RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 PTPRTO14522 1441 aa17.81■□□□□ 0.44
TCOF1-202ENST00000377797 DEKP35659 375 aaKnown RBP17.81■□□□□ 0.44
TCOF1-202ENST00000377797 INTS3Q68E01 1043 aaKnown RBP17.81■□□□□ 0.44
TCOF1-202ENST00000377797 TRPM2O94759 1503 aa17.8■□□□□ 0.44
TCOF1-202ENST00000377797 PLEKHH1Q9ULM0 1364 aa17.8■□□□□ 0.44
TCOF1-202ENST00000377797 TRIM27P14373 513 aa17.8■□□□□ 0.44
TCOF1-202ENST00000377797 SKAP1Q86WV1 359 aa17.79■□□□□ 0.44
TCOF1-202ENST00000377797 AEBP1Q8IUX7 1158 aa17.79■□□□□ 0.44
TCOF1-202ENST00000377797 RBM42Q9BTD8 480 aaKnown RBP17.79■□□□□ 0.44
TCOF1-202ENST00000377797 RUFY2Q8WXA3 655 aa17.79■□□□□ 0.44
TCOF1-202ENST00000377797 IL16Q14005 1332 aa17.79■□□□□ 0.44
TCOF1-202ENST00000377797 ARAP3Q8WWN8 1544 aa17.79■□□□□ 0.44
TCOF1-202ENST00000377797 TMEM2Q9UHN6 1383 aa17.79■□□□□ 0.44
TCOF1-202ENST00000377797 CDC45O75419 566 aa17.78■□□□□ 0.44
TCOF1-202ENST00000377797 AMOTQ4VCS5 1084 aa17.78■□□□□ 0.44
TCOF1-202ENST00000377797 CLASRPQ8N2M8 674 aaKnown RBP17.78■□□□□ 0.44
TCOF1-202ENST00000377797 CLASP1Q7Z460 1538 aa17.78■□□□□ 0.44
TCOF1-202ENST00000377797 EIF4A2Q14240 407 aaKnown RBP17.78■□□□□ 0.44
TCOF1-202ENST00000377797 MPRIPQ6WCQ1 1025 aa17.78■□□□□ 0.44
TCOF1-202ENST00000377797 MBIPQ9NS73 344 aa17.78■□□□□ 0.44
TCOF1-202ENST00000377797 FRAT2O75474 233 aaPredicted RBP17.78■□□□□ 0.44
TCOF1-202ENST00000377797 AEBP2Q6ZN18 517 aaPredicted RBP17.78■□□□□ 0.44
TCOF1-202ENST00000377797 NUTM2BA6NNL0 878 aaPredicted RBP17.78■□□□□ 0.44
TCOF1-202ENST00000377797 NUTM2EB1AL46 878 aaPredicted RBP17.78■□□□□ 0.44
TCOF1-202ENST00000377797 MYL6BP14649 208 aa17.78■□□□□ 0.44
TCOF1-202ENST00000377797 LTKP29376 864 aa17.78■□□□□ 0.44
TCOF1-202ENST00000377797 CCDC27Q2M243 656 aa17.78■□□□□ 0.44
TCOF1-202ENST00000377797 NUTM2AQ8IVF1 878 aaPredicted RBP17.78■□□□□ 0.44
TCOF1-202ENST00000377797 PTMAP06454 111 aaKnown RBP17.77■□□□□ 0.44
TCOF1-202ENST00000377797 PLCB2Q00722 1185 aa17.77■□□□□ 0.44
TCOF1-202ENST00000377797 MEX3CQ5U5Q3 659 aaKnown RBP17.77■□□□□ 0.44
TCOF1-202ENST00000377797 LRRIQ1Q96JM4 1722 aa17.77■□□□□ 0.43
TCOF1-202ENST00000377797 PLXNC1O60486 1568 aa17.77■□□□□ 0.43
TCOF1-202ENST00000377797 ERC2O15083 957 aa17.76■□□□□ 0.43
TCOF1-202ENST00000377797 HECW2Q9P2P5 1572 aa17.76■□□□□ 0.43
TCOF1-202ENST00000377797 SBNO2Q9Y2G9 1366 aa17.76■□□□□ 0.43
TCOF1-202ENST00000377797 MAGI2Q86UL8 1455 aa17.76■□□□□ 0.43
TCOF1-202ENST00000377797 HSP90B1P14625 803 aaKnown RBP17.75■□□□□ 0.43
TCOF1-202ENST00000377797 HSPA2P54652 639 aa17.75■□□□□ 0.43
TCOF1-202ENST00000377797 CHD1LQ86WJ1 897 aa17.75■□□□□ 0.43
TCOF1-202ENST00000377797 PRDM15P57071 1507 aaPredicted RBP17.75■□□□□ 0.43
TCOF1-202ENST00000377797 RPAP2Q8IXW5 612 aaPredicted RBP17.75■□□□□ 0.43
TCOF1-202ENST00000377797 NEUROD6Q96NK8 337 aa17.74■□□□□ 0.43
TCOF1-202ENST00000377797 PHACTR3Q96KR7 559 aa17.74■□□□□ 0.43
TCOF1-202ENST00000377797 TSPOAP1O95153 1857 aa17.73■□□□□ 0.43
TCOF1-202ENST00000377797 F6X3S4 739 aa17.73■□□□□ 0.43
TCOF1-202ENST00000377797 CDC42BPBQ9Y5S2 1711 aa17.73■□□□□ 0.43
TCOF1-202ENST00000377797 KDM5CP41229 1560 aa17.73■□□□□ 0.43
TCOF1-202ENST00000377797 FOXD4L5Q5VV16 416 aaPredicted RBP17.73■□□□□ 0.43
TCOF1-202ENST00000377797 FOXD4L4Q8WXT5 416 aaPredicted RBP17.73■□□□□ 0.43
TCOF1-202ENST00000377797 PIP4K2BP78356 416 aa17.73■□□□□ 0.43
TCOF1-202ENST00000377797 ANKRD24Q8TF21 1146 aa17.73■□□□□ 0.43
TCOF1-202ENST00000377797 CHRNA2Q15822 529 aa17.72■□□□□ 0.43
TCOF1-202ENST00000377797 C19orf44Q9H6X5 657 aa17.72■□□□□ 0.43
TCOF1-202ENST00000377797 ZKSCAN1P17029 563 aaPredicted RBP17.72■□□□□ 0.43
TCOF1-202ENST00000377797 SPINK5Q9NQ38 1064 aaPredicted RBP17.72■□□□□ 0.43
TCOF1-202ENST00000377797 PTMSP20962 102 aa17.72■□□□□ 0.43
TCOF1-202ENST00000377797 MAP3K19Q56UN5 1328 aa17.71■□□□□ 0.43
TCOF1-202ENST00000377797 SRGAP3O43295 1099 aa17.71■□□□□ 0.43
TCOF1-202ENST00000377797 LRRCC1Q9C099 1032 aa17.71■□□□□ 0.43
TCOF1-202ENST00000377797 ZFYVE9O95405 1425 aa17.71■□□□□ 0.43
TCOF1-202ENST00000377797 TMX4Q9H1E5 349 aaPredicted RBP17.71■□□□□ 0.43
TCOF1-202ENST00000377797 TOMM22Q9NS69 142 aa17.7■□□□□ 0.42
TCOF1-202ENST00000377797 GNL2Q13823 731 aaKnown RBP17.7■□□□□ 0.42
TCOF1-202ENST00000377797 LRRFIP1Q32MZ4 808 aaKnown RBP17.7■□□□□ 0.42
TCOF1-202ENST00000377797 MYOM2P54296 1465 aa17.7■□□□□ 0.42
TCOF1-202ENST00000377797 FLT4P35916 1363 aa17.7■□□□□ 0.42
TCOF1-202ENST00000377797 L1TD1Q5T7N2 865 aaKnown RBP17.7■□□□□ 0.42
TCOF1-202ENST00000377797 PTCD1O75127 700 aaKnown RBP17.7■□□□□ 0.42
TCOF1-202ENST00000377797 MSH6P52701 1360 aa17.69■□□□□ 0.42
TCOF1-202ENST00000377797 IQGAP3Q86VI3 1631 aa17.69■□□□□ 0.42
TCOF1-202ENST00000377797 EDC4Q6P2E9 1401 aaKnown RBP17.69■□□□□ 0.42
TCOF1-202ENST00000377797 NPHP3Q7Z494 1330 aa17.69■□□□□ 0.42
TCOF1-202ENST00000377797 EXOC6BQ9Y2D4 811 aa17.68■□□□□ 0.42
TCOF1-202ENST00000377797 FAM177BA6PVY3 158 aa17.68■□□□□ 0.42
TCOF1-202ENST00000377797 KIF6Q6ZMV9 814 aa17.68■□□□□ 0.42
TCOF1-202ENST00000377797 RSPH6AQ9H0K4 717 aa17.68■□□□□ 0.42
TCOF1-202ENST00000377797 ABCC3O15438 1527 aa17.67■□□□□ 0.42
TCOF1-202ENST00000377797 FLIIQ13045 1269 aa17.67■□□□□ 0.42
TCOF1-202ENST00000377797 CNTROBQ8N137 903 aa17.67■□□□□ 0.42
TCOF1-202ENST00000377797 EYA1Q99502 592 aa17.67■□□□□ 0.42
TCOF1-202ENST00000377797 ERVK-7P63135 1459 aa17.67■□□□□ 0.42
TCOF1-202ENST00000377797 C8orf58Q8NAV2 365 aa17.67■□□□□ 0.42
TCOF1-202ENST00000377797 SIL1Q9H173 461 aa17.67■□□□□ 0.42
TCOF1-202ENST00000377797 MSH5O43196 834 aa17.67■□□□□ 0.42
TCOF1-202ENST00000377797 TET3O43151 1660 aa17.67■□□□□ 0.42
TCOF1-202ENST00000377797 IL1RAPL2Q9NP60 686 aa17.66■□□□□ 0.42
TCOF1-202ENST00000377797 METP08581 1390 aa17.66■□□□□ 0.42
TCOF1-202ENST00000377797 MTHFSDQ2M296 383 aaKnown RBP17.66■□□□□ 0.42
TCOF1-202ENST00000377797 ERC1Q8IUD2 1116 aa17.66■□□□□ 0.42
TCOF1-202ENST00000377797 CHMP5Q9NZZ3 219 aa17.66■□□□□ 0.42
TCOF1-202ENST00000377797 GCP02774 474 aa17.66■□□□□ 0.42
TCOF1-202ENST00000377797 SIRT1Q96EB6 747 aa17.66■□□□□ 0.42
TCOF1-202ENST00000377797 ISY1Q9ULR0 285 aaKnown RBP17.66■□□□□ 0.42
TCOF1-202ENST00000377797 IGHDP01880 384 aa17.66■□□□□ 0.42
TCOF1-202ENST00000377797 DMRT2Q9Y5R5 561 aa17.66■□□□□ 0.42
TCOF1-202ENST00000377797 EFCAB6Q5THR3 1501 aa17.66■□□□□ 0.42
TCOF1-202ENST00000377797 RNF20Q5VTR2 975 aa17.65■□□□□ 0.42
TCOF1-202ENST00000377797 LRRC59Q96AG4 307 aaKnown RBP17.65■□□□□ 0.42
TCOF1-202ENST00000377797 PTPRCP08575 1304 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 196.6 ms