RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 SSFA2P28290 1259 aa17.82■□□□□ 0.44
TCOF1-201ENST00000323668 NEXNQ0ZGT2 675 aa17.82■□□□□ 0.44
TCOF1-201ENST00000323668 NUDT16Q96DE0 195 aaKnown RBP17.82■□□□□ 0.44
TCOF1-201ENST00000323668 CLASRPQ8N2M8 674 aaKnown RBP17.82■□□□□ 0.44
TCOF1-201ENST00000323668 TSPY26PQ9H489 355 aa17.82■□□□□ 0.44
TCOF1-201ENST00000323668 CD109Q6YHK3 1445 aa17.82■□□□□ 0.44
TCOF1-201ENST00000323668 XRCC6P12956 609 aaKnown RBP eCLIP17.82■□□□□ 0.44
TCOF1-201ENST00000323668 GOLGA6L19H0YKK7 550 aa17.81■□□□□ 0.44
TCOF1-201ENST00000323668 SMC5Q8IY18 1101 aa17.81■□□□□ 0.44
TCOF1-201ENST00000323668 ARHGAP45Q92619 1136 aa17.81■□□□□ 0.44
TCOF1-201ENST00000323668 ADGBQ8N7X0 1667 aa17.81■□□□□ 0.44
TCOF1-201ENST00000323668 NME9Q86XW9 330 aa17.8■□□□□ 0.44
TCOF1-201ENST00000323668 EIF4G3O43432 1585 aaKnown RBP17.8■□□□□ 0.44
TCOF1-201ENST00000323668 TPM4P67936 248 aa17.8■□□□□ 0.44
TCOF1-201ENST00000323668 ZSCAN30Q86W11 494 aa17.8■□□□□ 0.44
TCOF1-201ENST00000323668 MBD5Q9P267 1494 aa17.8■□□□□ 0.44
TCOF1-201ENST00000323668 DDX58O95786 925 aaKnown RBP17.8■□□□□ 0.44
TCOF1-201ENST00000323668 SRCIN1Q9C0H9 1055 aa17.79■□□□□ 0.44
TCOF1-201ENST00000323668 SF3A1Q15459 793 aaKnown RBP17.79■□□□□ 0.44
TCOF1-201ENST00000323668 BECN2A8MW95 431 aa17.79■□□□□ 0.44
TCOF1-201ENST00000323668 NUTM2GQ5VZR2 741 aa17.79■□□□□ 0.44
TCOF1-201ENST00000323668 WDR33Q9C0J8 1336 aaKnown RBP17.78■□□□□ 0.44
TCOF1-201ENST00000323668 SMARCA5O60264 1052 aaPredicted RBP17.78■□□□□ 0.44
TCOF1-201ENST00000323668 MCM10Q7L590 875 aa17.78■□□□□ 0.44
TCOF1-201ENST00000323668 MAP7D2Q96T17 732 aa17.78■□□□□ 0.44
TCOF1-201ENST00000323668 EXOC6BQ9Y2D4 811 aa17.78■□□□□ 0.44
TCOF1-201ENST00000323668 HDGFL1Q5TGJ6 251 aa17.78■□□□□ 0.44
TCOF1-201ENST00000323668 ZBTB40Q9NUA8 1239 aa17.78■□□□□ 0.44
TCOF1-201ENST00000323668 SNX21Q969T3 373 aa17.78■□□□□ 0.44
TCOF1-201ENST00000323668 LETM1O95202 739 aaPredicted RBP17.78■□□□□ 0.44
TCOF1-201ENST00000323668 MBIPQ9NS73 344 aa17.78■□□□□ 0.44
TCOF1-201ENST00000323668 ZNF330Q9Y3S2 320 aaPredicted RBP17.78■□□□□ 0.44
TCOF1-201ENST00000323668 BICD2Q8TD16 824 aa17.77■□□□□ 0.44
TCOF1-201ENST00000323668 ABCC10Q5T3U5 1492 aa17.77■□□□□ 0.44
TCOF1-201ENST00000323668 CHMP4CQ96CF2 233 aa17.77■□□□□ 0.43
TCOF1-201ENST00000323668 TRMT2AQ8IZ69 625 aaKnown RBP17.76■□□□□ 0.43
TCOF1-201ENST00000323668 ZNF521Q96K83 1311 aa17.76■□□□□ 0.43
TCOF1-201ENST00000323668 FIBPO43427 364 aa17.75■□□□□ 0.43
TCOF1-201ENST00000323668 CCDC9Q9Y3X0 531 aaKnown RBP17.75■□□□□ 0.43
TCOF1-201ENST00000323668 BAG4O95429 457 aaKnown RBP17.75■□□□□ 0.43
TCOF1-201ENST00000323668 FBLN1P23142 703 aa17.75■□□□□ 0.43
TCOF1-201ENST00000323668 PANK2Q9BZ23 570 aa17.75■□□□□ 0.43
TCOF1-201ENST00000323668 MAGI2Q86UL8 1455 aa17.75■□□□□ 0.43
TCOF1-201ENST00000323668 MIS18AQ9NYP9 233 aa17.75■□□□□ 0.43
TCOF1-201ENST00000323668 MTERF4Q7Z6M4 381 aaKnown RBP17.75■□□□□ 0.43
TCOF1-201ENST00000323668 TAF7LQ5H9L4 462 aa17.74■□□□□ 0.43
TCOF1-201ENST00000323668 RRP9O43818 475 aaKnown RBP17.74■□□□□ 0.43
TCOF1-201ENST00000323668 PSME1Q06323 249 aa17.74■□□□□ 0.43
TCOF1-201ENST00000323668 PSMA5P28066 241 aa17.73■□□□□ 0.43
TCOF1-201ENST00000323668 KLHL40Q2TBA0 621 aa17.73■□□□□ 0.43
TCOF1-201ENST00000323668 FBXO31Q5XUX0 539 aaPredicted RBP17.73■□□□□ 0.43
TCOF1-201ENST00000323668 IL1RAPL2Q9NP60 686 aa17.73■□□□□ 0.43
TCOF1-201ENST00000323668 WASLO00401 505 aaPredicted RBP17.73■□□□□ 0.43
TCOF1-201ENST00000323668 ARHGEF5Q12774 1597 aa17.73■□□□□ 0.43
TCOF1-201ENST00000323668 SYCE3A1L190 88 aa17.73■□□□□ 0.43
TCOF1-201ENST00000323668 SASS6Q6UVJ0 657 aa17.73■□□□□ 0.43
TCOF1-201ENST00000323668 ABTB2Q8N961 1025 aa17.73■□□□□ 0.43
TCOF1-201ENST00000323668 PDCP20941 246 aa17.72■□□□□ 0.43
TCOF1-201ENST00000323668 MAST1Q9Y2H9 1570 aa17.72■□□□□ 0.43
TCOF1-201ENST00000323668 MX1P20591 662 aa17.72■□□□□ 0.43
TCOF1-201ENST00000323668 TTC22Q5TAA0 569 aa17.72■□□□□ 0.43
TCOF1-201ENST00000323668 FAM83GA6ND36 823 aa17.72■□□□□ 0.43
TCOF1-201ENST00000323668 CLCN1P35523 988 aa17.72■□□□□ 0.43
TCOF1-201ENST00000323668 MRPL50Q8N5N7 158 aaKnown RBP17.72■□□□□ 0.43
TCOF1-201ENST00000323668 UPF3BQ9BZI7 483 aaKnown RBP17.72■□□□□ 0.43
TCOF1-201ENST00000323668 PTPRCP08575 1304 aa17.71■□□□□ 0.42
TCOF1-201ENST00000323668 SRGAP3O43295 1099 aa17.7■□□□□ 0.42
TCOF1-201ENST00000323668 VAMP4O75379 141 aa17.7■□□□□ 0.42
TCOF1-201ENST00000323668 RBM10P98175 930 aaKnown RBP17.7■□□□□ 0.42
TCOF1-201ENST00000323668 F6X3S4 739 aa17.7■□□□□ 0.42
TCOF1-201ENST00000323668 AIMP1Q12904 312 aaKnown RBP17.7■□□□□ 0.42
TCOF1-201ENST00000323668 TPM3P06753 285 aa17.7■□□□□ 0.42
TCOF1-201ENST00000323668 HMGN5P82970 282 aaKnown RBP17.7■□□□□ 0.42
TCOF1-201ENST00000323668 RBM42Q9BTD8 480 aaKnown RBP17.7■□□□□ 0.42
TCOF1-201ENST00000323668 FSD1Q9BTV5 496 aa17.7■□□□□ 0.42
TCOF1-201ENST00000323668 RIC3Q7Z5B4 369 aa17.69■□□□□ 0.42
TCOF1-201ENST00000323668 CYP46A1Q9Y6A2 500 aa17.69■□□□□ 0.42
TCOF1-201ENST00000323668 MAP4K4O95819 1239 aaPredicted RBP17.69■□□□□ 0.42
TCOF1-201ENST00000323668 TTC5Q8N0Z6 440 aa17.69■□□□□ 0.42
TCOF1-201ENST00000323668 POLKQ9UBT6 870 aa17.69■□□□□ 0.42
TCOF1-201ENST00000323668 TRHP20396 242 aaPredicted RBP17.69■□□□□ 0.42
TCOF1-201ENST00000323668 NCBP3Q53F19 620 aaKnown RBP17.69■□□□□ 0.42
TCOF1-201ENST00000323668 CEP170Q5SW79 1584 aa17.68■□□□□ 0.42
TCOF1-201ENST00000323668 ERC1Q8IUD2 1116 aa17.68■□□□□ 0.42
TCOF1-201ENST00000323668 BCORL1Q5H9F3 1711 aa17.68■□□□□ 0.42
TCOF1-201ENST00000323668 HIP1O00291 1037 aa17.68■□□□□ 0.42
TCOF1-201ENST00000323668 ZNF592Q92610 1267 aa17.68■□□□□ 0.42
TCOF1-201ENST00000323668 MPNDQ8N594 471 aa17.68■□□□□ 0.42
TCOF1-201ENST00000323668 C8orf58Q8NAV2 365 aa17.68■□□□□ 0.42
TCOF1-201ENST00000323668 RAB3GAP1Q15042 981 aa17.67■□□□□ 0.42
TCOF1-201ENST00000323668 PTPRTO14522 1441 aa17.67■□□□□ 0.42
TCOF1-201ENST00000323668 TSPYL6Q8N831 410 aa17.67■□□□□ 0.42
TCOF1-201ENST00000323668 RBM25P49756 843 aaKnown RBP17.67■□□□□ 0.42
TCOF1-201ENST00000323668 ANKRD44Q8N8A2 993 aa17.67■□□□□ 0.42
TCOF1-201ENST00000323668 SDSP20132 328 aa17.67■□□□□ 0.42
TCOF1-201ENST00000323668 CDK11BP21127 795 aaKnown RBP17.67■□□□□ 0.42
TCOF1-201ENST00000323668 LRRFIP1Q32MZ4 808 aaKnown RBP17.67■□□□□ 0.42
TCOF1-201ENST00000323668 CCDC34Q96HJ3 373 aa17.67■□□□□ 0.42
TCOF1-201ENST00000323668 SLC26A8Q96RN1 970 aa17.67■□□□□ 0.42
TCOF1-201ENST00000323668 AEBP1Q8IUX7 1158 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms