RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 NME9Q86XW9 330 aa12.49□□□□□ -0.41
SS18-203ENST00000415083 FSD2A1L4K1 749 aa12.49□□□□□ -0.41
SS18-203ENST00000415083 METP08581 1390 aa12.49□□□□□ -0.41
SS18-203ENST00000415083 TSPOAP1O95153 1857 aa12.48□□□□□ -0.41
SS18-203ENST00000415083 RBM25P49756 843 aaKnown RBP12.48□□□□□ -0.41
SS18-203ENST00000415083 MBIPQ9NS73 344 aa12.48□□□□□ -0.41
SS18-203ENST00000415083 FAM83GA6ND36 823 aa12.48□□□□□ -0.41
SS18-203ENST00000415083 MCM4P33991 863 aa12.48□□□□□ -0.41
SS18-203ENST00000415083 RRAGDQ9NQL2 400 aaPredicted RBP12.48□□□□□ -0.41
SS18-203ENST00000415083 PEAK1Q9H792 1746 aa12.48□□□□□ -0.41
SS18-203ENST00000415083 CHD1LQ86WJ1 897 aa12.47□□□□□ -0.41
SS18-203ENST00000415083 C8orf58Q8NAV2 365 aa12.47□□□□□ -0.41
SS18-203ENST00000415083 RGS12O14924 1447 aa12.47□□□□□ -0.41
SS18-203ENST00000415083 NRKQ7Z2Y5 1582 aa12.47□□□□□ -0.41
SS18-203ENST00000415083 NFE2L2Q16236 605 aa12.47□□□□□ -0.41
SS18-203ENST00000415083 ARXQ96QS3 562 aa12.47□□□□□ -0.41
SS18-203ENST00000415083 ABCC4O15439 1325 aa12.47□□□□□ -0.41
SS18-203ENST00000415083 CDK12Q9NYV4 1490 aaPredicted RBP12.47□□□□□ -0.41
SS18-203ENST00000415083 KIF16BQ96L93 1317 aa12.47□□□□□ -0.41
SS18-203ENST00000415083 PANK2Q9BZ23 570 aa12.46□□□□□ -0.41
SS18-203ENST00000415083 REREQ9P2R6 1566 aa12.46□□□□□ -0.41
SS18-203ENST00000415083 XRCC6P12956 609 aaKnown RBP eCLIP12.46□□□□□ -0.41
SS18-203ENST00000415083 RIMS2Q9UQ26 1411 aa12.46□□□□□ -0.42
SS18-203ENST00000415083 ELL2O00472 640 aaPredicted RBP12.46□□□□□ -0.42
SS18-203ENST00000415083 HDGFL2Q7Z4V5 671 aaPredicted RBP12.46□□□□□ -0.42
SS18-203ENST00000415083 DIP2BQ9P265 1576 aa12.46□□□□□ -0.42
SS18-203ENST00000415083 RGPD1P0DJD0 1748 aa12.45□□□□□ -0.42
SS18-203ENST00000415083 DCTN1Q14203 1278 aa12.45□□□□□ -0.42
SS18-203ENST00000415083 RBM42Q9BTD8 480 aaKnown RBP12.45□□□□□ -0.42
SS18-203ENST00000415083 AK9Q5TCS8 1911 aa12.45□□□□□ -0.42
SS18-203ENST00000415083 RIMS1Q86UR5 1692 aaKnown RBP12.45□□□□□ -0.42
SS18-203ENST00000415083 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.44□□□□□ -0.42
SS18-203ENST00000415083 RRS1Q15050 365 aaKnown RBP12.44□□□□□ -0.42
SS18-203ENST00000415083 KRT24Q2M2I5 525 aa12.44□□□□□ -0.42
SS18-203ENST00000415083 UPF2Q9HAU5 1272 aaKnown RBP12.44□□□□□ -0.42
SS18-203ENST00000415083 PRR36Q9H6K5 1346 aa12.44□□□□□ -0.42
SS18-203ENST00000415083 EDC4Q6P2E9 1401 aaKnown RBP12.44□□□□□ -0.42
SS18-203ENST00000415083 GSPT1P15170 499 aaKnown RBP12.44□□□□□ -0.42
SS18-203ENST00000415083 AGLP35573 1532 aa12.44□□□□□ -0.42
SS18-203ENST00000415083 ITSN1Q15811 1721 aa12.43□□□□□ -0.42
SS18-203ENST00000415083 BMP2KLQ5H9B9 411 aa12.43□□□□□ -0.42
SS18-203ENST00000415083 TOPAZ1Q8N9V7 1692 aa12.43□□□□□ -0.42
SS18-203ENST00000415083 ATP10DQ9P241 1426 aa12.42□□□□□ -0.42
SS18-203ENST00000415083 AATKQ6ZMQ8 1374 aa12.42□□□□□ -0.42
SS18-203ENST00000415083 TBC1D9Q6ZT07 1266 aa12.42□□□□□ -0.42
SS18-203ENST00000415083 NALCNQ8IZF0 1738 aa12.42□□□□□ -0.42
SS18-203ENST00000415083 AEBP1Q8IUX7 1158 aa12.42□□□□□ -0.42
SS18-203ENST00000415083 SNX21Q969T3 373 aa12.42□□□□□ -0.42
SS18-203ENST00000415083 IFT57Q9NWB7 429 aa12.42□□□□□ -0.42
SS18-203ENST00000415083 TUBGCP6Q96RT7 1819 aa12.42□□□□□ -0.42
SS18-203ENST00000415083 WASLO00401 505 aaPredicted RBP12.42□□□□□ -0.42
SS18-203ENST00000415083 FAM43AQ8N2R8 423 aa12.42□□□□□ -0.42
SS18-203ENST00000415083 ARHGAP45Q92619 1136 aa12.42□□□□□ -0.42
SS18-203ENST00000415083 GZF1Q9H116 711 aaPredicted RBP12.42□□□□□ -0.42
SS18-203ENST00000415083 CHMP5Q9NZZ3 219 aa12.42□□□□□ -0.42
SS18-203ENST00000415083 ANKRD45Q5TZF3 282 aa12.41□□□□□ -0.42
SS18-203ENST00000415083 IPO8O15397 1037 aaKnown RBP12.41□□□□□ -0.42
SS18-203ENST00000415083 TXNDC2Q86VQ3 553 aa12.4□□□□□ -0.42
SS18-203ENST00000415083 C16orf71Q8IYS4 520 aaPredicted RBP12.4□□□□□ -0.42
SS18-203ENST00000415083 TRAK2O60296 914 aa12.4□□□□□ -0.42
SS18-203ENST00000415083 OTUD7AQ8TE49 926 aaPredicted RBP12.4□□□□□ -0.42
SS18-203ENST00000415083 TWISTNBQ3B726 338 aaPredicted RBP12.39□□□□□ -0.43
SS18-203ENST00000415083 GAS2L3Q86XJ1 694 aa12.39□□□□□ -0.43
SS18-203ENST00000415083 TNPO1Q92973 898 aaKnown RBP12.39□□□□□ -0.43
SS18-203ENST00000415083 CFAP44Q96MT7 982 aa12.39□□□□□ -0.43
SS18-203ENST00000415083 TECPR2O15040 1411 aa12.39□□□□□ -0.43
SS18-203ENST00000415083 NUDT16Q96DE0 195 aaKnown RBP12.39□□□□□ -0.43
SS18-203ENST00000415083 PLEKHM2Q8IWE5 1019 aa12.38□□□□□ -0.43
SS18-203ENST00000415083 ZNF428Q96B54 188 aa12.38□□□□□ -0.43
SS18-203ENST00000415083 GAS2L2Q8NHY3 880 aa12.37□□□□□ -0.43
SS18-203ENST00000415083 UBR1Q8IWV7 1749 aa12.37□□□□□ -0.43
SS18-203ENST00000415083 ROBO2Q9HCK4 1378 aa12.37□□□□□ -0.43
SS18-203ENST00000415083 GNAI1P63096 354 aa12.37□□□□□ -0.43
SS18-203ENST00000415083 GCC1Q96CN9 775 aa12.37□□□□□ -0.43
SS18-203ENST00000415083 RAB3GAP1Q15042 981 aa12.37□□□□□ -0.43
SS18-203ENST00000415083 PNNQ9H307 717 aaKnown RBP12.37□□□□□ -0.43
SS18-203ENST00000415083 EIF4A2Q14240 407 aaKnown RBP12.36□□□□□ -0.43
SS18-203ENST00000415083 FOXD4L1Q9NU39 408 aa12.36□□□□□ -0.43
SS18-203ENST00000415083 OVOS2A0A0J9YW53 1432 aa12.36□□□□□ -0.43
SS18-203ENST00000415083 OVOS2Q6IE36 1432 aa12.36□□□□□ -0.43
SS18-203ENST00000415083 FMN2Q9NZ56 1722 aa12.35□□□□□ -0.43
SS18-203ENST00000415083 RGPD8O14715 1765 aaPredicted RBP12.35□□□□□ -0.43
SS18-203ENST00000415083 CRB1P82279 1406 aa12.35□□□□□ -0.43
SS18-203ENST00000415083 HSCBQ8IWL3 235 aa12.35□□□□□ -0.43
SS18-203ENST00000415083 MARF1Q9Y4F3 1742 aaKnown RBP12.35□□□□□ -0.43
SS18-203ENST00000415083 CYB5RLQ6IPT4 315 aa12.35□□□□□ -0.43
SS18-203ENST00000415083 DCTPP1Q9H773 170 aa12.35□□□□□ -0.43
SS18-203ENST00000415083 ERBB4Q15303 1308 aa12.35□□□□□ -0.43
SS18-203ENST00000415083 ADAMTS13Q76LX8 1427 aa12.34□□□□□ -0.43
SS18-203ENST00000415083 FAM69CQ0P6D2 419 aa12.34□□□□□ -0.43
SS18-203ENST00000415083 INTS3Q68E01 1043 aaKnown RBP12.34□□□□□ -0.43
SS18-203ENST00000415083 MCM10Q7L590 875 aa12.34□□□□□ -0.43
SS18-203ENST00000415083 MSH6P52701 1360 aa12.34□□□□□ -0.43
SS18-203ENST00000415083 MLECQ14165 292 aa12.34□□□□□ -0.43
SS18-203ENST00000415083 STAG3Q9UJ98 1225 aa12.34□□□□□ -0.43
SS18-203ENST00000415083 SSH2Q76I76 1423 aa12.33□□□□□ -0.44
SS18-203ENST00000415083 CHL1O00533 1208 aa12.33□□□□□ -0.44
SS18-203ENST00000415083 RTL1A6NKG5 1358 aa12.33□□□□□ -0.44
SS18-203ENST00000415083 GOLGA6L3A6NEY3 463 aa12.33□□□□□ -0.44
SS18-203ENST00000415083 SMARCA5O60264 1052 aaPredicted RBP12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms