RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NEURL4Q96JN8 1562 aa26.09■■□□□ 1.77
CTCF-202ENST00000401394 CFAP74Q9C0B2 1584 aa26.09■■□□□ 1.77
CTCF-202ENST00000401394 IL16Q14005 1332 aa26.08■■□□□ 1.77
CTCF-202ENST00000401394 ALDH1L2Q3SY69 923 aa26.07■■□□□ 1.76
CTCF-202ENST00000401394 ZGPATQ8N5A5 531 aaKnown RBP26.07■■□□□ 1.76
CTCF-202ENST00000401394 TWISTNBQ3B726 338 aaPredicted RBP26.07■■□□□ 1.76
CTCF-202ENST00000401394 NME9Q86XW9 330 aa26.07■■□□□ 1.76
CTCF-202ENST00000401394 ARHGEF28Q8N1W1 1705 aaKnown RBP26.07■■□□□ 1.76
CTCF-202ENST00000401394 BAG4O95429 457 aaKnown RBP26.07■■□□□ 1.76
CTCF-202ENST00000401394 FRMPD1Q5SYB0 1578 aa26.07■■□□□ 1.76
CTCF-202ENST00000401394 RPGRIP1LQ68CZ1 1315 aa26.06■■□□□ 1.76
CTCF-202ENST00000401394 FCHSD2O94868 740 aa26.06■■□□□ 1.76
CTCF-202ENST00000401394 PLEKHM2Q8IWE5 1019 aa26.06■■□□□ 1.76
CTCF-202ENST00000401394 RBM27Q9P2N5 1060 aaKnown RBP26.06■■□□□ 1.76
CTCF-202ENST00000401394 CAVIN1Q6NZI2 390 aaKnown RBP26.05■■□□□ 1.76
CTCF-202ENST00000401394 SIGLEC1Q9BZZ2 1709 aa26.05■■□□□ 1.76
CTCF-202ENST00000401394 LRRC7Q96NW7 1537 aa26.05■■□□□ 1.76
CTCF-202ENST00000401394 USP32Q8NFA0 1604 aa26.04■■□□□ 1.76
CTCF-202ENST00000401394 HSP90AA2PQ14568 343 aaPredicted RBP26.04■■□□□ 1.76
CTCF-202ENST00000401394 HDGFL2Q7Z4V5 671 aaPredicted RBP26.04■■□□□ 1.76
CTCF-202ENST00000401394 VSIG10Q8N0Z9 540 aa26.04■■□□□ 1.76
CTCF-202ENST00000401394 ZBTB7CA1YPR0 619 aa26.04■■□□□ 1.76
CTCF-202ENST00000401394 NFE2L2Q16236 605 aa26.04■■□□□ 1.76
CTCF-202ENST00000401394 TSHZ3Q63HK5 1081 aa26.04■■□□□ 1.76
CTCF-202ENST00000401394 NASPP49321 788 aaPredicted RBP26.03■■□□□ 1.76
CTCF-202ENST00000401394 GCC1Q96CN9 775 aa26.03■■□□□ 1.76
CTCF-202ENST00000401394 CDC45O75419 566 aa26.01■■□□□ 1.75
CTCF-202ENST00000401394 NCBP3Q53F19 620 aaKnown RBP26.01■■□□□ 1.75
CTCF-202ENST00000401394 NEXMIFQ5QGS0 1516 aa26■■□□□ 1.75
CTCF-202ENST00000401394 LMTK2Q8IWU2 1503 aa26■■□□□ 1.75
CTCF-202ENST00000401394 AEBP1Q8IUX7 1158 aa26■■□□□ 1.75
CTCF-202ENST00000401394 MIS18AQ9NYP9 233 aa26■■□□□ 1.75
CTCF-202ENST00000401394 CIZ1Q9ULV3 898 aaPredicted RBP26■■□□□ 1.75
CTCF-202ENST00000401394 ABCC3O15438 1527 aa26■■□□□ 1.75
CTCF-202ENST00000401394 POGZQ7Z3K3 1410 aa25.99■■□□□ 1.75
CTCF-202ENST00000401394 FOXD4L6Q3SYB3 417 aaPredicted RBP25.99■■□□□ 1.75
CTCF-202ENST00000401394 FOXD4L3Q6VB84 417 aaPredicted RBP25.99■■□□□ 1.75
CTCF-202ENST00000401394 PNPLA6Q8IY17 1366 aa25.99■■□□□ 1.75
CTCF-202ENST00000401394 NOL8Q76FK4 1167 aaKnown RBP25.99■■□□□ 1.75
CTCF-202ENST00000401394 NSFL1CQ9UNZ2 370 aaKnown RBP25.99■■□□□ 1.75
CTCF-202ENST00000401394 SOX12O15370 315 aa25.98■■□□□ 1.75
CTCF-202ENST00000401394 TPRNQ4KMQ1 711 aa25.98■■□□□ 1.75
CTCF-202ENST00000401394 ABCC4O15439 1325 aa25.97■■□□□ 1.75
CTCF-202ENST00000401394 PUS7Q96PZ0 661 aaKnown RBP25.97■■□□□ 1.75
CTCF-202ENST00000401394 PRPF40AO75400 957 aaKnown RBP25.96■■□□□ 1.75
CTCF-202ENST00000401394 FAM135BQ49AJ0 1406 aa25.96■■□□□ 1.75
CTCF-202ENST00000401394 YTHDC2Q9H6S0 1430 aaKnown RBP25.96■■□□□ 1.75
CTCF-202ENST00000401394 PTPRMP28827 1452 aa25.95■■□□□ 1.75
CTCF-202ENST00000401394 MED14O60244 1454 aa25.95■■□□□ 1.74
CTCF-202ENST00000401394 IL13P35225 146 aa25.95■■□□□ 1.74
CTCF-202ENST00000401394 MCM10Q7L590 875 aa25.95■■□□□ 1.74
CTCF-202ENST00000401394 USP26Q9BXU7 913 aa25.95■■□□□ 1.74
CTCF-202ENST00000401394 RBSNQ9H1K0 784 aa25.95■■□□□ 1.74
CTCF-202ENST00000401394 NUTM2FA1L443 756 aa25.95■■□□□ 1.74
CTCF-202ENST00000401394 SDSP20132 328 aa25.95■■□□□ 1.74
CTCF-202ENST00000401394 MLH3Q9UHC1 1453 aa25.94■■□□□ 1.74
CTCF-202ENST00000401394 RBM10P98175 930 aaKnown RBP25.94■■□□□ 1.74
CTCF-202ENST00000401394 ARID3AQ99856 593 aa25.94■■□□□ 1.74
CTCF-202ENST00000401394 KIAA1211Q6ZU35 1233 aa25.94■■□□□ 1.74
CTCF-202ENST00000401394 MPNDQ8N594 471 aa25.94■■□□□ 1.74
CTCF-202ENST00000401394 STAG3Q9UJ98 1225 aa25.94■■□□□ 1.74
CTCF-202ENST00000401394 DTNBO60941 627 aa25.93■■□□□ 1.74
CTCF-202ENST00000401394 PRIM1P49642 420 aaKnown RBP25.93■■□□□ 1.74
CTCF-202ENST00000401394 MEIS3Q99687 375 aa25.93■■□□□ 1.74
CTCF-202ENST00000401394 GNAI1P63096 354 aa25.93■■□□□ 1.74
CTCF-202ENST00000401394 TTC22Q5TAA0 569 aa25.93■■□□□ 1.74
CTCF-202ENST00000401394 ZNF853P0CG23 659 aa25.92■■□□□ 1.74
CTCF-202ENST00000401394 ZDHHC9Q9Y397 364 aa25.92■■□□□ 1.74
CTCF-202ENST00000401394 HECW2Q9P2P5 1572 aa25.92■■□□□ 1.74
CTCF-202ENST00000401394 SKOR2Q2VWA4 1001 aaPredicted RBP25.92■■□□□ 1.74
CTCF-202ENST00000401394 LMBRD1Q9NUN5 540 aa25.92■■□□□ 1.74
CTCF-202ENST00000401394 NEO1Q92859 1461 aa25.92■■□□□ 1.74
CTCF-202ENST00000401394 ZSCAN23Q3MJ62 389 aa25.92■■□□□ 1.74
CTCF-202ENST00000401394 KLHL40Q2TBA0 621 aa25.91■■□□□ 1.74
CTCF-202ENST00000401394 GPT2Q8TD30 523 aa25.91■■□□□ 1.74
CTCF-202ENST00000401394 IFT57Q9NWB7 429 aa25.91■■□□□ 1.74
CTCF-202ENST00000401394 DCTPP1Q9H773 170 aa25.9■■□□□ 1.74
CTCF-202ENST00000401394 F6X3S4 739 aa25.9■■□□□ 1.74
CTCF-202ENST00000401394 RNF214Q8ND24 703 aa25.89■■□□□ 1.74
CTCF-202ENST00000401394 PTCH1Q13635 1447 aa25.89■■□□□ 1.73
CTCF-202ENST00000401394 GOLGA6L22H0YM25 854 aa25.89■■□□□ 1.73
CTCF-202ENST00000401394 CFAP44Q96MT7 982 aa25.89■■□□□ 1.73
CTCF-202ENST00000401394 ARHGAP45Q92619 1136 aa25.88■■□□□ 1.73
CTCF-202ENST00000401394 ZMYND15Q9H091 742 aa25.88■■□□□ 1.73
CTCF-202ENST00000401394 BRPF1P55201 1214 aaPredicted RBP25.88■■□□□ 1.73
CTCF-202ENST00000401394 XPCQ01831 940 aaPredicted RBP25.88■■□□□ 1.73
CTCF-202ENST00000401394 SLC4A10Q6U841 1118 aa25.87■■□□□ 1.73
CTCF-202ENST00000401394 KNDC1Q76NI1 1749 aa25.87■■□□□ 1.73
CTCF-202ENST00000401394 CALD1Q05682 793 aaKnown RBP25.86■■□□□ 1.73
CTCF-202ENST00000401394 MYO5BQ9ULV0 1848 aa25.86■■□□□ 1.73
CTCF-202ENST00000401394 PIK3C2BO00750 1634 aa25.86■■□□□ 1.73
CTCF-202ENST00000401394 CYB5RLQ6IPT4 315 aa25.86■■□□□ 1.73
CTCF-202ENST00000401394 CEP85Q6P2H3 762 aa25.86■■□□□ 1.73
CTCF-202ENST00000401394 TXNDC2Q86VQ3 553 aa25.85■■□□□ 1.73
CTCF-202ENST00000401394 PIK3R4Q99570 1358 aa25.85■■□□□ 1.73
CTCF-202ENST00000401394 CCDC173Q0VFZ6 552 aa25.85■■□□□ 1.73
CTCF-202ENST00000401394 RABEP1Q15276 862 aa25.85■■□□□ 1.73
CTCF-202ENST00000401394 SYCE3A1L190 88 aa25.84■■□□□ 1.73
CTCF-202ENST00000401394 YEATS2Q9ULM3 1422 aa25.84■■□□□ 1.73
CTCF-202ENST00000401394 SULT6B1Q6IMI4 303 aa25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms