316 IL13P35225 146 aa20.57■□□□□ 0.88
CLCNKA-203ENST00000439316 LNPKQ9C0E8 428 aa20.57■□□□□ 0.88
CLCNKA-203ENST00000439316 ZNF853P0CG23 659 aa20.56■□□□□ 0.88
CLCNKA-203ENST00000439316 GNAI1P63096 354 aa20.56■□□□□ 0.88
CLCNKA-203ENST00000439316 HMOX1P09601 288 aa20.55■□□□□ 0.88
CLCNKA-203ENST00000439316 BMP2KLQ5H9B9 411 aa20.55■□□□□ 0.88
CLCNKA-203ENST00000439316 L1TD1Q5T7N2 865 aaKnown RBP20.55■□□□□ 0.88
CLCNKA-203ENST00000439316 HSCBQ8IWL3 235 aa20.55■□□□□ 0.88
CLCNKA-203ENST00000439316 SPRYD3Q8NCJ5 442 aa20.55■□□□□ 0.88
CLCNKA-203ENST00000439316 ABCC4O15439 1325 aa20.55■□□□□ 0.88
CLCNKA-203ENST00000439316 GCC1Q96CN9 775 aa20.55■□□□□ 0.88
CLCNKA-203ENST00000439316 THUMPD2Q9BTF0 503 aaKnown RBP20.55■□□□□ 0.88
CLCNKA-203ENST00000439316 PHF8Q9UPP1 1060 aa20.55■□□□□ 0.88
CLCNKA-203ENST00000439316 EMILIN1Q9Y6C2 1016 aa20.55■□□□□ 0.88
CLCNKA-203ENST00000439316 DLG5Q8TDM6 1919 aa20.55■□□□□ 0.88
CLCNKA-203ENST00000439316 TSPYL6Q8N831 410 aa20.54■□□□□ 0.88
CLCNKA-203ENST00000439316 SNX21Q969T3 373 aa20.54■□□□□ 0.88
CLCNKA-203ENST00000439316 TMEM94Q12767 1356 aa20.53■□□□□ 0.88
CLCNKA-203ENST00000439316 ESCO1Q5FWF5 840 aa20.53■□□□□ 0.88
CLCNKA-203ENST00000439316 TTC21AQ8NDW8 1320 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms