RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 MBIPQ9NS73 344 aa14.22□□□□□ -0.13
TCOF1-203ENST00000394269 MAP3K19Q56UN5 1328 aa14.21□□□□□ -0.13
TCOF1-203ENST00000394269 KRT24Q2M2I5 525 aa14.21□□□□□ -0.13
TCOF1-203ENST00000394269 USP32Q8NFA0 1604 aa14.21□□□□□ -0.13
TCOF1-203ENST00000394269 MS4A1P11836 297 aa14.21□□□□□ -0.13
TCOF1-203ENST00000394269 PSME1Q06323 249 aa14.21□□□□□ -0.13
TCOF1-203ENST00000394269 TECPR2O15040 1411 aa14.21□□□□□ -0.14
TCOF1-203ENST00000394269 MVPQ14764 893 aaKnown RBP14.21□□□□□ -0.14
TCOF1-203ENST00000394269 ATF7IPQ6VMQ6 1270 aa14.21□□□□□ -0.14
TCOF1-203ENST00000394269 TMEM57Q8N5G2 664 aa14.21□□□□□ -0.14
TCOF1-203ENST00000394269 NOP58Q9Y2X3 529 aaKnown RBP14.21□□□□□ -0.14
TCOF1-203ENST00000394269 COL3A1P02461 1466 aaPredicted RBP14.2□□□□□ -0.14
TCOF1-203ENST00000394269 UBR1Q8IWV7 1749 aa14.2□□□□□ -0.14
TCOF1-203ENST00000394269 GNAI1P63096 354 aa14.2□□□□□ -0.14
TCOF1-203ENST00000394269 IPO9Q96P70 1041 aaKnown RBP14.2□□□□□ -0.14
TCOF1-203ENST00000394269 MED14O60244 1454 aa14.19□□□□□ -0.14
TCOF1-203ENST00000394269 C8orf58Q8NAV2 365 aa14.19□□□□□ -0.14
TCOF1-203ENST00000394269 IPO8O15397 1037 aaKnown RBP14.19□□□□□ -0.14
TCOF1-203ENST00000394269 TWISTNBQ3B726 338 aaPredicted RBP14.19□□□□□ -0.14
TCOF1-203ENST00000394269 USHBP1Q8N6Y0 703 aa14.19□□□□□ -0.14
TCOF1-203ENST00000394269 SLC4A3P48751 1232 aa14.18□□□□□ -0.14
TCOF1-203ENST00000394269 CALD1Q05682 793 aaKnown RBP14.18□□□□□ -0.14
TCOF1-203ENST00000394269 C1orf115Q9H7X2 142 aa14.18□□□□□ -0.14
TCOF1-203ENST00000394269 USP6P35125 1406 aa14.18□□□□□ -0.14
TCOF1-203ENST00000394269 RTF1Q92541 710 aaKnown RBP14.18□□□□□ -0.14
TCOF1-203ENST00000394269 RWDD1Q9H446 243 aaPredicted RBP14.18□□□□□ -0.14
TCOF1-203ENST00000394269 PHF8Q9UPP1 1060 aa14.18□□□□□ -0.14
TCOF1-203ENST00000394269 LMOD3Q0VAK6 560 aa14.17□□□□□ -0.14
TCOF1-203ENST00000394269 VAMP4O75379 141 aa14.16□□□□□ -0.14
TCOF1-203ENST00000394269 IL16Q14005 1332 aa14.16□□□□□ -0.14
TCOF1-203ENST00000394269 NECTIN2Q92692 538 aa14.16□□□□□ -0.14
TCOF1-203ENST00000394269 AATKQ6ZMQ8 1374 aa14.16□□□□□ -0.14
TCOF1-203ENST00000394269 SETD1AO15047 1707 aaKnown RBP14.16□□□□□ -0.14
TCOF1-203ENST00000394269 FAM161AQ3B820 660 aa14.16□□□□□ -0.14
TCOF1-203ENST00000394269 ORAI2Q96SN7 254 aa14.16□□□□□ -0.14
TCOF1-203ENST00000394269 EYA1Q99502 592 aa14.15□□□□□ -0.14
TCOF1-203ENST00000394269 PDZRN3Q9UPQ7 1066 aa14.15□□□□□ -0.14
TCOF1-203ENST00000394269 MAP2P11137 1827 aaKnown RBP14.15□□□□□ -0.14
TCOF1-203ENST00000394269 LRRC7Q96NW7 1537 aa14.15□□□□□ -0.14
TCOF1-203ENST00000394269 CT47B1P0C2W7 299 aaPredicted RBP14.15□□□□□ -0.14
TCOF1-203ENST00000394269 PROSER2Q86WR7 435 aaPredicted RBP14.15□□□□□ -0.14
TCOF1-203ENST00000394269 CFAP44Q96MT7 982 aa14.15□□□□□ -0.14
TCOF1-203ENST00000394269 DAXXQ9UER7 740 aaPredicted RBP14.15□□□□□ -0.14
TCOF1-203ENST00000394269 IFT57Q9NWB7 429 aa14.15□□□□□ -0.14
TCOF1-203ENST00000394269 DDX19BQ9UMR2 479 aa14.15□□□□□ -0.14
TCOF1-203ENST00000394269 C3P01024 1663 aa14.15□□□□□ -0.14
TCOF1-203ENST00000394269 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.15□□□□□ -0.14
TCOF1-203ENST00000394269 CDC42BPGQ6DT37 1551 aa14.14□□□□□ -0.15
TCOF1-203ENST00000394269 MTHFSDQ2M296 383 aaKnown RBP14.14□□□□□ -0.15
TCOF1-203ENST00000394269 KIF16BQ96L93 1317 aa14.14□□□□□ -0.15
TCOF1-203ENST00000394269 TTC21AQ8NDW8 1320 aa14.12□□□□□ -0.15
TCOF1-203ENST00000394269 NCBP3Q53F19 620 aaKnown RBP14.12□□□□□ -0.15
TCOF1-203ENST00000394269 FER1L4A9Z1Z3 1794 aa14.12□□□□□ -0.15
TCOF1-203ENST00000394269 C8orf34Q49A92 452 aa14.11□□□□□ -0.15
TCOF1-203ENST00000394269 TSPYL4Q9UJ04 414 aa14.11□□□□□ -0.15
TCOF1-203ENST00000394269 CDK12Q9NYV4 1490 aaPredicted RBP14.11□□□□□ -0.15
TCOF1-203ENST00000394269 KIF20BQ96Q89 1820 aa14.1□□□□□ -0.15
TCOF1-203ENST00000394269 MRPL50Q8N5N7 158 aaKnown RBP14.1□□□□□ -0.15
TCOF1-203ENST00000394269 ARHGAP23Q9P227 1491 aa14.1□□□□□ -0.15
TCOF1-203ENST00000394269 HOXC9P31274 260 aa14.1□□□□□ -0.15
TCOF1-203ENST00000394269 ALDH1L2Q3SY69 923 aa14.1□□□□□ -0.15
TCOF1-203ENST00000394269 SLC4A10Q6U841 1118 aa14.1□□□□□ -0.15
TCOF1-203ENST00000394269 DDX17Q92841 729 aaKnown RBP14.1□□□□□ -0.15
TCOF1-203ENST00000394269 APBB1O00213 710 aa14.09□□□□□ -0.15
TCOF1-203ENST00000394269 LNPKQ9C0E8 428 aa14.09□□□□□ -0.15
TCOF1-203ENST00000394269 SLIT1O75093 1534 aa14.09□□□□□ -0.15
TCOF1-203ENST00000394269 SEC24BO95487 1268 aa14.09□□□□□ -0.15
TCOF1-203ENST00000394269 FLT4P35916 1363 aa14.08□□□□□ -0.16
TCOF1-203ENST00000394269 SLC4A2P04920 1241 aa14.08□□□□□ -0.16
TCOF1-203ENST00000394269 ZNF853P0CG23 659 aa14.08□□□□□ -0.16
TCOF1-203ENST00000394269 OVOS2A0A0J9YW53 1432 aa14.08□□□□□ -0.16
TCOF1-203ENST00000394269 OVOS2Q6IE36 1432 aa14.08□□□□□ -0.16
TCOF1-203ENST00000394269 LRRC59Q96AG4 307 aaKnown RBP14.08□□□□□ -0.16
TCOF1-203ENST00000394269 ZBTB40Q9NUA8 1239 aa14.07□□□□□ -0.16
TCOF1-203ENST00000394269 ADGRB2O60241 1585 aa14.07□□□□□ -0.16
TCOF1-203ENST00000394269 ZC3H6P61129 1189 aaKnown RBP14.06□□□□□ -0.16
TCOF1-203ENST00000394269 RIMS1Q86UR5 1692 aaKnown RBP14.06□□□□□ -0.16
TCOF1-203ENST00000394269 ANKRD45Q5TZF3 282 aa14.06□□□□□ -0.16
TCOF1-203ENST00000394269 PTCH1Q13635 1447 aa14.06□□□□□ -0.16
TCOF1-203ENST00000394269 PIP4K2BP78356 416 aa14.06□□□□□ -0.16
TCOF1-203ENST00000394269 SRCAPQ6ZRS2 3230 aa14.05□□□□□ -0.16
TCOF1-203ENST00000394269 SBNO1A3KN83 1393 aa14.05□□□□□ -0.16
TCOF1-203ENST00000394269 CHL1O00533 1208 aa14.05□□□□□ -0.16
TCOF1-203ENST00000394269 DIP2AQ14689 1571 aa14.05□□□□□ -0.16
TCOF1-203ENST00000394269 CEP170BQ9Y4F5 1589 aaPredicted RBP14.05□□□□□ -0.16
TCOF1-203ENST00000394269 F6X3S4 739 aa14.05□□□□□ -0.16
TCOF1-203ENST00000394269 GAS2L2Q8NHY3 880 aa14.04□□□□□ -0.16
TCOF1-203ENST00000394269 ANKRD26Q9UPS8 1709 aa14.04□□□□□ -0.16
TCOF1-203ENST00000394269 USP31Q70CQ4 1352 aa14.04□□□□□ -0.16
TCOF1-203ENST00000394269 AAMPQ13685 434 aa14.04□□□□□ -0.16
TCOF1-203ENST00000394269 PRKCSHP14314 528 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-203ENST00000394269 NBPF6Q5VWK0 638 aa14.03□□□□□ -0.16
TCOF1-203ENST00000394269 NBPF4Q96M43 638 aa14.03□□□□□ -0.16
TCOF1-203ENST00000394269 GNAT3A8MTJ3 354 aa14.03□□□□□ -0.16
TCOF1-203ENST00000394269 ZBTB7BO15156 539 aaPredicted RBP14.03□□□□□ -0.16
TCOF1-203ENST00000394269 ZNF428Q96B54 188 aa14.03□□□□□ -0.16
TCOF1-203ENST00000394269 EIF2S2P20042 333 aaKnown RBP14.03□□□□□ -0.16
TCOF1-203ENST00000394269 API5Q9BZZ5 524 aaKnown RBP14.03□□□□□ -0.16
TCOF1-203ENST00000394269 SETD1BQ9UPS6 1966 aaKnown RBP14.03□□□□□ -0.16
TCOF1-203ENST00000394269 ATF3P18847 181 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms