RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 XRN1Q8IZH2 1706 aaKnown RBP11.92□□□□□ -0.5
UPF2-202ENST00000357604 CHRNA2Q15822 529 aa11.91□□□□□ -0.5
UPF2-202ENST00000357604 CABLES1Q8TDN4 633 aa11.91□□□□□ -0.5
UPF2-202ENST00000357604 DDX17Q92841 729 aaKnown RBP11.91□□□□□ -0.5
UPF2-202ENST00000357604 NEUROD2Q15784 382 aa11.91□□□□□ -0.5
UPF2-202ENST00000357604 RUNDC1Q96C34 613 aa11.91□□□□□ -0.5
UPF2-202ENST00000357604 CHMP4BQ9H444 224 aaKnown RBP11.91□□□□□ -0.5
UPF2-202ENST00000357604 HNRNPUQ00839 825 aaKnown RBP eCLIP11.9□□□□□ -0.5
UPF2-202ENST00000357604 DDX54Q8TDD1 881 aaKnown RBP11.9□□□□□ -0.5
UPF2-202ENST00000357604 MS4A1P11836 297 aa11.9□□□□□ -0.5
UPF2-202ENST00000357604 AFF2P51816 1311 aa11.9□□□□□ -0.5
UPF2-202ENST00000357604 CHD2O14647 1828 aaKnown RBP11.9□□□□□ -0.51
UPF2-202ENST00000357604 ZNF530Q6P9A1 599 aaPredicted RBP11.9□□□□□ -0.51
UPF2-202ENST00000357604 MSH5O43196 834 aa11.89□□□□□ -0.51
UPF2-202ENST00000357604 SOS2Q07890 1332 aaPredicted RBP11.89□□□□□ -0.51
UPF2-202ENST00000357604 PCDH11XQ9BZA7 1347 aa11.89□□□□□ -0.51
UPF2-202ENST00000357604 PCDH11YQ9BZA8 1340 aa11.89□□□□□ -0.51
UPF2-202ENST00000357604 ARHGEF28Q8N1W1 1705 aaKnown RBP11.89□□□□□ -0.51
UPF2-202ENST00000357604 RBM6P78332 1123 aaKnown RBP11.89□□□□□ -0.51
UPF2-202ENST00000357604 PHLPP1O60346 1717 aa11.89□□□□□ -0.51
UPF2-202ENST00000357604 NPC1L1Q9UHC9 1359 aa11.89□□□□□ -0.51
UPF2-202ENST00000357604 FYB1O15117 783 aa11.89□□□□□ -0.51
UPF2-202ENST00000357604 TMOD3Q9NYL9 352 aa11.89□□□□□ -0.51
UPF2-202ENST00000357604 HOXC9P31274 260 aa11.88□□□□□ -0.51
UPF2-202ENST00000357604 NBPF14Q5TI25 921 aa11.88□□□□□ -0.51
UPF2-202ENST00000357604 SMARCC1Q92922 1105 aaPredicted RBP11.88□□□□□ -0.51
UPF2-202ENST00000357604 PRR36Q9H6K5 1346 aa11.88□□□□□ -0.51
UPF2-202ENST00000357604 FCHSD2O94868 740 aa11.88□□□□□ -0.51
UPF2-202ENST00000357604 ZCRB1Q8TBF4 217 aaKnown RBP11.88□□□□□ -0.51
UPF2-202ENST00000357604 IFNL2Q8IZJ0 200 aa11.88□□□□□ -0.51
UPF2-202ENST00000357604 STK31Q9BXU1 1019 aa11.88□□□□□ -0.51
UPF2-202ENST00000357604 PRKRIP1Q9H875 184 aaPredicted RBP11.87□□□□□ -0.51
UPF2-202ENST00000357604 BLMP54132 1417 aaPredicted RBP11.87□□□□□ -0.51
UPF2-202ENST00000357604 SULT6B1Q6IMI4 303 aa11.87□□□□□ -0.51
UPF2-202ENST00000357604 AATKQ6ZMQ8 1374 aa11.86□□□□□ -0.51
UPF2-202ENST00000357604 PNPLA6Q8IY17 1366 aa11.86□□□□□ -0.51
UPF2-202ENST00000357604 FMN2Q9NZ56 1722 aa11.86□□□□□ -0.51
UPF2-202ENST00000357604 HDAC5Q9UQL6 1122 aa11.86□□□□□ -0.51
UPF2-202ENST00000357604 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.86□□□□□ -0.51
UPF2-202ENST00000357604 SALL2Q9Y467 1007 aaPredicted RBP11.85□□□□□ -0.51
UPF2-202ENST00000357604 HMOX1P09601 288 aa11.85□□□□□ -0.51
UPF2-202ENST00000357604 BAG6P46379 1132 aa11.85□□□□□ -0.51
UPF2-202ENST00000357604 NRXN3Q9Y4C0 1643 aa11.85□□□□□ -0.51
UPF2-202ENST00000357604 USP31Q70CQ4 1352 aa11.85□□□□□ -0.51
UPF2-202ENST00000357604 GNAT3A8MTJ3 354 aa11.84□□□□□ -0.51
UPF2-202ENST00000357604 EMILIN1Q9Y6C2 1016 aa11.84□□□□□ -0.51
UPF2-202ENST00000357604 KIAA0232Q92628 1395 aa11.84□□□□□ -0.51
UPF2-202ENST00000357604 GNAI1P63096 354 aa11.84□□□□□ -0.51
UPF2-202ENST00000357604 RIPK4P57078 832 aa11.83□□□□□ -0.52
UPF2-202ENST00000357604 VPS72Q15906 364 aa11.83□□□□□ -0.52
UPF2-202ENST00000357604 CARD10Q9BWT7 1032 aa11.83□□□□□ -0.52
UPF2-202ENST00000357604 PRKAR2BP31323 418 aa11.83□□□□□ -0.52
UPF2-202ENST00000357604 GOLGA2Q08379 1002 aa11.83□□□□□ -0.52
UPF2-202ENST00000357604 TEX13AQ9BXU3 409 aaPredicted RBP11.83□□□□□ -0.52
UPF2-202ENST00000357604 FAM196AQ6ZSG2 479 aa11.82□□□□□ -0.52
UPF2-202ENST00000357604 RBM42Q9BTD8 480 aaKnown RBP11.82□□□□□ -0.52
UPF2-202ENST00000357604 FAM98CQ17RN3 349 aaKnown RBP11.82□□□□□ -0.52
UPF2-202ENST00000357604 STRCQ7RTU9 1775 aa11.82□□□□□ -0.52
UPF2-202ENST00000357604 ROBO1Q9Y6N7 1651 aa11.82□□□□□ -0.52
UPF2-202ENST00000357604 HSP90B1P14625 803 aaKnown RBP11.82□□□□□ -0.52
UPF2-202ENST00000357604 WDR17Q8IZU2 1322 aa11.82□□□□□ -0.52
UPF2-202ENST00000357604 HTATSF1O43719 755 aaKnown RBP11.81□□□□□ -0.52
UPF2-202ENST00000357604 ZNF330Q9Y3S2 320 aaPredicted RBP11.81□□□□□ -0.52
UPF2-202ENST00000357604 A0A087WZG4 1122 aa11.81□□□□□ -0.52
UPF2-202ENST00000357604 KRT27Q7Z3Y8 459 aa11.81□□□□□ -0.52
UPF2-202ENST00000357604 CPSF1Q10570 1443 aaKnown RBP11.81□□□□□ -0.52
UPF2-202ENST00000357604 INSRP06213 1382 aa11.81□□□□□ -0.52
UPF2-202ENST00000357604 MAP3K19Q56UN5 1328 aa11.8□□□□□ -0.52
UPF2-202ENST00000357604 CCDC146Q8IYE0 955 aa11.8□□□□□ -0.52
UPF2-202ENST00000357604 LTBP4Q8N2S1 1624 aa11.8□□□□□ -0.52
UPF2-202ENST00000357604 IPO8O15397 1037 aaKnown RBP11.8□□□□□ -0.52
UPF2-202ENST00000357604 KIF6Q6ZMV9 814 aa11.8□□□□□ -0.52
UPF2-202ENST00000357604 TSPYL4Q9UJ04 414 aa11.8□□□□□ -0.52
UPF2-202ENST00000357604 DDX58O95786 925 aaKnown RBP11.8□□□□□ -0.52
UPF2-202ENST00000357604 ARHGEF25Q86VW2 580 aa11.8□□□□□ -0.52
UPF2-202ENST00000357604 CRB1P82279 1406 aa11.8□□□□□ -0.52
UPF2-202ENST00000357604 STARD3NLO95772 234 aa11.79□□□□□ -0.52
UPF2-202ENST00000357604 AHDC1Q5TGY3 1603 aaPredicted RBP11.79□□□□□ -0.52
UPF2-202ENST00000357604 AKAP4Q5JQC9 854 aa11.79□□□□□ -0.52
UPF2-202ENST00000357604 GJD4Q96KN9 370 aaPredicted RBP11.79□□□□□ -0.52
UPF2-202ENST00000357604 NALCNQ8IZF0 1738 aa11.79□□□□□ -0.52
UPF2-202ENST00000357604 USP19O94966 1318 aa11.79□□□□□ -0.52
UPF2-202ENST00000357604 USHBP1Q8N6Y0 703 aa11.78□□□□□ -0.52
UPF2-202ENST00000357604 STK32BQ9NY57 414 aa11.78□□□□□ -0.52
UPF2-202ENST00000357604 NFE2L2Q16236 605 aa11.78□□□□□ -0.52
UPF2-202ENST00000357604 POLKQ9UBT6 870 aa11.77□□□□□ -0.52
UPF2-202ENST00000357604 OVOS2A0A0G2JMS6 1433 aa11.77□□□□□ -0.52
UPF2-202ENST00000357604 OVOS2A0A0J9YW53 1432 aa11.77□□□□□ -0.52
UPF2-202ENST00000357604 OVOS2Q6IE36 1432 aa11.77□□□□□ -0.52
UPF2-202ENST00000357604 GTF2E1P29083 439 aaPredicted RBP11.77□□□□□ -0.52
UPF2-202ENST00000357604 EIF4A2Q14240 407 aaKnown RBP11.77□□□□□ -0.52
UPF2-202ENST00000357604 ILDR1Q86SU0 546 aaPredicted RBP11.77□□□□□ -0.52
UPF2-202ENST00000357604 AK7Q96M32 723 aa11.77□□□□□ -0.52
UPF2-202ENST00000357604 BCL11BQ9C0K0 894 aaPredicted RBP11.77□□□□□ -0.52
UPF2-202ENST00000357604 ZRANB1Q9UGI0 708 aa11.77□□□□□ -0.52
UPF2-202ENST00000357604 BTBD11A6QL63 1104 aa11.77□□□□□ -0.53
UPF2-202ENST00000357604 FTSJ3Q8IY81 847 aaKnown RBP11.77□□□□□ -0.53
UPF2-202ENST00000357604 USP32Q8NFA0 1604 aa11.77□□□□□ -0.53
UPF2-202ENST00000357604 CPDO75976 1380 aa11.77□□□□□ -0.53
UPF2-202ENST00000357604 E9PSI1 815 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms