RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 FERMT3Q86UX7 667 aa16.74■□□□□ 0.27
COL6A1-201ENST00000361866 CREBRFQ8IUR6 639 aa16.74■□□□□ 0.27
COL6A1-201ENST00000361866 CCAR2Q8N163 923 aaKnown RBP16.74■□□□□ 0.27
COL6A1-201ENST00000361866 NUTM1Q86Y26 1132 aa16.73■□□□□ 0.27
COL6A1-201ENST00000361866 UHRF1BP1Q6BDS2 1440 aa16.73■□□□□ 0.27
COL6A1-201ENST00000361866 KIF14Q15058 1648 aa16.73■□□□□ 0.27
COL6A1-201ENST00000361866 FAM135AQ9P2D6 1515 aa16.73■□□□□ 0.27
COL6A1-201ENST00000361866 NLRP6P59044 892 aa16.73■□□□□ 0.27
COL6A1-201ENST00000361866 CWC27Q6UX04 472 aaKnown RBP16.73■□□□□ 0.27
COL6A1-201ENST00000361866 CLASRPQ8N2M8 674 aaKnown RBP16.73■□□□□ 0.27
COL6A1-201ENST00000361866 USP25Q9UHP3 1055 aa16.73■□□□□ 0.27
COL6A1-201ENST00000361866 HDAC5Q9UQL6 1122 aa16.73■□□□□ 0.27
COL6A1-201ENST00000361866 NOS1P29475 1434 aa16.72■□□□□ 0.27
COL6A1-201ENST00000361866 TSPYL6Q8N831 410 aa16.72■□□□□ 0.27
COL6A1-201ENST00000361866 STK3Q13188 491 aa16.72■□□□□ 0.27
COL6A1-201ENST00000361866 COL17A1Q9UMD9 1497 aaPredicted RBP16.72■□□□□ 0.27
COL6A1-201ENST00000361866 WDR33Q9C0J8 1336 aaKnown RBP16.72■□□□□ 0.27
COL6A1-201ENST00000361866 G3BP1Q13283 466 aaKnown RBP eCLIP16.72■□□□□ 0.27
COL6A1-201ENST00000361866 CNTROBQ8N137 903 aa16.72■□□□□ 0.27
COL6A1-201ENST00000361866 ZSCAN23Q3MJ62 389 aa16.71■□□□□ 0.27
COL6A1-201ENST00000361866 CHMP4AQ9BY43 222 aa16.71■□□□□ 0.27
COL6A1-201ENST00000361866 MBIPQ9NS73 344 aa16.71■□□□□ 0.27
COL6A1-201ENST00000361866 SMC5Q8IY18 1101 aa16.71■□□□□ 0.27
COL6A1-201ENST00000361866 TULP1O00294 542 aaPredicted RBP16.71■□□□□ 0.26
COL6A1-201ENST00000361866 CCDC30Q5VVM6 783 aa16.71■□□□□ 0.26
COL6A1-201ENST00000361866 ZBTB40Q9NUA8 1239 aa16.71■□□□□ 0.26
COL6A1-201ENST00000361866 HDGFL1Q5TGJ6 251 aa16.7■□□□□ 0.26
COL6A1-201ENST00000361866 TPM4P67936 248 aa16.7■□□□□ 0.26
COL6A1-201ENST00000361866 ZNF830Q96NB3 372 aaPredicted RBP16.7■□□□□ 0.26
COL6A1-201ENST00000361866 FMNL2Q96PY5 1086 aa16.7■□□□□ 0.26
COL6A1-201ENST00000361866 PRIM1P49642 420 aaKnown RBP16.7■□□□□ 0.26
COL6A1-201ENST00000361866 ZGPATQ8N5A5 531 aaKnown RBP16.7■□□□□ 0.26
COL6A1-201ENST00000361866 WDR62O43379 1518 aa16.69■□□□□ 0.26
COL6A1-201ENST00000361866 FYB1O15117 783 aa16.69■□□□□ 0.26
COL6A1-201ENST00000361866 HMGN5P82970 282 aaKnown RBP16.69■□□□□ 0.26
COL6A1-201ENST00000361866 IDI1Q13907 227 aa16.69■□□□□ 0.26
COL6A1-201ENST00000361866 RNF20Q5VTR2 975 aa16.69■□□□□ 0.26
COL6A1-201ENST00000361866 MTERF4Q7Z6M4 381 aaKnown RBP16.69■□□□□ 0.26
COL6A1-201ENST00000361866 A2MP01023 1474 aa16.69■□□□□ 0.26
COL6A1-201ENST00000361866 SRGAP3O43295 1099 aa16.69■□□□□ 0.26
COL6A1-201ENST00000361866 SDSP20132 328 aa16.69■□□□□ 0.26
COL6A1-201ENST00000361866 HOMER1Q86YM7 354 aa16.69■□□□□ 0.26
COL6A1-201ENST00000361866 C14orf93Q9H972 538 aaKnown RBP16.69■□□□□ 0.26
COL6A1-201ENST00000361866 ZMYM4Q5VZL5 1548 aa16.68■□□□□ 0.26
COL6A1-201ENST00000361866 RAB3GAP1Q15042 981 aa16.68■□□□□ 0.26
COL6A1-201ENST00000361866 FSD1Q9BTV5 496 aa16.68■□□□□ 0.26
COL6A1-201ENST00000361866 PDCL3Q9H2J4 239 aa16.68■□□□□ 0.26
COL6A1-201ENST00000361866 TOMM22Q9NS69 142 aa16.68■□□□□ 0.26
COL6A1-201ENST00000361866 BLMP54132 1417 aaPredicted RBP16.68■□□□□ 0.26
COL6A1-201ENST00000361866 POLR3AO14802 1390 aaPredicted RBP16.68■□□□□ 0.26
COL6A1-201ENST00000361866 CCT4P50991 539 aaKnown RBP16.68■□□□□ 0.26
COL6A1-201ENST00000361866 TPD52L1Q16890 204 aaPredicted RBP16.68■□□□□ 0.26
COL6A1-201ENST00000361866 KIF3AQ9Y496 699 aa16.68■□□□□ 0.26
COL6A1-201ENST00000361866 RAPGEF6Q8TEU7 1601 aa16.68■□□□□ 0.26
COL6A1-201ENST00000361866 PIK3C2GO75747 1445 aa16.68■□□□□ 0.26
COL6A1-201ENST00000361866 CAMK4Q16566 473 aa16.68■□□□□ 0.26
COL6A1-201ENST00000361866 KRT24Q2M2I5 525 aa16.68■□□□□ 0.26
COL6A1-201ENST00000361866 ATAD2Q6PL18 1390 aa16.67■□□□□ 0.26
COL6A1-201ENST00000361866 TAF7LQ5H9L4 462 aa16.67■□□□□ 0.26
COL6A1-201ENST00000361866 C1orf141Q5JVX7 400 aa16.67■□□□□ 0.26
COL6A1-201ENST00000361866 C8orf58Q8NAV2 365 aa16.67■□□□□ 0.26
COL6A1-201ENST00000361866 MEIS3Q99687 375 aa16.67■□□□□ 0.26
COL6A1-201ENST00000361866 MX1P20591 662 aa16.67■□□□□ 0.26
COL6A1-201ENST00000361866 ABCC11Q96J66 1382 aa16.67■□□□□ 0.26
COL6A1-201ENST00000361866 SIL1Q9H173 461 aa16.67■□□□□ 0.26
COL6A1-201ENST00000361866 KDM4AO75164 1064 aa16.66■□□□□ 0.26
COL6A1-201ENST00000361866 TNNT3P45378 269 aaPredicted RBP16.66■□□□□ 0.26
COL6A1-201ENST00000361866 LARP1BQ659C4 914 aaKnown RBP16.66■□□□□ 0.26
COL6A1-201ENST00000361866 ARHGEF12Q9NZN5 1544 aa16.66■□□□□ 0.26
COL6A1-201ENST00000361866 CBX1P83916 185 aa16.66■□□□□ 0.26
COL6A1-201ENST00000361866 TTC22Q5TAA0 569 aa16.66■□□□□ 0.26
COL6A1-201ENST00000361866 SNX21Q969T3 373 aa16.66■□□□□ 0.26
COL6A1-201ENST00000361866 JAKMIP1Q96N16 626 aaKnown RBP16.66■□□□□ 0.26
COL6A1-201ENST00000361866 SDF4Q9BRK5 362 aa16.66■□□□□ 0.26
COL6A1-201ENST00000361866 DNMT1P26358 1616 aaKnown RBP16.66■□□□□ 0.26
COL6A1-201ENST00000361866 NEXNQ0ZGT2 675 aa16.66■□□□□ 0.26
COL6A1-201ENST00000361866 HSP90AB4PQ58FF6 505 aa16.66■□□□□ 0.26
COL6A1-201ENST00000361866 CCDC83Q8IWF9 413 aa16.66■□□□□ 0.26
COL6A1-201ENST00000361866 PHACTR3Q96KR7 559 aa16.65■□□□□ 0.26
COL6A1-201ENST00000361866 CCDC73Q6ZRK6 1079 aa16.65■□□□□ 0.26
COL6A1-201ENST00000361866 SLC52A1Q9NWF4 448 aa16.65■□□□□ 0.26
COL6A1-201ENST00000361866 RTEL1-TNFRSF6BF6WH68 1400 aa16.64■□□□□ 0.25
COL6A1-201ENST00000361866 CCDC192P0DO97 292 aa16.64■□□□□ 0.25
COL6A1-201ENST00000361866 CASTP20810 708 aaKnown RBP16.64■□□□□ 0.25
COL6A1-201ENST00000361866 TMX3Q96JJ7 454 aa16.64■□□□□ 0.25
COL6A1-201ENST00000361866 NEUROD6Q96NK8 337 aa16.64■□□□□ 0.25
COL6A1-201ENST00000361866 CYP46A1Q9Y6A2 500 aa16.64■□□□□ 0.25
COL6A1-201ENST00000361866 OTUD7AQ8TE49 926 aaPredicted RBP16.64■□□□□ 0.25
COL6A1-201ENST00000361866 HCLS1P14317 486 aaPredicted RBP16.63■□□□□ 0.25
COL6A1-201ENST00000361866 RPGRIP1LQ68CZ1 1315 aa16.63■□□□□ 0.25
COL6A1-201ENST00000361866 SRCIN1Q9C0H9 1055 aa16.63■□□□□ 0.25
COL6A1-201ENST00000361866 NUDT16Q96DE0 195 aaKnown RBP16.63■□□□□ 0.25
COL6A1-201ENST00000361866 TNMDQ9H2S6 317 aa16.63■□□□□ 0.25
COL6A1-201ENST00000361866 SYCP2Q9BX26 1530 aa16.63■□□□□ 0.25
COL6A1-201ENST00000361866 DTNBO60941 627 aa16.62■□□□□ 0.25
COL6A1-201ENST00000361866 FBXO31Q5XUX0 539 aaPredicted RBP16.62■□□□□ 0.25
COL6A1-201ENST00000361866 FILIP1Q7Z7B0 1213 aa16.62■□□□□ 0.25
COL6A1-201ENST00000361866 ZHX1Q9UKY1 873 aaPredicted RBP16.62■□□□□ 0.25
COL6A1-201ENST00000361866 SPG7Q9UQ90 795 aa16.62■□□□□ 0.25
COL6A1-201ENST00000361866 CCDC61Q9Y6R9 512 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms