RNA–Protein interactions for RNA: ENST00000336904.7

SNCA-201, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 3,041 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-201ENST00000336904 EDC4Q6P2E9 1401 aaKnown RBP11.28□□□□□ -0.6
SNCA-201ENST00000336904 TTC21BQ7Z4L5 1316 aa11.28□□□□□ -0.6
SNCA-201ENST00000336904 ATP7BP35670 1465 aa11.28□□□□□ -0.6
SNCA-201ENST00000336904 EID1Q9Y6B2 187 aa11.27□□□□□ -0.6
SNCA-201ENST00000336904 FAM135BQ49AJ0 1406 aa11.27□□□□□ -0.6
SNCA-201ENST00000336904 ANKRD26Q9UPS8 1709 aa11.27□□□□□ -0.61
SNCA-201ENST00000336904 HDGFP51858 240 aaKnown RBP11.27□□□□□ -0.61
SNCA-201ENST00000336904 NECTIN2Q92692 538 aa11.27□□□□□ -0.61
SNCA-201ENST00000336904 LNPKQ9C0E8 428 aa11.27□□□□□ -0.61
SNCA-201ENST00000336904 REREQ9P2R6 1566 aa11.26□□□□□ -0.61
SNCA-201ENST00000336904 APBB1O00213 710 aa11.26□□□□□ -0.61
SNCA-201ENST00000336904 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.26□□□□□ -0.61
SNCA-201ENST00000336904 MED14O60244 1454 aa11.26□□□□□ -0.61
SNCA-201ENST00000336904 KCNA6P17658 529 aa11.26□□□□□ -0.61
SNCA-201ENST00000336904 XPCQ01831 940 aaPredicted RBP11.26□□□□□ -0.61
SNCA-201ENST00000336904 SLKQ9H2G2 1235 aaPredicted RBP11.26□□□□□ -0.61
SNCA-201ENST00000336904 RWDD1Q9H446 243 aaPredicted RBP11.26□□□□□ -0.61
SNCA-201ENST00000336904 UBR1Q8IWV7 1749 aa11.26□□□□□ -0.61
SNCA-201ENST00000336904 TWISTNBQ3B726 338 aaPredicted RBP11.25□□□□□ -0.61
SNCA-201ENST00000336904 USHBP1Q8N6Y0 703 aa11.25□□□□□ -0.61
SNCA-201ENST00000336904 USP19O94966 1318 aa11.25□□□□□ -0.61
SNCA-201ENST00000336904 VAMP4O75379 141 aa11.25□□□□□ -0.61
SNCA-201ENST00000336904 DLC1Q96QB1 1528 aa11.25□□□□□ -0.61
SNCA-201ENST00000336904 MFAP1P55081 439 aaKnown RBP11.25□□□□□ -0.61
SNCA-201ENST00000336904 CDC42BPGQ6DT37 1551 aa11.23□□□□□ -0.61
SNCA-201ENST00000336904 MAP3K19Q56UN5 1328 aa11.23□□□□□ -0.61
SNCA-201ENST00000336904 NLRP6P59044 892 aa11.23□□□□□ -0.61
SNCA-201ENST00000336904 PNNQ9H307 717 aaKnown RBP11.23□□□□□ -0.61
SNCA-201ENST00000336904 DDX19BQ9UMR2 479 aa11.23□□□□□ -0.61
SNCA-201ENST00000336904 AMPHP49418 695 aa11.22□□□□□ -0.61
SNCA-201ENST00000336904 RIMS1Q86UR5 1692 aaKnown RBP11.22□□□□□ -0.61
SNCA-201ENST00000336904 RGPD8O14715 1765 aaPredicted RBP11.22□□□□□ -0.61
SNCA-201ENST00000336904 LMOD2Q6P5Q4 547 aa11.22□□□□□ -0.61
SNCA-201ENST00000336904 MRPL50Q8N5N7 158 aaKnown RBP11.22□□□□□ -0.61
SNCA-201ENST00000336904 DDRGK1Q96HY6 314 aa11.22□□□□□ -0.61
SNCA-201ENST00000336904 ZBTB40Q9NUA8 1239 aa11.22□□□□□ -0.61
SNCA-201ENST00000336904 ZNF692Q9BU19 519 aaPredicted RBP11.21□□□□□ -0.61
SNCA-201ENST00000336904 SETD1BQ9UPS6 1966 aaKnown RBP11.21□□□□□ -0.61
SNCA-201ENST00000336904 GNAI1P63096 354 aa11.21□□□□□ -0.62
SNCA-201ENST00000336904 ANKRD45Q5TZF3 282 aa11.21□□□□□ -0.62
SNCA-201ENST00000336904 ZNF428Q96B54 188 aa11.21□□□□□ -0.62
SNCA-201ENST00000336904 KIF16BQ96L93 1317 aa11.21□□□□□ -0.62
SNCA-201ENST00000336904 DLG5Q8TDM6 1919 aa11.2□□□□□ -0.62
SNCA-201ENST00000336904 IL16Q14005 1332 aa11.2□□□□□ -0.62
SNCA-201ENST00000336904 PLEKHG1Q9ULL1 1385 aa11.2□□□□□ -0.62
SNCA-201ENST00000336904 USP6P35125 1406 aa11.2□□□□□ -0.62
SNCA-201ENST00000336904 ITSN1Q15811 1721 aa11.2□□□□□ -0.62
SNCA-201ENST00000336904 IPO8O15397 1037 aaKnown RBP11.2□□□□□ -0.62
SNCA-201ENST00000336904 CDK12Q9NYV4 1490 aaPredicted RBP11.2□□□□□ -0.62
SNCA-201ENST00000336904 F6X3S4 739 aa11.19□□□□□ -0.62
SNCA-201ENST00000336904 MTHFSDQ2M296 383 aaKnown RBP11.19□□□□□ -0.62
SNCA-201ENST00000336904 FRAT2O75474 233 aaPredicted RBP11.19□□□□□ -0.62
SNCA-201ENST00000336904 NFKBIBQ15653 356 aa11.19□□□□□ -0.62
SNCA-201ENST00000336904 SLC4A10Q6U841 1118 aa11.19□□□□□ -0.62
SNCA-201ENST00000336904 ABTB2Q8N961 1025 aa11.19□□□□□ -0.62
SNCA-201ENST00000336904 CFAP44Q96MT7 982 aa11.19□□□□□ -0.62
SNCA-201ENST00000336904 IFT57Q9NWB7 429 aa11.19□□□□□ -0.62
SNCA-201ENST00000336904 C3P01024 1663 aa11.18□□□□□ -0.62
SNCA-201ENST00000336904 SIRT2Q8IXJ6 389 aa11.18□□□□□ -0.62
SNCA-201ENST00000336904 EYA1Q99502 592 aa11.18□□□□□ -0.62
SNCA-201ENST00000336904 TECPR2O15040 1411 aa11.18□□□□□ -0.62
SNCA-201ENST00000336904 MON2Q7Z3U7 1717 aa11.18□□□□□ -0.62
SNCA-201ENST00000336904 THEMISQ8N1K5 641 aaPredicted RBP11.18□□□□□ -0.62
SNCA-201ENST00000336904 PEAK1Q9H792 1746 aa11.17□□□□□ -0.62
SNCA-201ENST00000336904 ZBTB7BO15156 539 aaPredicted RBP11.17□□□□□ -0.62
SNCA-201ENST00000336904 ZNF853P0CG23 659 aa11.17□□□□□ -0.62
SNCA-201ENST00000336904 G2E3Q7L622 706 aa11.17□□□□□ -0.62
SNCA-201ENST00000336904 ARXQ96QS3 562 aa11.17□□□□□ -0.62
SNCA-201ENST00000336904 PLEKHG3A1L390 1219 aa11.17□□□□□ -0.62
SNCA-201ENST00000336904 CT47B1P0C2W7 299 aaPredicted RBP11.17□□□□□ -0.62
SNCA-201ENST00000336904 AATKQ6ZMQ8 1374 aa11.17□□□□□ -0.62
SNCA-201ENST00000336904 ALDH1L2Q3SY69 923 aa11.17□□□□□ -0.62
SNCA-201ENST00000336904 C16orf71Q8IYS4 520 aaPredicted RBP11.17□□□□□ -0.62
SNCA-201ENST00000336904 OVOS2A0A0J9YW53 1432 aa11.16□□□□□ -0.62
SNCA-201ENST00000336904 OVOS2Q6IE36 1432 aa11.16□□□□□ -0.62
SNCA-201ENST00000336904 SMARCA5O60264 1052 aaPredicted RBP11.16□□□□□ -0.62
SNCA-201ENST00000336904 AKAP12Q02952 1782 aa11.16□□□□□ -0.62
SNCA-201ENST00000336904 SLC4A2P04920 1241 aa11.15□□□□□ -0.62
SNCA-201ENST00000336904 ESCO1Q5FWF5 840 aa11.15□□□□□ -0.62
SNCA-201ENST00000336904 OTUD7AQ8TE49 926 aaPredicted RBP11.15□□□□□ -0.62
SNCA-201ENST00000336904 TSPYL4Q9UJ04 414 aa11.15□□□□□ -0.62
SNCA-201ENST00000336904 HDAC1Q13547 482 aaPredicted RBP11.15□□□□□ -0.62
SNCA-201ENST00000336904 FOXD4L1Q9NU39 408 aa11.15□□□□□ -0.62
SNCA-201ENST00000336904 FER1L4A9Z1Z3 1794 aa11.14□□□□□ -0.63
SNCA-201ENST00000336904 CHD1LQ86WJ1 897 aa11.14□□□□□ -0.63
SNCA-201ENST00000336904 RTF1Q92541 710 aaKnown RBP11.14□□□□□ -0.63
SNCA-201ENST00000336904 UPF2Q9HAU5 1272 aaKnown RBP11.14□□□□□ -0.63
SNCA-201ENST00000336904 CEP170BQ9Y4F5 1589 aaPredicted RBP11.14□□□□□ -0.63
SNCA-201ENST00000336904 CALD1Q05682 793 aaKnown RBP11.14□□□□□ -0.63
SNCA-201ENST00000336904 SMC5Q8IY18 1101 aa11.14□□□□□ -0.63
SNCA-201ENST00000336904 MEIS3Q99687 375 aa11.14□□□□□ -0.63
SNCA-201ENST00000336904 TBX22Q9Y458 520 aa11.14□□□□□ -0.63
SNCA-201ENST00000336904 KNDC1Q76NI1 1749 aa11.14□□□□□ -0.63
SNCA-201ENST00000336904 LMOD3Q0VAK6 560 aa11.14□□□□□ -0.63
SNCA-201ENST00000336904 LRRC59Q96AG4 307 aaKnown RBP11.14□□□□□ -0.63
SNCA-201ENST00000336904 SIRT1Q96EB6 747 aa11.14□□□□□ -0.63
SNCA-201ENST00000336904 DDX17Q92841 729 aaKnown RBP11.13□□□□□ -0.63
SNCA-201ENST00000336904 ORAI2Q96SN7 254 aa11.13□□□□□ -0.63
SNCA-201ENST00000336904 DIP2AQ14689 1571 aa11.13□□□□□ -0.63
SNCA-201ENST00000336904 NUCB1Q02818 461 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms