RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 RLBP1P12271 317 aa16.18■□□□□ 0.18
HPS3-201ENST00000296051 H3BQV1 296 aa16.17■□□□□ 0.18
HPS3-201ENST00000296051 IFFO2Q5TF58 517 aa16.17■□□□□ 0.18
HPS3-201ENST00000296051 IQGAP2Q13576 1575 aa16.17■□□□□ 0.18
HPS3-201ENST00000296051 CREBRFQ8IUR6 639 aa16.17■□□□□ 0.18
HPS3-201ENST00000296051 GCC1Q96CN9 775 aa16.17■□□□□ 0.18
HPS3-201ENST00000296051 PHF8Q9UPP1 1060 aa16.17■□□□□ 0.18
HPS3-201ENST00000296051 TMPOP42166 694 aaKnown RBP16.16■□□□□ 0.18
HPS3-201ENST00000296051 PEG3Q9GZU2 1588 aa16.16■□□□□ 0.18
HPS3-201ENST00000296051 UBTFL1P0CB47 393 aaPredicted RBP16.16■□□□□ 0.18
HPS3-201ENST00000296051 HDGFL1Q5TGJ6 251 aa16.16■□□□□ 0.18
HPS3-201ENST00000296051 SYNE3Q6ZMZ3 975 aa16.16■□□□□ 0.18
HPS3-201ENST00000296051 TSPY26PQ9H489 355 aa16.16■□□□□ 0.18
HPS3-201ENST00000296051 RNF123Q5XPI4 1314 aa16.16■□□□□ 0.18
HPS3-201ENST00000296051 SF3A1Q15459 793 aaKnown RBP16.16■□□□□ 0.18
HPS3-201ENST00000296051 CCAR2Q8N163 923 aaKnown RBP16.16■□□□□ 0.18
HPS3-201ENST00000296051 MAGI1Q96QZ7 1491 aaPredicted RBP16.16■□□□□ 0.18
HPS3-201ENST00000296051 HTATSF1O43719 755 aaKnown RBP16.16■□□□□ 0.18
HPS3-201ENST00000296051 MYL6BP14649 208 aa16.16■□□□□ 0.18
HPS3-201ENST00000296051 CIZ1Q9ULV3 898 aaPredicted RBP16.15■□□□□ 0.18
HPS3-201ENST00000296051 SMARCA5O60264 1052 aaPredicted RBP16.15■□□□□ 0.18
HPS3-201ENST00000296051 UPF3BQ9BZI7 483 aaKnown RBP16.15■□□□□ 0.18
HPS3-201ENST00000296051 MBD3O95983 291 aa16.15■□□□□ 0.18
HPS3-201ENST00000296051 MTMR7Q9Y216 660 aa16.15■□□□□ 0.18
HPS3-201ENST00000296051 MAP4K4O95819 1239 aaPredicted RBP16.14■□□□□ 0.17
HPS3-201ENST00000296051 WASHC4Q2M389 1173 aa16.14■□□□□ 0.17
HPS3-201ENST00000296051 MAP7D2Q96T17 732 aa16.14■□□□□ 0.17
HPS3-201ENST00000296051 CLCN1P35523 988 aa16.14■□□□□ 0.17
HPS3-201ENST00000296051 FAM184AQ8NB25 1140 aa16.14■□□□□ 0.17
HPS3-201ENST00000296051 GDPD2Q9HCC8 539 aa16.14■□□□□ 0.17
HPS3-201ENST00000296051 RBM27Q9P2N5 1060 aaKnown RBP16.14■□□□□ 0.17
HPS3-201ENST00000296051 CCDC30Q5VVM6 783 aa16.13■□□□□ 0.17
HPS3-201ENST00000296051 TOM1O60784 492 aa16.13■□□□□ 0.17
HPS3-201ENST00000296051 CCDC34Q96HJ3 373 aa16.13■□□□□ 0.17
HPS3-201ENST00000296051 PER1O15534 1290 aaPredicted RBP16.13■□□□□ 0.17
HPS3-201ENST00000296051 TRDNQ13061 729 aa16.12■□□□□ 0.17
HPS3-201ENST00000296051 HECW1Q76N89 1606 aa16.12■□□□□ 0.17
HPS3-201ENST00000296051 DCTN1Q14203 1278 aa16.12■□□□□ 0.17
HPS3-201ENST00000296051 TCEAL9Q9UHQ7 104 aa16.12■□□□□ 0.17
HPS3-201ENST00000296051 DENND4BO75064 1496 aaPredicted RBP16.12■□□□□ 0.17
HPS3-201ENST00000296051 NSD3Q9BZ95 1437 aa16.12■□□□□ 0.17
HPS3-201ENST00000296051 ZKSCAN1P17029 563 aaPredicted RBP16.12■□□□□ 0.17
HPS3-201ENST00000296051 CPLX2Q6PUV4 134 aaKnown RBP16.12■□□□□ 0.17
HPS3-201ENST00000296051 KCNH5Q8NCM2 988 aa16.11■□□□□ 0.17
HPS3-201ENST00000296051 CADPS2Q86UW7 1296 aa16.11■□□□□ 0.17
HPS3-201ENST00000296051 KIF3AQ9Y496 699 aa16.11■□□□□ 0.17
HPS3-201ENST00000296051 SLC4A2P04920 1241 aa16.11■□□□□ 0.17
HPS3-201ENST00000296051 NINLQ9Y2I6 1382 aa16.11■□□□□ 0.17
HPS3-201ENST00000296051 SURF6O75683 361 aaKnown RBP16.1■□□□□ 0.17
HPS3-201ENST00000296051 RUFY2Q8WXA3 655 aa16.1■□□□□ 0.17
HPS3-201ENST00000296051 TRIM5Q9C035 493 aa16.1■□□□□ 0.17
HPS3-201ENST00000296051 PARD3Q8TEW0 1356 aa16.1■□□□□ 0.17
HPS3-201ENST00000296051 FBLN1P23142 703 aa16.1■□□□□ 0.17
HPS3-201ENST00000296051 MPRIPQ6WCQ1 1025 aa16.1■□□□□ 0.17
HPS3-201ENST00000296051 LARP6Q9BRS8 491 aaKnown RBP16.1■□□□□ 0.17
HPS3-201ENST00000296051 CNNM1Q9NRU3 951 aa16.1■□□□□ 0.17
HPS3-201ENST00000296051 EXOC6BQ9Y2D4 811 aa16.1■□□□□ 0.17
HPS3-201ENST00000296051 ERC2O15083 957 aa16.09■□□□□ 0.17
HPS3-201ENST00000296051 USHBP1Q8N6Y0 703 aa16.09■□□□□ 0.17
HPS3-201ENST00000296051 HSP90AB4PQ58FF6 505 aa16.09■□□□□ 0.17
HPS3-201ENST00000296051 TBC1D9Q6ZT07 1266 aa16.09■□□□□ 0.17
HPS3-201ENST00000296051 BAG4O95429 457 aaKnown RBP16.09■□□□□ 0.17
HPS3-201ENST00000296051 CCDC85AQ96PX6 553 aaPredicted RBP16.09■□□□□ 0.17
HPS3-201ENST00000296051 IL1RAPL2Q9NP60 686 aa16.09■□□□□ 0.17
HPS3-201ENST00000296051 CPLX1O14810 134 aa16.08■□□□□ 0.17
HPS3-201ENST00000296051 CEBPZQ03701 1054 aaKnown RBP16.08■□□□□ 0.17
HPS3-201ENST00000296051 KRT28Q7Z3Y7 464 aa16.08■□□□□ 0.17
HPS3-201ENST00000296051 CAMSAP2Q08AD1 1489 aa16.08■□□□□ 0.16
HPS3-201ENST00000296051 CBX1P83916 185 aa16.08■□□□□ 0.16
HPS3-201ENST00000296051 MAPK8IP2Q13387 824 aaPredicted RBP16.08■□□□□ 0.16
HPS3-201ENST00000296051 CHRNA2Q15822 529 aa16.08■□□□□ 0.16
HPS3-201ENST00000296051 TESK2Q96S53 571 aa16.08■□□□□ 0.16
HPS3-201ENST00000296051 ZHX1Q9UKY1 873 aaPredicted RBP16.08■□□□□ 0.16
HPS3-201ENST00000296051 HOMER1Q86YM7 354 aa16.08■□□□□ 0.16
HPS3-201ENST00000296051 SASS6Q6UVJ0 657 aa16.07■□□□□ 0.16
HPS3-201ENST00000296051 IKQ13123 557 aaPredicted RBP16.07■□□□□ 0.16
HPS3-201ENST00000296051 MIS18AQ9NYP9 233 aa16.07■□□□□ 0.16
HPS3-201ENST00000296051 PDE4CQ08493 712 aa16.07■□□□□ 0.16
HPS3-201ENST00000296051 ATAD2Q6PL18 1390 aa16.07■□□□□ 0.16
HPS3-201ENST00000296051 KDM2BQ8NHM5 1336 aa16.06■□□□□ 0.16
HPS3-201ENST00000296051 NFXL1Q6ZNB6 911 aa16.06■□□□□ 0.16
HPS3-201ENST00000296051 MTERF4Q7Z6M4 381 aaKnown RBP16.06■□□□□ 0.16
HPS3-201ENST00000296051 CLASRPQ8N2M8 674 aaKnown RBP16.06■□□□□ 0.16
HPS3-201ENST00000296051 ADGRF5Q8IZF2 1346 aa16.06■□□□□ 0.16
HPS3-201ENST00000296051 NME9Q86XW9 330 aa16.06■□□□□ 0.16
HPS3-201ENST00000296051 FMNL2Q96PY5 1086 aa16.06■□□□□ 0.16
HPS3-201ENST00000296051 FANCAO15360 1455 aa16.06■□□□□ 0.16
HPS3-201ENST00000296051 PDCL3Q9H2J4 239 aa16.06■□□□□ 0.16
HPS3-201ENST00000296051 TPM4P67936 248 aa16.06■□□□□ 0.16
HPS3-201ENST00000296051 CCAR1Q8IX12 1150 aaKnown RBP16.06■□□□□ 0.16
HPS3-201ENST00000296051 MPHOSPH8Q99549 860 aa16.06■□□□□ 0.16
HPS3-201ENST00000296051 CCDC141Q6ZP82 1450 aa16.05■□□□□ 0.16
HPS3-201ENST00000296051 TPD52L1Q16890 204 aaPredicted RBP16.05■□□□□ 0.16
HPS3-201ENST00000296051 BTBD11A6QL63 1104 aa16.05■□□□□ 0.16
HPS3-201ENST00000296051 EXOC5O00471 708 aa16.05■□□□□ 0.16
HPS3-201ENST00000296051 TSHZ3Q63HK5 1081 aa16.05■□□□□ 0.16
HPS3-201ENST00000296051 USP25Q9UHP3 1055 aa16.05■□□□□ 0.16
HPS3-201ENST00000296051 ZNF830Q96NB3 372 aaPredicted RBP16.04■□□□□ 0.16
HPS3-201ENST00000296051 HMGN5P82970 282 aaKnown RBP16.04■□□□□ 0.16
HPS3-201ENST00000296051 FERMT3Q86UX7 667 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms