RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 RBM42Q9BTD8 480 aaKnown RBP17.43■□□□□ 0.38
SHROOM1-203ENST00000378679 ZRSR1Q15695 479 aaKnown RBP17.42■□□□□ 0.38
SHROOM1-203ENST00000378679 AEBP1Q8IUX7 1158 aa17.42■□□□□ 0.38
SHROOM1-203ENST00000378679 TTC21AQ8NDW8 1320 aa17.42■□□□□ 0.38
SHROOM1-203ENST00000378679 LTKP29376 864 aa17.42■□□□□ 0.38
SHROOM1-203ENST00000378679 SRCIN1Q9C0H9 1055 aa17.42■□□□□ 0.38
SHROOM1-203ENST00000378679 TAF7Q15545 349 aaPredicted RBP17.42■□□□□ 0.38
SHROOM1-203ENST00000378679 GCC1Q96CN9 775 aa17.41■□□□□ 0.38
SHROOM1-203ENST00000378679 ANO2Q9NQ90 1003 aa17.41■□□□□ 0.38
SHROOM1-203ENST00000378679 ZFYVE16Q7Z3T8 1539 aa17.41■□□□□ 0.38
SHROOM1-203ENST00000378679 CDC42BPAQ5VT25 1732 aa17.41■□□□□ 0.38
SHROOM1-203ENST00000378679 MPRIPQ6WCQ1 1025 aa17.41■□□□□ 0.38
SHROOM1-203ENST00000378679 FRAT2O75474 233 aaPredicted RBP17.41■□□□□ 0.38
SHROOM1-203ENST00000378679 MEX3CQ5U5Q3 659 aaKnown RBP17.41■□□□□ 0.38
SHROOM1-203ENST00000378679 MYL6BP14649 208 aa17.4■□□□□ 0.38
SHROOM1-203ENST00000378679 ALDH1L2Q3SY69 923 aa17.4■□□□□ 0.38
SHROOM1-203ENST00000378679 C22orf23Q9BZE7 217 aa17.4■□□□□ 0.38
SHROOM1-203ENST00000378679 PIK3C2GO75747 1445 aa17.4■□□□□ 0.38
SHROOM1-203ENST00000378679 PIP4K2BP78356 416 aa17.4■□□□□ 0.38
SHROOM1-203ENST00000378679 UGGT1Q9NYU2 1555 aa17.4■□□□□ 0.38
SHROOM1-203ENST00000378679 TRIM27P14373 513 aa17.39■□□□□ 0.38
SHROOM1-203ENST00000378679 EIF4A2Q14240 407 aaKnown RBP17.39■□□□□ 0.38
SHROOM1-203ENST00000378679 VSIG10Q8N0Z9 540 aa17.39■□□□□ 0.37
SHROOM1-203ENST00000378679 CLASRPQ8N2M8 674 aaKnown RBP17.39■□□□□ 0.37
SHROOM1-203ENST00000378679 BACH2Q9BYV9 841 aa17.39■□□□□ 0.37
SHROOM1-203ENST00000378679 PLEKHH1Q9ULM0 1364 aa17.39■□□□□ 0.37
SHROOM1-203ENST00000378679 TMEM2Q9UHN6 1383 aa17.38■□□□□ 0.37
SHROOM1-203ENST00000378679 AMOTQ4VCS5 1084 aa17.38■□□□□ 0.37
SHROOM1-203ENST00000378679 MBIPQ9NS73 344 aa17.38■□□□□ 0.37
SHROOM1-203ENST00000378679 NPC1L1Q9UHC9 1359 aa17.38■□□□□ 0.37
SHROOM1-203ENST00000378679 PLCB2Q00722 1185 aa17.38■□□□□ 0.37
SHROOM1-203ENST00000378679 NFKBIBQ15653 356 aa17.38■□□□□ 0.37
SHROOM1-203ENST00000378679 INTS3Q68E01 1043 aaKnown RBP17.38■□□□□ 0.37
SHROOM1-203ENST00000378679 CHRNA2Q15822 529 aa17.37■□□□□ 0.37
SHROOM1-203ENST00000378679 RUFY2Q8WXA3 655 aa17.37■□□□□ 0.37
SHROOM1-203ENST00000378679 PTPRTO14522 1441 aa17.37■□□□□ 0.37
SHROOM1-203ENST00000378679 PHACTR3Q96KR7 559 aa17.36■□□□□ 0.37
SHROOM1-203ENST00000378679 NEUROD6Q96NK8 337 aa17.36■□□□□ 0.37
SHROOM1-203ENST00000378679 F6X3S4 739 aa17.36■□□□□ 0.37
SHROOM1-203ENST00000378679 CDC45O75419 566 aa17.36■□□□□ 0.37
SHROOM1-203ENST00000378679 C19orf44Q9H6X5 657 aa17.36■□□□□ 0.37
SHROOM1-203ENST00000378679 IL16Q14005 1332 aa17.35■□□□□ 0.37
SHROOM1-203ENST00000378679 PTCD1O75127 700 aaKnown RBP17.35■□□□□ 0.37
SHROOM1-203ENST00000378679 ERC2O15083 957 aa17.35■□□□□ 0.37
SHROOM1-203ENST00000378679 PTMAP06454 111 aaKnown RBP17.35■□□□□ 0.37
SHROOM1-203ENST00000378679 CCDC27Q2M243 656 aa17.35■□□□□ 0.37
SHROOM1-203ENST00000378679 FOXD4L5Q5VV16 416 aaPredicted RBP17.34■□□□□ 0.37
SHROOM1-203ENST00000378679 ANKRD24Q8TF21 1146 aa17.34■□□□□ 0.37
SHROOM1-203ENST00000378679 FOXD4L4Q8WXT5 416 aaPredicted RBP17.34■□□□□ 0.37
SHROOM1-203ENST00000378679 SPINK5Q9NQ38 1064 aaPredicted RBP17.34■□□□□ 0.37
SHROOM1-203ENST00000378679 CHD1LQ86WJ1 897 aa17.34■□□□□ 0.37
SHROOM1-203ENST00000378679 KDM5DQ9BY66 1539 aa17.34■□□□□ 0.37
SHROOM1-203ENST00000378679 HSP90B1P14625 803 aaKnown RBP17.34■□□□□ 0.37
SHROOM1-203ENST00000378679 ADCY10Q96PN6 1610 aa17.34■□□□□ 0.37
SHROOM1-203ENST00000378679 FAM177BA6PVY3 158 aa17.33■□□□□ 0.37
SHROOM1-203ENST00000378679 RPAP2Q8IXW5 612 aaPredicted RBP17.33■□□□□ 0.37
SHROOM1-203ENST00000378679 MAP3K19Q56UN5 1328 aa17.33■□□□□ 0.36
SHROOM1-203ENST00000378679 CFAP74Q9C0B2 1584 aa17.32■□□□□ 0.36
SHROOM1-203ENST00000378679 TOMM22Q9NS69 142 aa17.32■□□□□ 0.36
SHROOM1-203ENST00000378679 SRGAP3O43295 1099 aa17.32■□□□□ 0.36
SHROOM1-203ENST00000378679 SBNO2Q9Y2G9 1366 aa17.32■□□□□ 0.36
SHROOM1-203ENST00000378679 PRDM15P57071 1507 aaPredicted RBP17.32■□□□□ 0.36
SHROOM1-203ENST00000378679 TMX4Q9H1E5 349 aaPredicted RBP17.32■□□□□ 0.36
SHROOM1-203ENST00000378679 TRPM2O94759 1503 aa17.31■□□□□ 0.36
SHROOM1-203ENST00000378679 ZKSCAN1P17029 563 aaPredicted RBP17.31■□□□□ 0.36
SHROOM1-203ENST00000378679 MAGI2Q86UL8 1455 aa17.31■□□□□ 0.36
SHROOM1-203ENST00000378679 DNTTIP2Q5QJE6 756 aaKnown RBP17.31■□□□□ 0.36
SHROOM1-203ENST00000378679 CLASP1Q7Z460 1538 aa17.3■□□□□ 0.36
SHROOM1-203ENST00000378679 CABLES1Q8TDN4 633 aa17.3■□□□□ 0.36
SHROOM1-203ENST00000378679 EXOC6BQ9Y2D4 811 aa17.3■□□□□ 0.36
SHROOM1-203ENST00000378679 NPHP3Q7Z494 1330 aa17.3■□□□□ 0.36
SHROOM1-203ENST00000378679 ADAMTS2O95450 1211 aa17.3■□□□□ 0.36
SHROOM1-203ENST00000378679 LRRCC1Q9C099 1032 aa17.3■□□□□ 0.36
SHROOM1-203ENST00000378679 MSH6P52701 1360 aa17.3■□□□□ 0.36
SHROOM1-203ENST00000378679 EYA1Q99502 592 aa17.3■□□□□ 0.36
SHROOM1-203ENST00000378679 ARAP3Q8WWN8 1544 aa17.29■□□□□ 0.36
SHROOM1-203ENST00000378679 GCP02774 474 aa17.29■□□□□ 0.36
SHROOM1-203ENST00000378679 GNL2Q13823 731 aaKnown RBP17.29■□□□□ 0.36
SHROOM1-203ENST00000378679 ORAI2Q96SN7 254 aa17.29■□□□□ 0.36
SHROOM1-203ENST00000378679 SIL1Q9H173 461 aa17.29■□□□□ 0.36
SHROOM1-203ENST00000378679 ISY1Q9ULR0 285 aaKnown RBP17.29■□□□□ 0.36
SHROOM1-203ENST00000378679 L1TD1Q5T7N2 865 aaKnown RBP17.29■□□□□ 0.36
SHROOM1-203ENST00000378679 FLT4P35916 1363 aa17.29■□□□□ 0.36
SHROOM1-203ENST00000378679 C8orf58Q8NAV2 365 aa17.29■□□□□ 0.36
SHROOM1-203ENST00000378679 IL1RAPL2Q9NP60 686 aa17.29■□□□□ 0.36
SHROOM1-203ENST00000378679 LRRC59Q96AG4 307 aaKnown RBP17.28■□□□□ 0.36
SHROOM1-203ENST00000378679 DMRT2Q9Y5R5 561 aa17.28■□□□□ 0.36
SHROOM1-203ENST00000378679 FLIIQ13045 1269 aa17.28■□□□□ 0.36
SHROOM1-203ENST00000378679 LRRFIP1Q32MZ4 808 aaKnown RBP17.28■□□□□ 0.36
SHROOM1-203ENST00000378679 MTHFSDQ2M296 383 aaKnown RBP17.28■□□□□ 0.36
SHROOM1-203ENST00000378679 KIF6Q6ZMV9 814 aa17.28■□□□□ 0.36
SHROOM1-203ENST00000378679 TSPOAP1O95153 1857 aa17.28■□□□□ 0.36
SHROOM1-203ENST00000378679 METP08581 1390 aa17.27■□□□□ 0.36
SHROOM1-203ENST00000378679 RSPH6AQ9H0K4 717 aa17.27■□□□□ 0.36
SHROOM1-203ENST00000378679 HECW2Q9P2P5 1572 aa17.27■□□□□ 0.36
SHROOM1-203ENST00000378679 FOXD4L6Q3SYB3 417 aaPredicted RBP17.27■□□□□ 0.35
SHROOM1-203ENST00000378679 FOXD4L3Q6VB84 417 aaPredicted RBP17.27■□□□□ 0.35
SHROOM1-203ENST00000378679 ANXA1P04083 346 aa17.26■□□□□ 0.35
SHROOM1-203ENST00000378679 TNNQ9UQP3 1299 aa17.26■□□□□ 0.35
SHROOM1-203ENST00000378679 EDC4Q6P2E9 1401 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms