RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 API5Q9BZZ5 524 aaKnown RBP13.1□□□□□ -0.31
TCOF1-204ENST00000427724 APBA3O96018 575 aa13.09□□□□□ -0.31
TCOF1-204ENST00000427724 ZNF622Q969S3 477 aaKnown RBP eCLIP13.09□□□□□ -0.311e-6■■□□□ 12.8
TCOF1-204ENST00000427724 MPHOSPH8Q99549 860 aa13.09□□□□□ -0.31
TCOF1-204ENST00000427724 CNNM1Q9NRU3 951 aa13.09□□□□□ -0.31
TCOF1-204ENST00000427724 ZNF652Q9Y2D9 606 aa13.09□□□□□ -0.31
TCOF1-204ENST00000427724 FYB1O15117 783 aa13.09□□□□□ -0.31
TCOF1-204ENST00000427724 IL2RBP14784 551 aa13.09□□□□□ -0.31
TCOF1-204ENST00000427724 TCOF1Q13428 1488 aaKnown RBP13.09□□□□□ -0.31
TCOF1-204ENST00000427724 RBM5P52756 815 aaKnown RBP eCLIP13.08□□□□□ -0.31
TCOF1-204ENST00000427724 SLC4A2P04920 1241 aa13.08□□□□□ -0.32
TCOF1-204ENST00000427724 ATP7AQ04656 1500 aa13.07□□□□□ -0.32
TCOF1-204ENST00000427724 CLSTN1O94985 981 aa13.07□□□□□ -0.32
TCOF1-204ENST00000427724 AMER1Q5JTC6 1135 aaPredicted RBP13.07□□□□□ -0.32
TCOF1-204ENST00000427724 AMOTL1Q8IY63 956 aa13.07□□□□□ -0.32
TCOF1-204ENST00000427724 ATP6V1AP38606 617 aa13.07□□□□□ -0.32
TCOF1-204ENST00000427724 STK32BQ9NY57 414 aa13.07□□□□□ -0.32
TCOF1-204ENST00000427724 IFIT2P09913 472 aaKnown RBP13.06□□□□□ -0.32
TCOF1-204ENST00000427724 TWISTNBQ3B726 338 aaPredicted RBP13.06□□□□□ -0.32
TCOF1-204ENST00000427724 TSR2Q969E8 191 aaKnown RBP13.06□□□□□ -0.32
TCOF1-204ENST00000427724 UBTFL1P0CB47 393 aaPredicted RBP13.06□□□□□ -0.32
TCOF1-204ENST00000427724 GPTP24298 496 aa13.06□□□□□ -0.32
TCOF1-204ENST00000427724 DNTTIP2Q5QJE6 756 aaKnown RBP13.06□□□□□ -0.32
TCOF1-204ENST00000427724 ZNF772Q68DY9 489 aaPredicted RBP13.06□□□□□ -0.32
TCOF1-204ENST00000427724 RILPL2Q969X0 211 aa13.06□□□□□ -0.32
TCOF1-204ENST00000427724 MCCP23508 829 aa13.05□□□□□ -0.32
TCOF1-204ENST00000427724 VPS53Q5VIR6 699 aa13.05□□□□□ -0.32
TCOF1-204ENST00000427724 CDK11BP21127 795 aaKnown RBP13.05□□□□□ -0.32
TCOF1-204ENST00000427724 CCAR1Q8IX12 1150 aaKnown RBP13.05□□□□□ -0.32
TCOF1-204ENST00000427724 TRPC5Q9UL62 973 aaPredicted RBP13.05□□□□□ -0.32
TCOF1-204ENST00000427724 GNL2Q13823 731 aaKnown RBP13.05□□□□□ -0.32
TCOF1-204ENST00000427724 FOXD4L1Q9NU39 408 aa13.05□□□□□ -0.32
TCOF1-204ENST00000427724 FAM182BQ5T319 152 aa13.04□□□□□ -0.32
TCOF1-204ENST00000427724 MAGI3Q5TCQ9 1506 aa13.04□□□□□ -0.32
TCOF1-204ENST00000427724 NPHP4O75161 1426 aaPredicted RBP13.04□□□□□ -0.32
TCOF1-204ENST00000427724 FCHSD2O94868 740 aa13.04□□□□□ -0.32
TCOF1-204ENST00000427724 EXOSC9Q06265 439 aaKnown RBP13.04□□□□□ -0.32
TCOF1-204ENST00000427724 MSNP26038 577 aaKnown RBP13.04□□□□□ -0.32
TCOF1-204ENST00000427724 GRM1Q13255 1194 aa13.04□□□□□ -0.32
TCOF1-204ENST00000427724 TTC21AQ8NDW8 1320 aa13.04□□□□□ -0.32
TCOF1-204ENST00000427724 PTMAP06454 111 aaKnown RBP13.03□□□□□ -0.32
TCOF1-204ENST00000427724 ZBTB3Q9H5J0 574 aa13.03□□□□□ -0.32
TCOF1-204ENST00000427724 PPIP5K1Q6PFW1 1433 aa13.03□□□□□ -0.32
TCOF1-204ENST00000427724 ANKRD45Q5TZF3 282 aa13.03□□□□□ -0.32
TCOF1-204ENST00000427724 SMARCC1Q92922 1105 aaPredicted RBP13.03□□□□□ -0.32
TCOF1-204ENST00000427724 DHX16O60231 1041 aaKnown RBP13.02□□□□□ -0.32
TCOF1-204ENST00000427724 FMNL2Q96PY5 1086 aa13.02□□□□□ -0.32
TCOF1-204ENST00000427724 ZRSR1Q15695 479 aaKnown RBP13.02□□□□□ -0.33
TCOF1-204ENST00000427724 RPGRQ92834 1020 aaKnown RBP13.02□□□□□ -0.33
TCOF1-204ENST00000427724 SLC39A6Q13433 755 aa13.02□□□□□ -0.33
TCOF1-204ENST00000427724 CCDC57Q2TAC2 916 aa13.01□□□□□ -0.33
TCOF1-204ENST00000427724 DZIP1LQ8IYY4 767 aaKnown RBP13.01□□□□□ -0.33
TCOF1-204ENST00000427724 TAF7Q15545 349 aaPredicted RBP13.01□□□□□ -0.33
TCOF1-204ENST00000427724 RIMBP3CA6NJZ7 1639 aa13.01□□□□□ -0.33
TCOF1-204ENST00000427724 RIMBP3BA6NNM3 1639 aa13.01□□□□□ -0.33
TCOF1-204ENST00000427724 RIMBP3Q9UFD9 1639 aa13.01□□□□□ -0.33
TCOF1-204ENST00000427724 FAM43AQ8N2R8 423 aa13.01□□□□□ -0.33
TCOF1-204ENST00000427724 TRMT112Q9UI30 125 aaKnown RBP13.01□□□□□ -0.33
TCOF1-204ENST00000427724 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.01□□□□□ -0.33
TCOF1-204ENST00000427724 C6orf229H3BNL8 230 aa13□□□□□ -0.33
TCOF1-204ENST00000427724 SLFN5Q08AF3 891 aa13□□□□□ -0.33
TCOF1-204ENST00000427724 MTMR7Q9Y216 660 aa13□□□□□ -0.33
TCOF1-204ENST00000427724 PZPP20742 1482 aa13□□□□□ -0.33
TCOF1-204ENST00000427724 SIL1Q9H173 461 aa13□□□□□ -0.33
TCOF1-204ENST00000427724 NFE2L2Q16236 605 aa12.99□□□□□ -0.33
TCOF1-204ENST00000427724 WASHC4Q2M389 1173 aa12.99□□□□□ -0.33
TCOF1-204ENST00000427724 RALGAPBQ86X10 1494 aa12.99□□□□□ -0.33
TCOF1-204ENST00000427724 SURF6O75683 361 aaKnown RBP12.99□□□□□ -0.33
TCOF1-204ENST00000427724 LRRFIP1Q32MZ4 808 aaKnown RBP12.99□□□□□ -0.33
TCOF1-204ENST00000427724 ANKIB1Q9P2G1 1089 aa12.99□□□□□ -0.33
TCOF1-204ENST00000427724 CCNL1Q9UK58 526 aaPredicted RBP12.99□□□□□ -0.33
TCOF1-204ENST00000427724 RTCBQ9Y3I0 505 aaKnown RBP12.99□□□□□ -0.33
TCOF1-204ENST00000427724 ITSN2Q9NZM3 1697 aa12.99□□□□□ -0.33
TCOF1-204ENST00000427724 MAGI2Q86UL8 1455 aa12.99□□□□□ -0.33
TCOF1-204ENST00000427724 NBPF6Q5VWK0 638 aa12.99□□□□□ -0.33
TCOF1-204ENST00000427724 DUSP27Q5VZP5 1158 aa12.99□□□□□ -0.33
TCOF1-204ENST00000427724 NBPF5PQ86XG9 351 aaPredicted RBP12.99□□□□□ -0.33
TCOF1-204ENST00000427724 NBPF4Q96M43 638 aa12.99□□□□□ -0.33
TCOF1-204ENST00000427724 CLEC11AQ9Y240 323 aa12.99□□□□□ -0.33
TCOF1-204ENST00000427724 TTLL12Q14166 644 aaPredicted RBP12.98□□□□□ -0.33
TCOF1-204ENST00000427724 ZSCAN29Q8IWY8 852 aaPredicted RBP12.98□□□□□ -0.33
TCOF1-204ENST00000427724 SCAF11Q99590 1463 aaKnown RBP12.98□□□□□ -0.33
TCOF1-204ENST00000427724 IGHMBP2P38935 993 aaKnown RBP12.98□□□□□ -0.33
TCOF1-204ENST00000427724 SRCIN1Q9C0H9 1055 aa12.98□□□□□ -0.33
TCOF1-204ENST00000427724 YTHDC2Q9H6S0 1430 aaKnown RBP12.97□□□□□ -0.33
TCOF1-204ENST00000427724 GPR162Q16538 588 aa12.97□□□□□ -0.33
TCOF1-204ENST00000427724 SAMD9Q5K651 1589 aa12.97□□□□□ -0.33
TCOF1-204ENST00000427724 HSPA1LP34931 641 aa12.97□□□□□ -0.33
TCOF1-204ENST00000427724 PRIM1P49642 420 aaKnown RBP12.97□□□□□ -0.33
TCOF1-204ENST00000427724 CHAF1AQ13111 956 aaPredicted RBP12.97□□□□□ -0.33
TCOF1-204ENST00000427724 GNPATO15228 680 aa12.97□□□□□ -0.33
TCOF1-204ENST00000427724 MARCH6O60337 910 aa12.97□□□□□ -0.33
TCOF1-204ENST00000427724 PDE3AQ14432 1141 aa12.97□□□□□ -0.33
TCOF1-204ENST00000427724 PDZRN3Q9UPQ7 1066 aa12.97□□□□□ -0.33
TCOF1-204ENST00000427724 TEX13AQ9BXU3 409 aaPredicted RBP12.96□□□□□ -0.33
TCOF1-204ENST00000427724 GNL3LQ9NVN8 582 aaKnown RBP12.96□□□□□ -0.33
TCOF1-204ENST00000427724 KIF16BQ96L93 1317 aa12.96□□□□□ -0.33
TCOF1-204ENST00000427724 GBP4Q96PP9 640 aa12.96□□□□□ -0.33
TCOF1-204ENST00000427724 NPATQ14207 1427 aa12.96□□□□□ -0.33
TCOF1-204ENST00000427724 TMPOP42166 694 aaKnown RBP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms