RNA–Protein interactions for RNA: ENST00000321105.9

TOP3A-201, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,056 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-201ENST00000321105 CHD1O14646 1710 aa13.51□□□□□ -0.25
TOP3A-201ENST00000321105 SRGAP3O43295 1099 aa13.5□□□□□ -0.25
TOP3A-201ENST00000321105 G3BP1Q13283 466 aaKnown RBP eCLIP13.5□□□□□ -0.25
TOP3A-201ENST00000321105 GPATCH3Q96I76 525 aa13.5□□□□□ -0.25
TOP3A-201ENST00000321105 RBM42Q9BTD8 480 aaKnown RBP13.5□□□□□ -0.25
TOP3A-201ENST00000321105 DDX49Q9Y6V7 483 aaKnown RBP13.5□□□□□ -0.25
TOP3A-201ENST00000321105 YTHDC2Q9H6S0 1430 aaKnown RBP13.5□□□□□ -0.25
TOP3A-201ENST00000321105 NUTM2BA6NNL0 878 aaPredicted RBP13.5□□□□□ -0.25
TOP3A-201ENST00000321105 NUTM2EB1AL46 878 aaPredicted RBP13.5□□□□□ -0.25
TOP3A-201ENST00000321105 SEC24BO95487 1268 aa13.5□□□□□ -0.25
TOP3A-201ENST00000321105 NUTM2AQ8IVF1 878 aaPredicted RBP13.5□□□□□ -0.25
TOP3A-201ENST00000321105 CFAP44Q96MT7 982 aa13.5□□□□□ -0.25
TOP3A-201ENST00000321105 POGZQ7Z3K3 1410 aa13.5□□□□□ -0.25
TOP3A-201ENST00000321105 HSP90B1P14625 803 aaKnown RBP13.49□□□□□ -0.25
TOP3A-201ENST00000321105 NUTM1Q86Y26 1132 aa13.49□□□□□ -0.25
TOP3A-201ENST00000321105 DDX58O95786 925 aaKnown RBP13.49□□□□□ -0.25
TOP3A-201ENST00000321105 DDX17Q92841 729 aaKnown RBP13.49□□□□□ -0.25
TOP3A-201ENST00000321105 CHMP4AQ9BY43 222 aa13.49□□□□□ -0.25
TOP3A-201ENST00000321105 TOMM22Q9NS69 142 aa13.49□□□□□ -0.25
TOP3A-201ENST00000321105 IFT57Q9NWB7 429 aa13.49□□□□□ -0.25
TOP3A-201ENST00000321105 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.49□□□□□ -0.25
TOP3A-201ENST00000321105 MAST1Q9Y2H9 1570 aa13.49□□□□□ -0.25
TOP3A-201ENST00000321105 CDC45O75419 566 aa13.49□□□□□ -0.25
TOP3A-201ENST00000321105 REC8O95072 547 aa13.49□□□□□ -0.25
TOP3A-201ENST00000321105 NEK4P51957 841 aa13.49□□□□□ -0.25
TOP3A-201ENST00000321105 FOSBP53539 338 aa13.49□□□□□ -0.25
TOP3A-201ENST00000321105 GNAI3P08754 354 aa13.48□□□□□ -0.25
TOP3A-201ENST00000321105 DNTTIP2Q5QJE6 756 aaKnown RBP13.48□□□□□ -0.25
TOP3A-201ENST00000321105 INTS3Q68E01 1043 aaKnown RBP13.48□□□□□ -0.25
TOP3A-201ENST00000321105 MEIS3Q99687 375 aa13.48□□□□□ -0.25
TOP3A-201ENST00000321105 SRCIN1Q9C0H9 1055 aa13.48□□□□□ -0.25
TOP3A-201ENST00000321105 TAF7Q15545 349 aaPredicted RBP13.48□□□□□ -0.25
TOP3A-201ENST00000321105 NAP1L5Q96NT1 182 aaPredicted RBP13.48□□□□□ -0.25
TOP3A-201ENST00000321105 POLR3AO14802 1390 aaPredicted RBP13.47□□□□□ -0.25
TOP3A-201ENST00000321105 GOLGA6L3A6NEY3 463 aa13.47□□□□□ -0.25
TOP3A-201ENST00000321105 TULP1O00294 542 aaPredicted RBP13.47□□□□□ -0.25
TOP3A-201ENST00000321105 TATP17735 454 aaPredicted RBP13.47□□□□□ -0.25
TOP3A-201ENST00000321105 MTHFSDQ2M296 383 aaKnown RBP13.47□□□□□ -0.25
TOP3A-201ENST00000321105 C16orf71Q8IYS4 520 aaPredicted RBP13.47□□□□□ -0.25
TOP3A-201ENST00000321105 PTPRTO14522 1441 aa13.47□□□□□ -0.25
TOP3A-201ENST00000321105 LRRIQ1Q96JM4 1722 aa13.47□□□□□ -0.25
TOP3A-201ENST00000321105 MAP3K19Q56UN5 1328 aa13.47□□□□□ -0.25
TOP3A-201ENST00000321105 CT47B1P0C2W7 299 aaPredicted RBP13.47□□□□□ -0.25
TOP3A-201ENST00000321105 TRIM35Q9UPQ4 493 aa13.47□□□□□ -0.25
TOP3A-201ENST00000321105 SLC39A6Q13433 755 aa13.46□□□□□ -0.25
TOP3A-201ENST00000321105 GCC1Q96CN9 775 aa13.46□□□□□ -0.25
TOP3A-201ENST00000321105 ORAI2Q96SN7 254 aa13.46□□□□□ -0.25
TOP3A-201ENST00000321105 CLASRPQ8N2M8 674 aaKnown RBP13.46□□□□□ -0.26
TOP3A-201ENST00000321105 EYA1Q99502 592 aa13.46□□□□□ -0.26
TOP3A-201ENST00000321105 CHMP5Q9NZZ3 219 aa13.45□□□□□ -0.26
TOP3A-201ENST00000321105 ZRSR1Q15695 479 aaKnown RBP13.45□□□□□ -0.26
TOP3A-201ENST00000321105 KRT28Q7Z3Y7 464 aa13.45□□□□□ -0.26
TOP3A-201ENST00000321105 LARP6Q9BRS8 491 aaKnown RBP13.45□□□□□ -0.26
TOP3A-201ENST00000321105 KDM4AO75164 1064 aa13.45□□□□□ -0.26
TOP3A-201ENST00000321105 CABP4P57796 275 aa13.45□□□□□ -0.26
TOP3A-201ENST00000321105 PIP4K2BP78356 416 aa13.45□□□□□ -0.26
TOP3A-201ENST00000321105 LRRFIP2Q9Y608 721 aaKnown RBP13.45□□□□□ -0.26
TOP3A-201ENST00000321105 VAMP4O75379 141 aa13.44□□□□□ -0.26
TOP3A-201ENST00000321105 RSPH6AQ9H0K4 717 aa13.44□□□□□ -0.26
TOP3A-201ENST00000321105 FLIIQ13045 1269 aa13.44□□□□□ -0.26
TOP3A-201ENST00000321105 DNAJC2Q99543 621 aaKnown RBP13.44□□□□□ -0.26
TOP3A-201ENST00000321105 UPF3BQ9BZI7 483 aaKnown RBP13.44□□□□□ -0.26
TOP3A-201ENST00000321105 HDAC5Q9UQL6 1122 aa13.44□□□□□ -0.26
TOP3A-201ENST00000321105 ISY1Q9ULR0 285 aaKnown RBP13.44□□□□□ -0.26
TOP3A-201ENST00000321105 PPP6R1Q9UPN7 881 aa13.44□□□□□ -0.26
TOP3A-201ENST00000321105 CDC42BPAQ5VT25 1732 aa13.43□□□□□ -0.26
TOP3A-201ENST00000321105 AAMPQ13685 434 aa13.43□□□□□ -0.26
TOP3A-201ENST00000321105 MCTP1Q6DN14 999 aa13.43□□□□□ -0.26
TOP3A-201ENST00000321105 LRRCC1Q9C099 1032 aa13.43□□□□□ -0.26
TOP3A-201ENST00000321105 BRPF3Q9ULD4 1205 aa13.43□□□□□ -0.26
TOP3A-201ENST00000321105 PI4KAP2A4QPH2 592 aa13.43□□□□□ -0.26
TOP3A-201ENST00000321105 PI4KAP1Q8N8J0 262 aa13.43□□□□□ -0.26
TOP3A-201ENST00000321105 ARHGEF5Q12774 1597 aa13.43□□□□□ -0.26
TOP3A-201ENST00000321105 CCT4P50991 539 aaKnown RBP13.43□□□□□ -0.26
TOP3A-201ENST00000321105 METP08581 1390 aa13.42□□□□□ -0.26
TOP3A-201ENST00000321105 PIK3C2GO75747 1445 aa13.42□□□□□ -0.26
TOP3A-201ENST00000321105 ALDH1L2Q3SY69 923 aa13.42□□□□□ -0.26
TOP3A-201ENST00000321105 G2E3Q7L622 706 aa13.42□□□□□ -0.26
TOP3A-201ENST00000321105 VPS37CA5D8V6 355 aaPredicted RBP13.41□□□□□ -0.26
TOP3A-201ENST00000321105 ADAMTS2O95450 1211 aa13.41□□□□□ -0.26
TOP3A-201ENST00000321105 APPP05067 770 aa13.41□□□□□ -0.26
TOP3A-201ENST00000321105 C8orf34Q49A92 452 aa13.41□□□□□ -0.26
TOP3A-201ENST00000321105 CWC27Q6UX04 472 aaKnown RBP13.41□□□□□ -0.26
TOP3A-201ENST00000321105 MYO5CQ9NQX4 1742 aa13.41□□□□□ -0.26
TOP3A-201ENST00000321105 NSD2O96028 1365 aa13.41□□□□□ -0.26
TOP3A-201ENST00000321105 ATP5J2-PTCD1G3V325 749 aa13.41□□□□□ -0.26
TOP3A-201ENST00000321105 L1TD1Q5T7N2 865 aaKnown RBP13.41□□□□□ -0.26
TOP3A-201ENST00000321105 ARID3AQ99856 593 aa13.41□□□□□ -0.26
TOP3A-201ENST00000321105 FSD1Q9BTV5 496 aa13.41□□□□□ -0.26
TOP3A-201ENST00000321105 PRDM15P57071 1507 aaPredicted RBP13.4□□□□□ -0.26
TOP3A-201ENST00000321105 CCDC27Q2M243 656 aa13.4□□□□□ -0.26
TOP3A-201ENST00000321105 KDM5CP41229 1560 aa13.4□□□□□ -0.26
TOP3A-201ENST00000321105 IL13P35225 146 aa13.4□□□□□ -0.26
TOP3A-201ENST00000321105 ANKRD24Q8TF21 1146 aa13.4□□□□□ -0.26
TOP3A-201ENST00000321105 ZCCHC11Q5TAX3 1644 aaKnown RBP13.4□□□□□ -0.26
TOP3A-201ENST00000321105 ABCC1P33527 1531 aa13.4□□□□□ -0.26
TOP3A-201ENST00000321105 ABCC11Q96J66 1382 aa13.4□□□□□ -0.26
TOP3A-201ENST00000321105 IL27Q8NEV9 243 aa13.4□□□□□ -0.26
TOP3A-201ENST00000321105 TBC1D2Q9BYX2 928 aa13.4□□□□□ -0.26
TOP3A-201ENST00000321105 KCNH5Q8NCM2 988 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms