RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 CHMP5Q9NZZ3 219 aa22.23■■□□□ 1.15
SQSTM1-202ENST00000389805 ANKRD26Q9UPS8 1709 aa22.23■■□□□ 1.15
SQSTM1-202ENST00000389805 SETD1AO15047 1707 aaKnown RBP22.22■■□□□ 1.15
SQSTM1-202ENST00000389805 ITPRIPQ8IWB1 547 aa22.22■■□□□ 1.15
SQSTM1-202ENST00000389805 DLC1Q96QB1 1528 aa22.22■■□□□ 1.15
SQSTM1-202ENST00000389805 NRXN3Q9Y4C0 1643 aa22.21■■□□□ 1.15
SQSTM1-202ENST00000389805 CEBPAP49715 358 aaPredicted RBP22.2■■□□□ 1.15
SQSTM1-202ENST00000389805 CCDC61Q9Y6R9 512 aa22.2■■□□□ 1.15
SQSTM1-202ENST00000389805 TRIM44Q96DX7 344 aaPredicted RBP22.2■■□□□ 1.14
SQSTM1-202ENST00000389805 C22orf23Q9BZE7 217 aa22.2■■□□□ 1.14
SQSTM1-202ENST00000389805 ATP7BP35670 1465 aa22.2■■□□□ 1.14
SQSTM1-202ENST00000389805 ATF7IPQ6VMQ6 1270 aa22.2■■□□□ 1.14
SQSTM1-202ENST00000389805 RWDD1Q9H446 243 aaPredicted RBP22.2■■□□□ 1.14
SQSTM1-202ENST00000389805 CPSF1Q10570 1443 aaKnown RBP22.19■■□□□ 1.14
SQSTM1-202ENST00000389805 KIF20BQ96Q89 1820 aa22.19■■□□□ 1.14
SQSTM1-202ENST00000389805 CT47B1P0C2W7 299 aaPredicted RBP22.19■■□□□ 1.14
SQSTM1-202ENST00000389805 PRR36Q9H6K5 1346 aa22.19■■□□□ 1.14
SQSTM1-202ENST00000389805 LRRC7Q96NW7 1537 aa22.18■■□□□ 1.14
SQSTM1-202ENST00000389805 IL16Q14005 1332 aa22.18■■□□□ 1.14
SQSTM1-202ENST00000389805 ELL2O00472 640 aaPredicted RBP22.18■■□□□ 1.14
SQSTM1-202ENST00000389805 IL13P35225 146 aa22.18■■□□□ 1.14
SQSTM1-202ENST00000389805 TMEM57Q8N5G2 664 aa22.18■■□□□ 1.14
SQSTM1-202ENST00000389805 MAP2P11137 1827 aaKnown RBP22.18■■□□□ 1.14
SQSTM1-202ENST00000389805 TNRQ92752 1358 aa22.17■■□□□ 1.14
SQSTM1-202ENST00000389805 COG3Q96JB2 828 aa22.17■■□□□ 1.14
SQSTM1-202ENST00000389805 LTKP29376 864 aa22.16■■□□□ 1.14
SQSTM1-202ENST00000389805 AAMPQ13685 434 aa22.16■■□□□ 1.14
SQSTM1-202ENST00000389805 GAS2L3Q86XJ1 694 aa22.16■■□□□ 1.14
SQSTM1-202ENST00000389805 EDC4Q6P2E9 1401 aaKnown RBP22.16■■□□□ 1.14
SQSTM1-202ENST00000389805 CPS1P31327 1500 aa22.15■■□□□ 1.14
SQSTM1-202ENST00000389805 ROBO2Q9HCK4 1378 aa22.15■■□□□ 1.14
SQSTM1-202ENST00000389805 NFE2L2Q16236 605 aa22.15■■□□□ 1.14
SQSTM1-202ENST00000389805 FAM135BQ49AJ0 1406 aa22.15■■□□□ 1.14
SQSTM1-202ENST00000389805 TSPYL6Q8N831 410 aa22.15■■□□□ 1.14
SQSTM1-202ENST00000389805 SLC26A8Q96RN1 970 aa22.15■■□□□ 1.14
SQSTM1-202ENST00000389805 HDGFP51858 240 aaKnown RBP22.14■■□□□ 1.13
SQSTM1-202ENST00000389805 FAM83GA6ND36 823 aa22.14■■□□□ 1.13
SQSTM1-202ENST00000389805 KIF13AQ9H1H9 1805 aa22.13■■□□□ 1.13
SQSTM1-202ENST00000389805 TMEM2Q9UHN6 1383 aa22.13■■□□□ 1.13
SQSTM1-202ENST00000389805 DCTN1Q14203 1278 aa22.12■■□□□ 1.13
SQSTM1-202ENST00000389805 HSCBQ8IWL3 235 aa22.12■■□□□ 1.13
SQSTM1-202ENST00000389805 SOX12O15370 315 aa22.12■■□□□ 1.13
SQSTM1-202ENST00000389805 DDX19BQ9UMR2 479 aa22.11■■□□□ 1.13
SQSTM1-202ENST00000389805 FOXD4L1Q9NU39 408 aa22.11■■□□□ 1.13
SQSTM1-202ENST00000389805 DDX11L8A8MPP1 907 aa22.1■■□□□ 1.13
SQSTM1-202ENST00000389805 VAMP4O75379 141 aa22.09■■□□□ 1.13
SQSTM1-202ENST00000389805 AEBP1Q8IUX7 1158 aa22.08■■□□□ 1.13
SQSTM1-202ENST00000389805 MBIPQ9NS73 344 aa22.08■■□□□ 1.13
SQSTM1-202ENST00000389805 ZBTB40Q9NUA8 1239 aa22.08■■□□□ 1.13
SQSTM1-202ENST00000389805 ZNF692Q9BU19 519 aaPredicted RBP22.08■■□□□ 1.12
SQSTM1-202ENST00000389805 IPO8O15397 1037 aaKnown RBP22.07■■□□□ 1.12
SQSTM1-202ENST00000389805 TNPO1Q92973 898 aaKnown RBP22.07■■□□□ 1.12
SQSTM1-202ENST00000389805 ACEP12821 1306 aa22.07■■□□□ 1.12
SQSTM1-202ENST00000389805 KIF16BQ96L93 1317 aa22.07■■□□□ 1.12
SQSTM1-202ENST00000389805 SIRT1Q96EB6 747 aa22.07■■□□□ 1.12
SQSTM1-202ENST00000389805 ADAMTS13Q76LX8 1427 aa22.06■■□□□ 1.12
SQSTM1-202ENST00000389805 KIAA1211Q6ZU35 1233 aa22.06■■□□□ 1.12
SQSTM1-202ENST00000389805 CDC42BPGQ6DT37 1551 aa22.06■■□□□ 1.12
SQSTM1-202ENST00000389805 ALDH1L2Q3SY69 923 aa22.05■■□□□ 1.12
SQSTM1-202ENST00000389805 TECPR2O15040 1411 aa22.05■■□□□ 1.12
SQSTM1-202ENST00000389805 AATKQ6ZMQ8 1374 aa22.05■■□□□ 1.12
SQSTM1-202ENST00000389805 RBM10P98175 930 aaKnown RBP22.05■■□□□ 1.12
SQSTM1-202ENST00000389805 HDAC1Q13547 482 aaPredicted RBP22.05■■□□□ 1.12
SQSTM1-202ENST00000389805 C8orf58Q8NAV2 365 aa22.05■■□□□ 1.12
SQSTM1-202ENST00000389805 TTC21BQ7Z4L5 1316 aa22.04■■□□□ 1.12
SQSTM1-202ENST00000389805 C1orf115Q9H7X2 142 aa22.04■■□□□ 1.12
SQSTM1-202ENST00000389805 SULT6B1Q6IMI4 303 aa22.03■■□□□ 1.12
SQSTM1-202ENST00000389805 CDK12Q9NYV4 1490 aaPredicted RBP22.03■■□□□ 1.12
SQSTM1-202ENST00000389805 GNAI1P63096 354 aa22.03■■□□□ 1.12
SQSTM1-202ENST00000389805 MRPL50Q8N5N7 158 aaKnown RBP22.03■■□□□ 1.12
SQSTM1-202ENST00000389805 EIF4A2Q14240 407 aaKnown RBP22.02■■□□□ 1.12
SQSTM1-202ENST00000389805 ZNF853P0CG23 659 aa22.02■■□□□ 1.12
SQSTM1-202ENST00000389805 HSP90AB2PQ58FF8 381 aa22.02■■□□□ 1.12
SQSTM1-202ENST00000389805 IFT57Q9NWB7 429 aa22.02■■□□□ 1.12
SQSTM1-202ENST00000389805 HSP90AB1P08238 724 aaKnown RBP22.01■■□□□ 1.11
SQSTM1-202ENST00000389805 TWISTNBQ3B726 338 aaPredicted RBP22.01■■□□□ 1.11
SQSTM1-202ENST00000389805 UBR1Q8IWV7 1749 aa22.01■■□□□ 1.11
SQSTM1-202ENST00000389805 TPM2P07951 284 aa22■■□□□ 1.11
SQSTM1-202ENST00000389805 KRT24Q2M2I5 525 aa22■■□□□ 1.11
SQSTM1-202ENST00000389805 SMC5Q8IY18 1101 aa22■■□□□ 1.11
SQSTM1-202ENST00000389805 CFAP44Q96MT7 982 aa21.99■■□□□ 1.11
SQSTM1-202ENST00000389805 LNPKQ9C0E8 428 aa21.99■■□□□ 1.11
SQSTM1-202ENST00000389805 PDCL3Q9H2J4 239 aa21.99■■□□□ 1.11
SQSTM1-202ENST00000389805 AMOTL2Q9Y2J4 779 aa21.99■■□□□ 1.11
SQSTM1-202ENST00000389805 PTPRUQ92729 1446 aa21.99■■□□□ 1.11
SQSTM1-202ENST00000389805 CALD1Q05682 793 aaKnown RBP21.99■■□□□ 1.11
SQSTM1-202ENST00000389805 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.98■■□□□ 1.11
SQSTM1-202ENST00000389805 ZBTB7BO15156 539 aaPredicted RBP21.98■■□□□ 1.11
SQSTM1-202ENST00000389805 ARID3AQ99856 593 aa21.98■■□□□ 1.11
SQSTM1-202ENST00000389805 MCM10Q7L590 875 aa21.97■■□□□ 1.11
SQSTM1-202ENST00000389805 GBP4Q96PP9 640 aa21.97■■□□□ 1.11
SQSTM1-202ENST00000389805 MON2Q7Z3U7 1717 aa21.97■■□□□ 1.11
SQSTM1-202ENST00000389805 ISY1Q9ULR0 285 aaKnown RBP21.96■■□□□ 1.11
SQSTM1-202ENST00000389805 EID1Q9Y6B2 187 aa21.96■■□□□ 1.11
SQSTM1-202ENST00000389805 PLEKHG3A1L390 1219 aa21.96■■□□□ 1.11
SQSTM1-202ENST00000389805 PLEKHG1Q9ULL1 1385 aa21.95■■□□□ 1.1
SQSTM1-202ENST00000389805 KNDC1Q76NI1 1749 aa21.95■■□□□ 1.1
SQSTM1-202ENST00000389805 C3P01024 1663 aa21.95■■□□□ 1.1
SQSTM1-202ENST00000389805 BRPF1P55201 1214 aaPredicted RBP21.95■■□□□ 1.1
SQSTM1-202ENST00000389805 ZNF428Q96B54 188 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms