RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 TRHP20396 242 aaPredicted RBP17.93■□□□□ 0.46
SNCA-204ENST00000394989 NFE2L2Q16236 605 aa17.93■□□□□ 0.46
SNCA-204ENST00000394989 SSH2Q76I76 1423 aa17.93■□□□□ 0.46
SNCA-204ENST00000394989 DIP2AQ14689 1571 aa17.93■□□□□ 0.46
SNCA-204ENST00000394989 SMC4Q9NTJ3 1288 aa17.93■□□□□ 0.46
SNCA-204ENST00000394989 XRN1Q8IZH2 1706 aaKnown RBP17.92■□□□□ 0.46
SNCA-204ENST00000394989 RGS3P49796 1198 aa17.92■□□□□ 0.46
SNCA-204ENST00000394989 DLG5Q8TDM6 1919 aa17.92■□□□□ 0.46
SNCA-204ENST00000394989 RGPD8O14715 1765 aaPredicted RBP17.92■□□□□ 0.46
SNCA-204ENST00000394989 C8orf34Q49A92 452 aa17.92■□□□□ 0.46
SNCA-204ENST00000394989 ZKSCAN2Q63HK3 967 aa17.92■□□□□ 0.46
SNCA-204ENST00000394989 THUMPD2Q9BTF0 503 aaKnown RBP17.91■□□□□ 0.46
SNCA-204ENST00000394989 PEAK1Q9H792 1746 aa17.91■□□□□ 0.46
SNCA-204ENST00000394989 TRIM27P14373 513 aa17.91■□□□□ 0.46
SNCA-204ENST00000394989 MVPQ14764 893 aaKnown RBP17.91■□□□□ 0.46
SNCA-204ENST00000394989 AAMPQ13685 434 aa17.9■□□□□ 0.46
SNCA-204ENST00000394989 DZIP1LQ8IYY4 767 aaKnown RBP17.89■□□□□ 0.46
SNCA-204ENST00000394989 NEFMP07197 916 aa17.89■□□□□ 0.45
SNCA-204ENST00000394989 CEP170BQ9Y4F5 1589 aaPredicted RBP17.89■□□□□ 0.45
SNCA-204ENST00000394989 FAM161AQ3B820 660 aa17.88■□□□□ 0.45
SNCA-204ENST00000394989 PMFBP1Q8TBY8 1022 aa17.88■□□□□ 0.45
SNCA-204ENST00000394989 USP31Q70CQ4 1352 aa17.88■□□□□ 0.45
SNCA-204ENST00000394989 EIF4A2Q14240 407 aaKnown RBP17.87■□□□□ 0.45
SNCA-204ENST00000394989 NOB1Q9ULX3 412 aaKnown RBP17.87■□□□□ 0.45
SNCA-204ENST00000394989 FTSJ3Q8IY81 847 aaKnown RBP17.87■□□□□ 0.45
SNCA-204ENST00000394989 ATF7IPQ6VMQ6 1270 aa17.87■□□□□ 0.45
SNCA-204ENST00000394989 AEBP1Q8IUX7 1158 aa17.86■□□□□ 0.45
SNCA-204ENST00000394989 RGPD1P0DJD0 1748 aa17.86■□□□□ 0.45
SNCA-204ENST00000394989 ZNF853P0CG23 659 aa17.85■□□□□ 0.45
SNCA-204ENST00000394989 RIMS1Q86UR5 1692 aaKnown RBP17.85■□□□□ 0.45
SNCA-204ENST00000394989 KCNA6P17658 529 aa17.85■□□□□ 0.45
SNCA-204ENST00000394989 FAM83GA6ND36 823 aa17.84■□□□□ 0.45
SNCA-204ENST00000394989 HSP90AB2PQ58FF8 381 aa17.84■□□□□ 0.45
SNCA-204ENST00000394989 ALDH1L2Q3SY69 923 aa17.84■□□□□ 0.45
SNCA-204ENST00000394989 IFT57Q9NWB7 429 aa17.84■□□□□ 0.45
SNCA-204ENST00000394989 PIK3C2AO00443 1686 aa17.83■□□□□ 0.45
SNCA-204ENST00000394989 TSPYL6Q8N831 410 aa17.83■□□□□ 0.44
SNCA-204ENST00000394989 MBIPQ9NS73 344 aa17.83■□□□□ 0.44
SNCA-204ENST00000394989 VIRMAQ69YN4 1812 aaKnown RBP17.83■□□□□ 0.44
SNCA-204ENST00000394989 EIF5BO60841 1220 aaKnown RBP17.83■□□□□ 0.44
SNCA-204ENST00000394989 VAMP4O75379 141 aa17.82■□□□□ 0.44
SNCA-204ENST00000394989 KIF16BQ96L93 1317 aa17.82■□□□□ 0.44
SNCA-204ENST00000394989 SULT6B1Q6IMI4 303 aa17.82■□□□□ 0.44
SNCA-204ENST00000394989 TMEM57Q8N5G2 664 aa17.82■□□□□ 0.44
SNCA-204ENST00000394989 TTC21AQ8NDW8 1320 aa17.82■□□□□ 0.44
SNCA-204ENST00000394989 SOX12O15370 315 aa17.81■□□□□ 0.44
SNCA-204ENST00000394989 GNAI1P63096 354 aa17.81■□□□□ 0.44
SNCA-204ENST00000394989 CALD1Q05682 793 aaKnown RBP17.81■□□□□ 0.44
SNCA-204ENST00000394989 DCTN1Q14203 1278 aa17.81■□□□□ 0.44
SNCA-204ENST00000394989 BRPF1P55201 1214 aaPredicted RBP17.81■□□□□ 0.44
SNCA-204ENST00000394989 FMN2Q9NZ56 1722 aa17.81■□□□□ 0.44
SNCA-204ENST00000394989 ITPRIPQ8IWB1 547 aa17.81■□□□□ 0.44
SNCA-204ENST00000394989 PIK3R4Q99570 1358 aa17.8■□□□□ 0.44
SNCA-204ENST00000394989 CFAP44Q96MT7 982 aa17.8■□□□□ 0.44
SNCA-204ENST00000394989 DDX19BQ9UMR2 479 aa17.8■□□□□ 0.44
SNCA-204ENST00000394989 MAP3K19Q56UN5 1328 aa17.8■□□□□ 0.44
SNCA-204ENST00000394989 NGDNQ8NEJ9 315 aaKnown RBP17.8■□□□□ 0.44
SNCA-204ENST00000394989 ZNF428Q96B54 188 aa17.8■□□□□ 0.44
SNCA-204ENST00000394989 MARF1Q9Y4F3 1742 aaKnown RBP17.79■□□□□ 0.44
SNCA-204ENST00000394989 RWDD1Q9H446 243 aaPredicted RBP17.79■□□□□ 0.44
SNCA-204ENST00000394989 ANKARQ7Z5J8 1434 aa17.79■□□□□ 0.44
SNCA-204ENST00000394989 LMOD3Q0VAK6 560 aa17.79■□□□□ 0.44
SNCA-204ENST00000394989 PDZRN3Q9UPQ7 1066 aa17.79■□□□□ 0.44
SNCA-204ENST00000394989 ZNF142P52746 1687 aaPredicted RBP17.78■□□□□ 0.44
SNCA-204ENST00000394989 CHD2O14647 1828 aaKnown RBP17.78■□□□□ 0.44
SNCA-204ENST00000394989 ELL2O00472 640 aaPredicted RBP17.77■□□□□ 0.44
SNCA-204ENST00000394989 IPO8O15397 1037 aaKnown RBP17.77■□□□□ 0.44
SNCA-204ENST00000394989 MRPL50Q8N5N7 158 aaKnown RBP17.77■□□□□ 0.44
SNCA-204ENST00000394989 C8orf58Q8NAV2 365 aa17.77■□□□□ 0.44
SNCA-204ENST00000394989 ZBTB40Q9NUA8 1239 aa17.77■□□□□ 0.44
SNCA-204ENST00000394989 SBNO1A3KN83 1393 aa17.75■□□□□ 0.43
SNCA-204ENST00000394989 ADAMTSL3P82987 1691 aa17.75■□□□□ 0.43
SNCA-204ENST00000394989 HDAC1Q13547 482 aaPredicted RBP17.75■□□□□ 0.43
SNCA-204ENST00000394989 TWISTNBQ3B726 338 aaPredicted RBP17.75■□□□□ 0.43
SNCA-204ENST00000394989 FLT4P35916 1363 aa17.75■□□□□ 0.43
SNCA-204ENST00000394989 ARHGEF10O15013 1369 aa17.74■□□□□ 0.43
SNCA-204ENST00000394989 SEC24BO95487 1268 aa17.73■□□□□ 0.43
SNCA-204ENST00000394989 MCM10Q7L590 875 aa17.73■□□□□ 0.43
SNCA-204ENST00000394989 ANKLE2Q86XL3 938 aa17.73■□□□□ 0.43
SNCA-204ENST00000394989 USP54Q70EL1 1684 aa17.73■□□□□ 0.43
SNCA-204ENST00000394989 USP19O94966 1318 aa17.73■□□□□ 0.43
SNCA-204ENST00000394989 ARHGAP45Q92619 1136 aa17.72■□□□□ 0.43
SNCA-204ENST00000394989 RBM33Q96EV2 1170 aaKnown RBP17.72■□□□□ 0.43
SNCA-204ENST00000394989 KDRP35968 1356 aa17.72■□□□□ 0.43
SNCA-204ENST00000394989 NLRP6P59044 892 aa17.71■□□□□ 0.43
SNCA-204ENST00000394989 NUTM2GQ5VZR2 741 aa17.71■□□□□ 0.43
SNCA-204ENST00000394989 DDRGK1Q96HY6 314 aa17.71■□□□□ 0.42
SNCA-204ENST00000394989 ZBTB7BO15156 539 aaPredicted RBP17.7■□□□□ 0.42
SNCA-204ENST00000394989 KRT24Q2M2I5 525 aa17.7■□□□□ 0.42
SNCA-204ENST00000394989 BRPF3Q9ULD4 1205 aa17.7■□□□□ 0.42
SNCA-204ENST00000394989 ABCC4O15439 1325 aa17.7■□□□□ 0.42
SNCA-204ENST00000394989 IGSF1Q8N6C5 1336 aa17.7■□□□□ 0.42
SNCA-204ENST00000394989 CHL1O00533 1208 aa17.7■□□□□ 0.42
SNCA-204ENST00000394989 FOXO3O43524 673 aa17.7■□□□□ 0.42
SNCA-204ENST00000394989 EYA1Q99502 592 aa17.7■□□□□ 0.42
SNCA-204ENST00000394989 CRB1P82279 1406 aa17.7■□□□□ 0.42
SNCA-204ENST00000394989 SMC5Q8IY18 1101 aa17.69■□□□□ 0.42
SNCA-204ENST00000394989 AMPHP49418 695 aa17.69■□□□□ 0.42
SNCA-204ENST00000394989 MTHFSDQ2M296 383 aaKnown RBP17.69■□□□□ 0.42
SNCA-204ENST00000394989 SLC4A3P48751 1232 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms