RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 TMPOP42166 694 aaKnown RBP11.23□□□□□ -0.61
SNRNP40-202ENST00000373720 POLKQ9UBT6 870 aa11.23□□□□□ -0.61
SNRNP40-202ENST00000373720 USP31Q70CQ4 1352 aa11.23□□□□□ -0.61
SNRNP40-202ENST00000373720 ANKLE2Q86XL3 938 aa11.22□□□□□ -0.61
SNRNP40-202ENST00000373720 TOPAZ1Q8N9V7 1692 aa11.22□□□□□ -0.61
SNRNP40-202ENST00000373720 PMFBP1Q8TBY8 1022 aa11.22□□□□□ -0.61
SNRNP40-202ENST00000373720 ROBO2Q9HCK4 1378 aa11.22□□□□□ -0.61
SNRNP40-202ENST00000373720 SETD1BQ9UPS6 1966 aaKnown RBP11.21□□□□□ -0.61
SNRNP40-202ENST00000373720 KIF16BQ96L93 1317 aa11.21□□□□□ -0.61
SNRNP40-202ENST00000373720 U2SURPO15042 1029 aaKnown RBP11.21□□□□□ -0.61
SNRNP40-202ENST00000373720 LTKP29376 864 aa11.21□□□□□ -0.61
SNRNP40-202ENST00000373720 TNNT2P45379 298 aaPredicted RBP11.21□□□□□ -0.61
SNRNP40-202ENST00000373720 RARSP54136 660 aaKnown RBP11.21□□□□□ -0.61
SNRNP40-202ENST00000373720 AMOTL2Q9Y2J4 779 aa11.21□□□□□ -0.61
SNRNP40-202ENST00000373720 ZNF142P52746 1687 aaPredicted RBP11.2□□□□□ -0.62
SNRNP40-202ENST00000373720 CEP170BQ9Y4F5 1589 aaPredicted RBP11.2□□□□□ -0.62
SNRNP40-202ENST00000373720 USP6P35125 1406 aa11.2□□□□□ -0.62
SNRNP40-202ENST00000373720 PAK3O75914 559 aaPredicted RBP11.2□□□□□ -0.62
SNRNP40-202ENST00000373720 CANXP27824 592 aaKnown RBP11.2□□□□□ -0.62
SNRNP40-202ENST00000373720 GNAI1P63096 354 aa11.2□□□□□ -0.62
SNRNP40-202ENST00000373720 ARHGAP45Q92619 1136 aa11.2□□□□□ -0.62
SNRNP40-202ENST00000373720 CRBNQ96SW2 442 aa11.2□□□□□ -0.62
SNRNP40-202ENST00000373720 CHMP4AQ9BY43 222 aa11.2□□□□□ -0.62
SNRNP40-202ENST00000373720 SSH2Q76I76 1423 aa11.19□□□□□ -0.62
SNRNP40-202ENST00000373720 KDM2BQ8NHM5 1336 aa11.19□□□□□ -0.62
SNRNP40-202ENST00000373720 XRN1Q8IZH2 1706 aaKnown RBP11.19□□□□□ -0.62
SNRNP40-202ENST00000373720 SPDYE4A6NLX3 237 aa11.19□□□□□ -0.62
SNRNP40-202ENST00000373720 NFE2L2Q16236 605 aa11.19□□□□□ -0.62
SNRNP40-202ENST00000373720 OVOS2A0A0J9YW53 1432 aa11.18□□□□□ -0.62
SNRNP40-202ENST00000373720 OVOS2Q6IE36 1432 aa11.18□□□□□ -0.62
SNRNP40-202ENST00000373720 PTPRUQ92729 1446 aa11.18□□□□□ -0.62
SNRNP40-202ENST00000373720 SOS1Q07889 1333 aaPredicted RBP11.18□□□□□ -0.62
SNRNP40-202ENST00000373720 EIF5BO60841 1220 aaKnown RBP11.18□□□□□ -0.62
SNRNP40-202ENST00000373720 IL13P35225 146 aa11.18□□□□□ -0.62
SNRNP40-202ENST00000373720 ANP32AP39687 249 aaKnown RBP11.18□□□□□ -0.62
SNRNP40-202ENST00000373720 RIPK4P57078 832 aa11.18□□□□□ -0.62
SNRNP40-202ENST00000373720 ZKSCAN2Q63HK3 967 aa11.18□□□□□ -0.62
SNRNP40-202ENST00000373720 RSPH6AQ9H0K4 717 aa11.18□□□□□ -0.62
SNRNP40-202ENST00000373720 IFT57Q9NWB7 429 aa11.18□□□□□ -0.62
SNRNP40-202ENST00000373720 NRKQ7Z2Y5 1582 aa11.17□□□□□ -0.62
SNRNP40-202ENST00000373720 HTATSF1O43719 755 aaKnown RBP11.17□□□□□ -0.62
SNRNP40-202ENST00000373720 CLUAP1Q96AJ1 413 aa11.17□□□□□ -0.62
SNRNP40-202ENST00000373720 ACEP12821 1306 aa11.16□□□□□ -0.62
SNRNP40-202ENST00000373720 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.16□□□□□ -0.62
SNRNP40-202ENST00000373720 GALR2O43603 387 aaPredicted RBP11.16□□□□□ -0.62
SNRNP40-202ENST00000373720 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.16□□□□□ -0.62
SNRNP40-202ENST00000373720 RWDD1Q9H446 243 aaPredicted RBP11.16□□□□□ -0.62
SNRNP40-202ENST00000373720 DDX19BQ9UMR2 479 aa11.16□□□□□ -0.62
SNRNP40-202ENST00000373720 TRIM35Q9UPQ4 493 aa11.16□□□□□ -0.62
SNRNP40-202ENST00000373720 USP54Q70EL1 1684 aa11.16□□□□□ -0.62
SNRNP40-202ENST00000373720 BABAM1Q9NWV8 329 aa11.15□□□□□ -0.62
SNRNP40-202ENST00000373720 NCOA3Q9Y6Q9 1424 aa11.15□□□□□ -0.62
SNRNP40-202ENST00000373720 NALCNQ8IZF0 1738 aa11.15□□□□□ -0.63
SNRNP40-202ENST00000373720 ADAMTSL3P82987 1691 aa11.14□□□□□ -0.63
SNRNP40-202ENST00000373720 MAP2P11137 1827 aaKnown RBP11.14□□□□□ -0.63
SNRNP40-202ENST00000373720 DDRGK1Q96HY6 314 aa11.14□□□□□ -0.63
SNRNP40-202ENST00000373720 CFAP44Q96MT7 982 aa11.14□□□□□ -0.63
SNRNP40-202ENST00000373720 SBNO1A3KN83 1393 aa11.14□□□□□ -0.63
SNRNP40-202ENST00000373720 RTL1A6NKG5 1358 aa11.14□□□□□ -0.63
SNRNP40-202ENST00000373720 ARHGEF10O15013 1369 aa11.14□□□□□ -0.63
SNRNP40-202ENST00000373720 FLT4P35916 1363 aa11.14□□□□□ -0.63
SNRNP40-202ENST00000373720 PRR36Q9H6K5 1346 aa11.13□□□□□ -0.63
SNRNP40-202ENST00000373720 PLIN1O60240 522 aa11.13□□□□□ -0.63
SNRNP40-202ENST00000373720 PRKAR2BP31323 418 aa11.13□□□□□ -0.63
SNRNP40-202ENST00000373720 NEUROD2Q15784 382 aa11.13□□□□□ -0.63
SNRNP40-202ENST00000373720 DZIP1LQ8IYY4 767 aaKnown RBP11.13□□□□□ -0.63
SNRNP40-202ENST00000373720 BACH2Q9BYV9 841 aa11.13□□□□□ -0.63
SNRNP40-202ENST00000373720 PLEKHG2Q9H7P9 1386 aa11.13□□□□□ -0.63
SNRNP40-202ENST00000373720 BCAR3O75815 825 aa11.12□□□□□ -0.63
SNRNP40-202ENST00000373720 ZNF853P0CG23 659 aa11.12□□□□□ -0.63
SNRNP40-202ENST00000373720 CEBPAP49715 358 aaPredicted RBP11.12□□□□□ -0.63
SNRNP40-202ENST00000373720 MVPQ14764 893 aaKnown RBP11.12□□□□□ -0.63
SNRNP40-202ENST00000373720 ATF7IPQ6VMQ6 1270 aa11.12□□□□□ -0.63
SNRNP40-202ENST00000373720 NME9Q86XW9 330 aa11.12□□□□□ -0.63
SNRNP40-202ENST00000373720 FTSJ3Q8IY81 847 aaKnown RBP11.12□□□□□ -0.63
SNRNP40-202ENST00000373720 NGDNQ8NEJ9 315 aaKnown RBP11.12□□□□□ -0.63
SNRNP40-202ENST00000373720 SLC26A8Q96RN1 970 aa11.12□□□□□ -0.63
SNRNP40-202ENST00000373720 KCNH5Q8NCM2 988 aa11.11□□□□□ -0.63
SNRNP40-202ENST00000373720 PLSCR2Q9NRY7 297 aa11.11□□□□□ -0.63
SNRNP40-202ENST00000373720 KDRP35968 1356 aa11.11□□□□□ -0.63
SNRNP40-202ENST00000373720 KIAA0232Q92628 1395 aa11.11□□□□□ -0.63
SNRNP40-202ENST00000373720 FMN2Q9NZ56 1722 aa11.1□□□□□ -0.63
SNRNP40-202ENST00000373720 CHD2O14647 1828 aaKnown RBP11.1□□□□□ -0.63
SNRNP40-202ENST00000373720 KCNA6P17658 529 aa11.1□□□□□ -0.63
SNRNP40-202ENST00000373720 PDE4AP27815 886 aa11.1□□□□□ -0.63
SNRNP40-202ENST00000373720 HDAC1Q13547 482 aaPredicted RBP11.1□□□□□ -0.63
SNRNP40-202ENST00000373720 FAM161AQ3B820 660 aa11.1□□□□□ -0.63
SNRNP40-202ENST00000373720 GAS2L2Q8NHY3 880 aa11.1□□□□□ -0.63
SNRNP40-202ENST00000373720 IPO9Q96P70 1041 aaKnown RBP11.1□□□□□ -0.63
SNRNP40-202ENST00000373720 SMC4Q9NTJ3 1288 aa11.1□□□□□ -0.63
SNRNP40-202ENST00000373720 RRP7AQ9Y3A4 280 aaKnown RBP11.1□□□□□ -0.63
SNRNP40-202ENST00000373720 EXOSC9Q06265 439 aaKnown RBP11.09□□□□□ -0.63
SNRNP40-202ENST00000373720 C20orf194Q5TEA3 1177 aa11.09□□□□□ -0.63
SNRNP40-202ENST00000373720 ERICH6Q7L0X2 663 aa11.09□□□□□ -0.63
SNRNP40-202ENST00000373720 PHF12Q96QT6 1004 aa11.09□□□□□ -0.63
SNRNP40-202ENST00000373720 API5Q9BZZ5 524 aaKnown RBP11.09□□□□□ -0.63
SNRNP40-202ENST00000373720 ADGRL3Q9HAR2 1447 aa11.09□□□□□ -0.63
SNRNP40-202ENST00000373720 PPM1GO15355 546 aaPredicted RBP11.08□□□□□ -0.64
SNRNP40-202ENST00000373720 FRAT1Q92837 279 aaPredicted RBP11.08□□□□□ -0.64
SNRNP40-202ENST00000373720 ANP32EQ9BTT0 268 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms