RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 SOX12O15370 315 aa8.47□□□□□ -1.05
USP47-201ENST00000305481 AEBP1Q8IUX7 1158 aa8.47□□□□□ -1.05
USP47-201ENST00000305481 THUMPD2Q9BTF0 503 aaKnown RBP8.47□□□□□ -1.05
USP47-201ENST00000305481 MAP3K19Q56UN5 1328 aa8.47□□□□□ -1.05
USP47-201ENST00000305481 COG6Q9Y2V7 657 aa8.46□□□□□ -1.05
USP47-201ENST00000305481 CT47B1P0C2W7 299 aaPredicted RBP8.46□□□□□ -1.06
USP47-201ENST00000305481 MARF1Q9Y4F3 1742 aaKnown RBP8.46□□□□□ -1.06
USP47-201ENST00000305481 RGPD1P0DJD0 1748 aa8.46□□□□□ -1.06
USP47-201ENST00000305481 CANXP27824 592 aaKnown RBP8.45□□□□□ -1.06
USP47-201ENST00000305481 SULT6B1Q6IMI4 303 aa8.45□□□□□ -1.06
USP47-201ENST00000305481 DLG5Q8TDM6 1919 aa8.45□□□□□ -1.06
USP47-201ENST00000305481 NEFMP07197 916 aa8.45□□□□□ -1.06
USP47-201ENST00000305481 CENPQQ7L2Z9 268 aaPredicted RBP8.45□□□□□ -1.06
USP47-201ENST00000305481 SSH1Q8WYL5 1049 aa8.45□□□□□ -1.06
USP47-201ENST00000305481 ADGRL3Q9HAR2 1447 aa8.45□□□□□ -1.06
USP47-201ENST00000305481 NUTM2GQ5VZR2 741 aa8.45□□□□□ -1.06
USP47-201ENST00000305481 FAM83GA6ND36 823 aa8.44□□□□□ -1.06
USP47-201ENST00000305481 TCERG1O14776 1098 aaKnown RBP8.44□□□□□ -1.06
USP47-201ENST00000305481 ZNF853P0CG23 659 aa8.44□□□□□ -1.06
USP47-201ENST00000305481 NLRP6P59044 892 aa8.44□□□□□ -1.06
USP47-201ENST00000305481 IGHDP01880 384 aa8.44□□□□□ -1.06
USP47-201ENST00000305481 CLUAP1Q96AJ1 413 aa8.44□□□□□ -1.06
USP47-201ENST00000305481 PHF8Q9UPP1 1060 aa8.44□□□□□ -1.06
USP47-201ENST00000305481 SBNO1A3KN83 1393 aa8.44□□□□□ -1.06
USP47-201ENST00000305481 DCTN1Q14203 1278 aa8.43□□□□□ -1.06
USP47-201ENST00000305481 SMC4Q9NTJ3 1288 aa8.43□□□□□ -1.06
USP47-201ENST00000305481 LAS1LQ9Y4W2 734 aaKnown RBP8.43□□□□□ -1.06
USP47-201ENST00000305481 USP54Q70EL1 1684 aa8.43□□□□□ -1.06
USP47-201ENST00000305481 ABTB2Q8N961 1025 aa8.43□□□□□ -1.06
USP47-201ENST00000305481 IFT57Q9NWB7 429 aa8.43□□□□□ -1.06
USP47-201ENST00000305481 FLT4P35916 1363 aa8.43□□□□□ -1.06
USP47-201ENST00000305481 MSH5O43196 834 aa8.42□□□□□ -1.06
USP47-201ENST00000305481 MBIPQ9NS73 344 aa8.42□□□□□ -1.06
USP47-201ENST00000305481 NWD1Q149M9 1564 aa8.42□□□□□ -1.06
USP47-201ENST00000305481 TRIM27P14373 513 aa8.42□□□□□ -1.06
USP47-201ENST00000305481 ZKSCAN2Q63HK3 967 aa8.42□□□□□ -1.06
USP47-201ENST00000305481 TSPYL6Q8N831 410 aa8.42□□□□□ -1.06
USP47-201ENST00000305481 PAK3O75914 559 aaPredicted RBP8.42□□□□□ -1.06
USP47-201ENST00000305481 MS4A1P11836 297 aa8.42□□□□□ -1.06
USP47-201ENST00000305481 ESCO1Q5FWF5 840 aa8.42□□□□□ -1.06
USP47-201ENST00000305481 NOB1Q9ULX3 412 aaKnown RBP8.42□□□□□ -1.06
USP47-201ENST00000305481 VAMP4O75379 141 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 GNAI1P63096 354 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 CFAP44Q96MT7 982 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 EYA1Q99502 592 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 PCDHB15Q9Y5E8 787 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 ARHGEF10O15013 1369 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 KDRP35968 1356 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 AMPHP49418 695 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 CALD1Q05682 793 aaKnown RBP8.41□□□□□ -1.06
USP47-201ENST00000305481 DZIP1LQ8IYY4 767 aaKnown RBP8.41□□□□□ -1.06
USP47-201ENST00000305481 ORAI2Q96SN7 254 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 PDE4AP27815 886 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 HOXC9P31274 260 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 LMOD3Q0VAK6 560 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 MVPQ14764 893 aaKnown RBP8.41□□□□□ -1.06
USP47-201ENST00000305481 ALDH1L2Q3SY69 923 aa8.41□□□□□ -1.06
USP47-201ENST00000305481 ATF7IPQ6VMQ6 1270 aa8.4□□□□□ -1.06
USP47-201ENST00000305481 IGSF1Q8N6C5 1336 aa8.4□□□□□ -1.06
USP47-201ENST00000305481 FOXO3O43524 673 aa8.4□□□□□ -1.06
USP47-201ENST00000305481 C8orf58Q8NAV2 365 aa8.4□□□□□ -1.06
USP47-201ENST00000305481 BACH2Q9BYV9 841 aa8.4□□□□□ -1.06
USP47-201ENST00000305481 BRPF1P55201 1214 aaPredicted RBP8.4□□□□□ -1.07
USP47-201ENST00000305481 MCM10Q7L590 875 aa8.4□□□□□ -1.07
USP47-201ENST00000305481 KIF24Q5T7B8 1368 aa8.39□□□□□ -1.07
USP47-201ENST00000305481 ELL2O00472 640 aaPredicted RBP8.39□□□□□ -1.07
USP47-201ENST00000305481 PSME1Q06323 249 aa8.39□□□□□ -1.07
USP47-201ENST00000305481 AAMPQ13685 434 aa8.39□□□□□ -1.07
USP47-201ENST00000305481 MTHFSDQ2M296 383 aaKnown RBP8.39□□□□□ -1.07
USP47-201ENST00000305481 C14orf37Q86TY3 774 aa8.39□□□□□ -1.07
USP47-201ENST00000305481 PROSER2Q86WR7 435 aaPredicted RBP8.39□□□□□ -1.07
USP47-201ENST00000305481 FTSJ3Q8IY81 847 aaKnown RBP8.39□□□□□ -1.07
USP47-201ENST00000305481 ZNF428Q96B54 188 aa8.39□□□□□ -1.07
USP47-201ENST00000305481 NFAT5O94916 1531 aa8.38□□□□□ -1.07
USP47-201ENST00000305481 MRPL50Q8N5N7 158 aaKnown RBP8.38□□□□□ -1.07
USP47-201ENST00000305481 CHL1O00533 1208 aa8.38□□□□□ -1.07
USP47-201ENST00000305481 CRB1P82279 1406 aa8.38□□□□□ -1.07
USP47-201ENST00000305481 XPCQ01831 940 aaPredicted RBP8.38□□□□□ -1.07
USP47-201ENST00000305481 TWISTNBQ3B726 338 aaPredicted RBP8.38□□□□□ -1.07
USP47-201ENST00000305481 TMEM57Q8N5G2 664 aa8.38□□□□□ -1.07
USP47-201ENST00000305481 KIF16BQ96L93 1317 aa8.38□□□□□ -1.07
USP47-201ENST00000305481 KRT24Q2M2I5 525 aa8.37□□□□□ -1.07
USP47-201ENST00000305481 STRCP1A6NGW2 1772 aa8.37□□□□□ -1.07
USP47-201ENST00000305481 IPO8O15397 1037 aaKnown RBP8.37□□□□□ -1.07
USP47-201ENST00000305481 LTN1O94822 1766 aa8.37□□□□□ -1.07
USP47-201ENST00000305481 PLEKHG5O94827 1062 aa8.37□□□□□ -1.07
USP47-201ENST00000305481 RGS3P49796 1198 aa8.36□□□□□ -1.07
USP47-201ENST00000305481 ITPRIPQ8IWB1 547 aa8.36□□□□□ -1.07
USP47-201ENST00000305481 LTV1Q96GA3 475 aaPredicted RBP8.36□□□□□ -1.07
USP47-201ENST00000305481 C19orf44Q9H6X5 657 aa8.36□□□□□ -1.07
USP47-201ENST00000305481 C1orf167Q5SNV9 1468 aa8.36□□□□□ -1.07
USP47-201ENST00000305481 RTL1A6NKG5 1358 aa8.36□□□□□ -1.07
USP47-201ENST00000305481 IP6K1Q92551 441 aa8.36□□□□□ -1.07
USP47-201ENST00000305481 ZBTB40Q9NUA8 1239 aa8.36□□□□□ -1.07
USP47-201ENST00000305481 DDX19BQ9UMR2 479 aa8.36□□□□□ -1.07
USP47-201ENST00000305481 HSPA2P54652 639 aa8.36□□□□□ -1.07
USP47-201ENST00000305481 ARHGAP45Q92619 1136 aa8.35□□□□□ -1.07
USP47-201ENST00000305481 MIS18AQ9NYP9 233 aa8.35□□□□□ -1.07
USP47-201ENST00000305481 TRPM3Q9HCF6 1732 aaPredicted RBP8.35□□□□□ -1.07
USP47-201ENST00000305481 TMEM94Q12767 1356 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms