RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 VAMP4O75379 141 aa12.26□□□□□ -0.45
CD44-206ENST00000415148 PRKAR2BP31323 418 aa12.26□□□□□ -0.45
CD44-206ENST00000415148 MRPL50Q8N5N7 158 aaKnown RBP12.26□□□□□ -0.45
CD44-206ENST00000415148 IFT57Q9NWB7 429 aa12.26□□□□□ -0.45
CD44-206ENST00000415148 ERBB4Q15303 1308 aa12.26□□□□□ -0.45
CD44-206ENST00000415148 CD2BP2O95400 341 aaKnown RBP12.26□□□□□ -0.45
CD44-206ENST00000415148 DDIT3P35638 169 aa12.26□□□□□ -0.45
CD44-206ENST00000415148 CIZ1Q9ULV3 898 aaPredicted RBP12.26□□□□□ -0.45
CD44-206ENST00000415148 KIF24Q5T7B8 1368 aa12.25□□□□□ -0.45
CD44-206ENST00000415148 DDX11L8A8MPP1 907 aa12.25□□□□□ -0.45
CD44-206ENST00000415148 ZNF853P0CG23 659 aa12.25□□□□□ -0.45
CD44-206ENST00000415148 GAS2L3Q86XJ1 694 aa12.25□□□□□ -0.45
CD44-206ENST00000415148 LNPKQ9C0E8 428 aa12.25□□□□□ -0.45
CD44-206ENST00000415148 FOXD4L1Q9NU39 408 aa12.25□□□□□ -0.45
CD44-206ENST00000415148 AATKQ6ZMQ8 1374 aa12.25□□□□□ -0.45
CD44-206ENST00000415148 LMOD3Q0VAK6 560 aa12.25□□□□□ -0.45
CD44-206ENST00000415148 ISY1Q9ULR0 285 aaKnown RBP12.25□□□□□ -0.45
CD44-206ENST00000415148 CPSF1Q10570 1443 aaKnown RBP12.24□□□□□ -0.45
CD44-206ENST00000415148 EDC4Q6P2E9 1401 aaKnown RBP12.24□□□□□ -0.45
CD44-206ENST00000415148 MAP2P11137 1827 aaKnown RBP12.24□□□□□ -0.45
CD44-206ENST00000415148 CFAP44Q96MT7 982 aa12.23□□□□□ -0.45
CD44-206ENST00000415148 CDK12Q9NYV4 1490 aaPredicted RBP12.23□□□□□ -0.45
CD44-206ENST00000415148 PTMSP20962 102 aa12.23□□□□□ -0.45
CD44-206ENST00000415148 IL13P35225 146 aa12.23□□□□□ -0.45
CD44-206ENST00000415148 KIF2CQ99661 725 aa12.23□□□□□ -0.45
CD44-206ENST00000415148 ABCC4O15439 1325 aa12.23□□□□□ -0.45
CD44-206ENST00000415148 FBLN1P23142 703 aa12.22□□□□□ -0.45
CD44-206ENST00000415148 TNPO1Q92973 898 aaKnown RBP12.22□□□□□ -0.45
CD44-206ENST00000415148 SETD1AO15047 1707 aaKnown RBP12.22□□□□□ -0.45
CD44-206ENST00000415148 PHACTR3Q96KR7 559 aa12.22□□□□□ -0.45
CD44-206ENST00000415148 NAP1L5Q96NT1 182 aaPredicted RBP12.22□□□□□ -0.45
CD44-206ENST00000415148 RBM42Q9BTD8 480 aaKnown RBP12.22□□□□□ -0.45
CD44-206ENST00000415148 C1orf115Q9H7X2 142 aa12.22□□□□□ -0.45
CD44-206ENST00000415148 STAG3Q9UJ98 1225 aa12.22□□□□□ -0.45
CD44-206ENST00000415148 AGLP35573 1532 aa12.22□□□□□ -0.45
CD44-206ENST00000415148 ANKRD45Q5TZF3 282 aa12.21□□□□□ -0.45
CD44-206ENST00000415148 FBXO31Q5XUX0 539 aaPredicted RBP12.21□□□□□ -0.45
CD44-206ENST00000415148 API5Q9BZZ5 524 aaKnown RBP12.21□□□□□ -0.45
CD44-206ENST00000415148 GRPEL1Q9HAV7 217 aa12.21□□□□□ -0.45
CD44-206ENST00000415148 DIP2BQ9P265 1576 aa12.21□□□□□ -0.45
CD44-206ENST00000415148 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.21□□□□□ -0.46
CD44-206ENST00000415148 SIRT1Q96EB6 747 aa12.21□□□□□ -0.46
CD44-206ENST00000415148 A2ML1A8K2U0 1454 aa12.2□□□□□ -0.46
CD44-206ENST00000415148 CLCN1P35523 988 aa12.2□□□□□ -0.46
CD44-206ENST00000415148 MRE11P49959 708 aa12.2□□□□□ -0.46
CD44-206ENST00000415148 SPATA31D1Q6ZQQ2 1576 aa12.2□□□□□ -0.46
CD44-206ENST00000415148 HAP1P54257 671 aaPredicted RBP12.2□□□□□ -0.46
CD44-206ENST00000415148 MBIPQ9NS73 344 aa12.2□□□□□ -0.46
CD44-206ENST00000415148 AK9Q5TCS8 1911 aa12.19□□□□□ -0.46
CD44-206ENST00000415148 WASLO00401 505 aaPredicted RBP12.19□□□□□ -0.46
CD44-206ENST00000415148 SKOR2Q2VWA4 1001 aaPredicted RBP12.19□□□□□ -0.46
CD44-206ENST00000415148 TWISTNBQ3B726 338 aaPredicted RBP12.19□□□□□ -0.46
CD44-206ENST00000415148 TSPYL6Q8N831 410 aa12.19□□□□□ -0.46
CD44-206ENST00000415148 GBP4Q96PP9 640 aa12.19□□□□□ -0.46
CD44-206ENST00000415148 THUMPD2Q9BTF0 503 aaKnown RBP12.19□□□□□ -0.46
CD44-206ENST00000415148 RIMS2Q9UQ26 1411 aa12.19□□□□□ -0.46
CD44-206ENST00000415148 HMOX1P09601 288 aa12.18□□□□□ -0.46
CD44-206ENST00000415148 WAPLQ7Z5K2 1190 aa12.18□□□□□ -0.46
CD44-206ENST00000415148 SIRT2Q8IXJ6 389 aa12.18□□□□□ -0.46
CD44-206ENST00000415148 KIF13AQ9H1H9 1805 aa12.18□□□□□ -0.46
CD44-206ENST00000415148 HSP90AB1P08238 724 aaKnown RBP12.18□□□□□ -0.46
CD44-206ENST00000415148 RAB3GAP1Q15042 981 aa12.18□□□□□ -0.46
CD44-206ENST00000415148 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.18□□□□□ -0.46
CD44-206ENST00000415148 MON2Q7Z3U7 1717 aa12.17□□□□□ -0.46
CD44-206ENST00000415148 DLG5Q8TDM6 1919 aa12.17□□□□□ -0.46
CD44-206ENST00000415148 TBC1D9Q6ZT07 1266 aa12.17□□□□□ -0.46
CD44-206ENST00000415148 EMILIN1Q9Y6C2 1016 aa12.17□□□□□ -0.46
CD44-206ENST00000415148 CDC45O75419 566 aa12.16□□□□□ -0.46
CD44-206ENST00000415148 COG3Q96JB2 828 aa12.16□□□□□ -0.46
CD44-206ENST00000415148 KNDC1Q76NI1 1749 aa12.16□□□□□ -0.46
CD44-206ENST00000415148 K7ELQ4 463 aaPredicted RBP12.16□□□□□ -0.46
CD44-206ENST00000415148 SSFA2P28290 1259 aa12.16□□□□□ -0.46
CD44-206ENST00000415148 INTS3Q68E01 1043 aaKnown RBP12.16□□□□□ -0.46
CD44-206ENST00000415148 CLEC17AQ6ZS10 378 aa12.15□□□□□ -0.46
CD44-206ENST00000415148 GAS2L2Q8NHY3 880 aa12.15□□□□□ -0.46
CD44-206ENST00000415148 DCTPP1Q9H773 170 aa12.15□□□□□ -0.46
CD44-206ENST00000415148 AKAP12Q02952 1782 aa12.15□□□□□ -0.46
CD44-206ENST00000415148 ELL2O00472 640 aaPredicted RBP12.15□□□□□ -0.46
CD44-206ENST00000415148 C8orf58Q8NAV2 365 aa12.15□□□□□ -0.46
CD44-206ENST00000415148 CCDC61Q9Y6R9 512 aa12.15□□□□□ -0.46
CD44-206ENST00000415148 C3P01024 1663 aa12.14□□□□□ -0.47
CD44-206ENST00000415148 NRXN3Q9Y4C0 1643 aa12.14□□□□□ -0.47
CD44-206ENST00000415148 ESPNB1AK53 854 aa12.14□□□□□ -0.47
CD44-206ENST00000415148 NME9Q86XW9 330 aa12.14□□□□□ -0.47
CD44-206ENST00000415148 NUDT16Q96DE0 195 aaKnown RBP12.14□□□□□ -0.47
CD44-206ENST00000415148 TECPR2O15040 1411 aa12.14□□□□□ -0.47
CD44-206ENST00000415148 NRKQ7Z2Y5 1582 aa12.14□□□□□ -0.47
CD44-206ENST00000415148 RPAP2Q8IXW5 612 aaPredicted RBP12.14□□□□□ -0.47
CD44-206ENST00000415148 HDGFP51858 240 aaKnown RBP12.13□□□□□ -0.47
CD44-206ENST00000415148 HSP90AA1P07900 732 aaKnown RBP12.13□□□□□ -0.47
CD44-206ENST00000415148 PLEKHM2Q8IWE5 1019 aa12.13□□□□□ -0.47
CD44-206ENST00000415148 KIAA0232Q92628 1395 aa12.13□□□□□ -0.47
CD44-206ENST00000415148 ITSN1Q15811 1721 aa12.13□□□□□ -0.47
CD44-206ENST00000415148 ANKRD44Q8N8A2 993 aa12.12□□□□□ -0.47
CD44-206ENST00000415148 CPS1P31327 1500 aa12.12□□□□□ -0.47
CD44-206ENST00000415148 RABEP1Q15276 862 aa12.12□□□□□ -0.47
CD44-206ENST00000415148 PTPRCP08575 1304 aa12.11□□□□□ -0.47
CD44-206ENST00000415148 TTC22Q5TAA0 569 aa12.11□□□□□ -0.47
CD44-206ENST00000415148 GOLGA6L22H0YM25 854 aa12.11□□□□□ -0.47
CD44-206ENST00000415148 CHL1O00533 1208 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms