RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 NRKQ7Z2Y5 1582 aa20.45■□□□□ 0.86
USH1C-202ENST00000318024 AATKQ6ZMQ8 1374 aa20.45■□□□□ 0.86
USH1C-202ENST00000318024 SLFN5Q08AF3 891 aa20.45■□□□□ 0.86
USH1C-202ENST00000318024 OVOS2A0A0J9YW53 1432 aa20.44■□□□□ 0.86
USH1C-202ENST00000318024 OVOS2Q6IE36 1432 aa20.44■□□□□ 0.86
USH1C-202ENST00000318024 PLEKHG5O94827 1062 aa20.43■□□□□ 0.86
USH1C-202ENST00000318024 GOLGA2Q08379 1002 aa20.43■□□□□ 0.86
USH1C-202ENST00000318024 MAP2P11137 1827 aaKnown RBP20.43■□□□□ 0.86
USH1C-202ENST00000318024 ATF3P18847 181 aa20.43■□□□□ 0.86
USH1C-202ENST00000318024 STRCP1A6NGW2 1772 aa20.42■□□□□ 0.86
USH1C-202ENST00000318024 ZNF335Q9H4Z2 1342 aaPredicted RBP20.42■□□□□ 0.86
USH1C-202ENST00000318024 STRCQ7RTU9 1775 aa20.41■□□□□ 0.86
USH1C-202ENST00000318024 HMOX1P09601 288 aa20.41■□□□□ 0.86
USH1C-202ENST00000318024 SPINK5Q9NQ38 1064 aaPredicted RBP20.41■□□□□ 0.86
USH1C-202ENST00000318024 DMRT2Q9Y5R5 561 aa20.41■□□□□ 0.86
USH1C-202ENST00000318024 IL13P35225 146 aa20.4■□□□□ 0.86
USH1C-202ENST00000318024 HSP90AB2PQ58FF8 381 aa20.39■□□□□ 0.86
USH1C-202ENST00000318024 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.39■□□□□ 0.86
USH1C-202ENST00000318024 PLEKHF1Q96S99 279 aa20.39■□□□□ 0.86
USH1C-202ENST00000318024 USP19O94966 1318 aa20.39■□□□□ 0.85
USH1C-202ENST00000318024 WWC1Q8IX03 1113 aa20.39■□□□□ 0.85
USH1C-202ENST00000318024 USP31Q70CQ4 1352 aa20.38■□□□□ 0.85
USH1C-202ENST00000318024 DDX17Q92841 729 aaKnown RBP20.38■□□□□ 0.85
USH1C-202ENST00000318024 LMOD2Q6P5Q4 547 aa20.38■□□□□ 0.85
USH1C-202ENST00000318024 MAP3K19Q56UN5 1328 aa20.37■□□□□ 0.85
USH1C-202ENST00000318024 C1orf167Q5SNV9 1468 aa20.37■□□□□ 0.85
USH1C-202ENST00000318024 FRAT2O75474 233 aaPredicted RBP20.36■□□□□ 0.85
USH1C-202ENST00000318024 PIK3C2AO00443 1686 aa20.36■□□□□ 0.85
USH1C-202ENST00000318024 PRKAR2BP31323 418 aa20.35■□□□□ 0.85
USH1C-202ENST00000318024 CDK12Q9NYV4 1490 aaPredicted RBP20.35■□□□□ 0.85
USH1C-202ENST00000318024 MAPK8IP3Q9UPT6 1336 aa20.35■□□□□ 0.85
USH1C-202ENST00000318024 EIF4A2Q14240 407 aaKnown RBP20.35■□□□□ 0.85
USH1C-202ENST00000318024 FCHSD2O94868 740 aa20.34■□□□□ 0.85
USH1C-202ENST00000318024 RSPH6AQ9H0K4 717 aa20.34■□□□□ 0.85
USH1C-202ENST00000318024 AMPHP49418 695 aa20.34■□□□□ 0.85
USH1C-202ENST00000318024 KRT28Q7Z3Y7 464 aa20.34■□□□□ 0.85
USH1C-202ENST00000318024 CADPS2Q86UW7 1296 aa20.34■□□□□ 0.85
USH1C-202ENST00000318024 DAXXQ9UER7 740 aaPredicted RBP20.34■□□□□ 0.85
USH1C-202ENST00000318024 TMPOP42166 694 aaKnown RBP20.33■□□□□ 0.84
USH1C-202ENST00000318024 PHACTR3Q96KR7 559 aa20.33■□□□□ 0.84
USH1C-202ENST00000318024 MSH6P52701 1360 aa20.32■□□□□ 0.84
USH1C-202ENST00000318024 IQSEC2Q5JU85 1478 aa20.32■□□□□ 0.84
USH1C-202ENST00000318024 RGS3P49796 1198 aa20.32■□□□□ 0.84
USH1C-202ENST00000318024 MST1RQ04912 1400 aa20.32■□□□□ 0.84
USH1C-202ENST00000318024 NGEFQ8N5V2 710 aa20.31■□□□□ 0.84
USH1C-202ENST00000318024 ZBTB7CA1YPR0 619 aa20.31■□□□□ 0.84
USH1C-202ENST00000318024 IGHDP01880 384 aa20.3■□□□□ 0.84
USH1C-202ENST00000318024 AEBP1Q8IUX7 1158 aa20.3■□□□□ 0.84
USH1C-202ENST00000318024 RIPK4P57078 832 aa20.3■□□□□ 0.84
USH1C-202ENST00000318024 PNNQ9H307 717 aaKnown RBP20.3■□□□□ 0.84
USH1C-202ENST00000318024 NCOA3Q9Y6Q9 1424 aa20.29■□□□□ 0.84
USH1C-202ENST00000318024 E9PSI1 815 aa20.29■□□□□ 0.84
USH1C-202ENST00000318024 BCAR3O75815 825 aa20.29■□□□□ 0.84
USH1C-202ENST00000318024 SULT6B1Q6IMI4 303 aa20.29■□□□□ 0.84
USH1C-202ENST00000318024 PHF23Q9BUL5 403 aaPredicted RBP20.29■□□□□ 0.84
USH1C-202ENST00000318024 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.29■□□□□ 0.84
USH1C-202ENST00000318024 LRRC7Q96NW7 1537 aa20.28■□□□□ 0.84
USH1C-202ENST00000318024 TRIM35Q9UPQ4 493 aa20.28■□□□□ 0.84
USH1C-202ENST00000318024 PEAK1Q9H792 1746 aa20.28■□□□□ 0.84
USH1C-202ENST00000318024 SBNO1A3KN83 1393 aa20.27■□□□□ 0.84
USH1C-202ENST00000318024 CCDC27Q2M243 656 aa20.27■□□□□ 0.84
USH1C-202ENST00000318024 LTV1Q96GA3 475 aaPredicted RBP20.27■□□□□ 0.84
USH1C-202ENST00000318024 FLT4P35916 1363 aa20.27■□□□□ 0.83
USH1C-202ENST00000318024 DCCP43146 1447 aa20.26■□□□□ 0.83
USH1C-202ENST00000318024 HOXC9P31274 260 aa20.26■□□□□ 0.83
USH1C-202ENST00000318024 PDE3AQ14432 1141 aa20.25■□□□□ 0.83
USH1C-202ENST00000318024 WDR63Q8IWG1 891 aa20.25■□□□□ 0.83
USH1C-202ENST00000318024 GCP02774 474 aa20.24■□□□□ 0.83
USH1C-202ENST00000318024 SEC24BO95487 1268 aa20.23■□□□□ 0.83
USH1C-202ENST00000318024 MARF1Q9Y4F3 1742 aaKnown RBP20.23■□□□□ 0.83
USH1C-202ENST00000318024 SLAIN2Q9P270 581 aa20.23■□□□□ 0.83
USH1C-202ENST00000318024 BRINP3Q76B58 766 aa20.22■□□□□ 0.83
USH1C-202ENST00000318024 EYA1Q99502 592 aa20.22■□□□□ 0.83
USH1C-202ENST00000318024 FAM43AQ8N2R8 423 aa20.22■□□□□ 0.83
USH1C-202ENST00000318024 XIRP1Q702N8 1843 aaKnown RBP20.21■□□□□ 0.83
USH1C-202ENST00000318024 NFE2L2Q16236 605 aa20.21■□□□□ 0.83
USH1C-202ENST00000318024 KCNH5Q8NCM2 988 aa20.21■□□□□ 0.83
USH1C-202ENST00000318024 THUMPD2Q9BTF0 503 aaKnown RBP20.21■□□□□ 0.83
USH1C-202ENST00000318024 TSR2Q969E8 191 aaKnown RBP20.2■□□□□ 0.82
USH1C-202ENST00000318024 NPHP3Q7Z494 1330 aa20.2■□□□□ 0.82
USH1C-202ENST00000318024 CLUAP1Q96AJ1 413 aa20.19■□□□□ 0.82
USH1C-202ENST00000318024 CABLES1Q8TDN4 633 aa20.19■□□□□ 0.82
USH1C-202ENST00000318024 ANTXR1Q9H6X2 564 aa20.19■□□□□ 0.82
USH1C-202ENST00000318024 NCBP3Q53F19 620 aaKnown RBP20.18■□□□□ 0.82
USH1C-202ENST00000318024 FAM83GA6ND36 823 aa20.18■□□□□ 0.82
USH1C-202ENST00000318024 ZC3H6P61129 1189 aaKnown RBP20.18■□□□□ 0.82
USH1C-202ENST00000318024 IP6K1Q92551 441 aa20.18■□□□□ 0.82
USH1C-202ENST00000318024 USHBP1Q8N6Y0 703 aa20.17■□□□□ 0.82
USH1C-202ENST00000318024 KIF1AQ12756 1690 aa20.17■□□□□ 0.82
USH1C-202ENST00000318024 DCTN1Q14203 1278 aa20.17■□□□□ 0.82
USH1C-202ENST00000318024 MYH16Q9H6N6 1097 aa20.16■□□□□ 0.82
USH1C-202ENST00000318024 NFAT5O94916 1531 aa20.16■□□□□ 0.82
USH1C-202ENST00000318024 ARHGEF25Q86VW2 580 aa20.15■□□□□ 0.82
USH1C-202ENST00000318024 TRPM3Q9HCF6 1732 aaPredicted RBP20.15■□□□□ 0.82
USH1C-202ENST00000318024 IGSF1Q8N6C5 1336 aa20.14■□□□□ 0.82
USH1C-202ENST00000318024 USP54Q70EL1 1684 aa20.14■□□□□ 0.81
USH1C-202ENST00000318024 PANK1Q8TE04 598 aa20.14■□□□□ 0.81
USH1C-202ENST00000318024 AXIN2Q9Y2T1 843 aa20.14■□□□□ 0.81
USH1C-202ENST00000318024 ARHGEF10O15013 1369 aa20.13■□□□□ 0.81
USH1C-202ENST00000318024 KIF24Q5T7B8 1368 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms