RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 RNF214Q8ND24 703 aa11.77□□□□□ -0.52
COL6A3-201ENST00000295550 KDM5AP29375 1690 aaKnown RBP11.77□□□□□ -0.52
COL6A3-201ENST00000295550 HSP90AB4PQ58FF6 505 aa11.77□□□□□ -0.53
COL6A3-201ENST00000295550 CAVIN1Q6NZI2 390 aaKnown RBP11.77□□□□□ -0.53
COL6A3-201ENST00000295550 EXOSC9Q06265 439 aaKnown RBP11.77□□□□□ -0.53
COL6A3-201ENST00000295550 LETM1O95202 739 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-201ENST00000295550 NOL10Q9BSC4 688 aaKnown RBP11.77□□□□□ -0.53
COL6A3-201ENST00000295550 RAD21O60216 631 aa11.77□□□□□ -0.53
COL6A3-201ENST00000295550 ENOX2Q16206 610 aaKnown RBP11.77□□□□□ -0.53
COL6A3-201ENST00000295550 ATF7IPQ6VMQ6 1270 aa11.77□□□□□ -0.53
COL6A3-201ENST00000295550 ZNF428Q96B54 188 aa11.77□□□□□ -0.53
COL6A3-201ENST00000295550 LTV1Q96GA3 475 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-201ENST00000295550 FKBP5Q13451 457 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-201ENST00000295550 ERC2O15083 957 aa11.76□□□□□ -0.53
COL6A3-201ENST00000295550 UQCRHLA0A096LP55 91 aa11.76□□□□□ -0.53
COL6A3-201ENST00000295550 UQCRHP07919 91 aa11.76□□□□□ -0.53
COL6A3-201ENST00000295550 PRKAR2BP31323 418 aa11.76□□□□□ -0.53
COL6A3-201ENST00000295550 TSR2Q969E8 191 aaKnown RBP11.76□□□□□ -0.53
COL6A3-201ENST00000295550 ERLIN2O94905 339 aa11.76□□□□□ -0.53
COL6A3-201ENST00000295550 USP8P40818 1118 aa11.76□□□□□ -0.53
COL6A3-201ENST00000295550 OSCARQ8IYS5 282 aa11.76□□□□□ -0.53
COL6A3-201ENST00000295550 PRKCSHP14314 528 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-201ENST00000295550 TRDNQ13061 729 aa11.76□□□□□ -0.53
COL6A3-201ENST00000295550 TSPYL4Q9UJ04 414 aa11.76□□□□□ -0.53
COL6A3-201ENST00000295550 C9orf78Q9NZ63 289 aaPredicted RBP11.76□□□□□ -0.53
COL6A3-201ENST00000295550 ZFYVE27Q5T4F4 411 aa11.75□□□□□ -0.53
COL6A3-201ENST00000295550 ADGRL2O95490 1459 aa11.75□□□□□ -0.53
COL6A3-201ENST00000295550 IFIT2P09913 472 aaKnown RBP11.75□□□□□ -0.53
COL6A3-201ENST00000295550 KRI1Q8N9T8 703 aaKnown RBP11.75□□□□□ -0.53
COL6A3-201ENST00000295550 KINO60870 393 aaKnown RBP11.75□□□□□ -0.53
COL6A3-201ENST00000295550 GTF2E1P29083 439 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-201ENST00000295550 NEXNQ0ZGT2 675 aa11.75□□□□□ -0.53
COL6A3-201ENST00000295550 CIZ1Q9ULV3 898 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-201ENST00000295550 ERICH4A6NGS2 130 aa11.75□□□□□ -0.53
COL6A3-201ENST00000295550 DHX16O60231 1041 aaKnown RBP11.75□□□□□ -0.53
COL6A3-201ENST00000295550 MBD3O95983 291 aa11.75□□□□□ -0.53
COL6A3-201ENST00000295550 MCM2P49736 904 aa11.75□□□□□ -0.53
COL6A3-201ENST00000295550 MYO5CQ9NQX4 1742 aa11.74□□□□□ -0.53
COL6A3-201ENST00000295550 ZMYM4Q5VZL5 1548 aa11.74□□□□□ -0.53
COL6A3-201ENST00000295550 TEFQ10587 303 aa11.74□□□□□ -0.53
COL6A3-201ENST00000295550 PZPP20742 1482 aa11.74□□□□□ -0.53
COL6A3-201ENST00000295550 SMARCE1Q969G3 411 aa11.74□□□□□ -0.53
COL6A3-201ENST00000295550 CENPHQ9H3R5 247 aa11.74□□□□□ -0.53
COL6A3-201ENST00000295550 SDF4Q9BRK5 362 aa11.74□□□□□ -0.53
COL6A3-201ENST00000295550 COL17A1Q9UMD9 1497 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-201ENST00000295550 NUTM2FA1L443 756 aa11.73□□□□□ -0.53
COL6A3-201ENST00000295550 PRAM1Q96QH2 718 aa11.73□□□□□ -0.53
COL6A3-201ENST00000295550 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-201ENST00000295550 SLC12A5Q9H2X9 1139 aa11.73□□□□□ -0.53
COL6A3-201ENST00000295550 SLC52A1Q9NWF4 448 aa11.73□□□□□ -0.53
COL6A3-201ENST00000295550 SPC24Q8NBT2 197 aa11.73□□□□□ -0.53
COL6A3-201ENST00000295550 UHRF1BP1Q6BDS2 1440 aa11.73□□□□□ -0.53
COL6A3-201ENST00000295550 EIF3JO75822 258 aaKnown RBP11.73□□□□□ -0.53
COL6A3-201ENST00000295550 IL27Q8NEV9 243 aa11.73□□□□□ -0.53
COL6A3-201ENST00000295550 TWISTNBQ3B726 338 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-201ENST00000295550 CTDP1Q9Y5B0 961 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-201ENST00000295550 BRMS1Q9HCU9 246 aa11.73□□□□□ -0.53
COL6A3-201ENST00000295550 GNAI3P08754 354 aa11.72□□□□□ -0.53
COL6A3-201ENST00000295550 CHD1LQ86WJ1 897 aa11.72□□□□□ -0.53
COL6A3-201ENST00000295550 KDM5BQ9UGL1 1544 aa11.72□□□□□ -0.53
COL6A3-201ENST00000295550 ERICH2A1L162 156 aa11.72□□□□□ -0.53
COL6A3-201ENST00000295550 SEPT7Q16181 437 aaKnown RBP11.72□□□□□ -0.53
COL6A3-201ENST00000295550 CWC22Q9HCG8 908 aaKnown RBP11.72□□□□□ -0.53
COL6A3-201ENST00000295550 K7ELQ4 463 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-201ENST00000295550 UBTFL1P0CB47 393 aaPredicted RBP11.72□□□□□ -0.53
COL6A3-201ENST00000295550 C20orf194Q5TEA3 1177 aa11.72□□□□□ -0.53
COL6A3-201ENST00000295550 DDX58O95786 925 aaKnown RBP11.71□□□□□ -0.53
COL6A3-201ENST00000295550 CCDC112Q8NEF3 446 aa11.71□□□□□ -0.53
COL6A3-201ENST00000295550 FANCAO15360 1455 aa11.71□□□□□ -0.53
COL6A3-201ENST00000295550 ERLIN1O75477 346 aa11.71□□□□□ -0.53
COL6A3-201ENST00000295550 VPS37DQ86XT2 251 aa11.71□□□□□ -0.53
COL6A3-201ENST00000295550 DHX37Q8IY37 1157 aaKnown RBP11.71□□□□□ -0.54
COL6A3-201ENST00000295550 RTEL1-TNFRSF6BF6WH68 1400 aa11.71□□□□□ -0.54
COL6A3-201ENST00000295550 EZRP15311 586 aaKnown RBP11.71□□□□□ -0.54
COL6A3-201ENST00000295550 FCHSD2O94868 740 aa11.71□□□□□ -0.54
COL6A3-201ENST00000295550 CNTROBQ8N137 903 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 GIMAP7Q8NHV1 300 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 GAS2L2Q8NHY3 880 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 MAGEC2Q9UBF1 373 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-201ENST00000295550 CCT4P50991 539 aaKnown RBP11.7□□□□□ -0.54
COL6A3-201ENST00000295550 FAM193AP78312 1265 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 IQCEQ6IPM2 695 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 DHX29Q7Z478 1369 aaKnown RBP11.7□□□□□ -0.54
COL6A3-201ENST00000295550 NEFHP12036 1026 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 CLASRPQ8N2M8 674 aaKnown RBP11.7□□□□□ -0.54
COL6A3-201ENST00000295550 DUSP27Q5VZP5 1158 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 KDM5CP41229 1560 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 RARSP54136 660 aaKnown RBP11.7□□□□□ -0.54
COL6A3-201ENST00000295550 CCDC30Q5VVM6 783 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 TTC5Q8N0Z6 440 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 CDK19Q9BWU1 502 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 ARHGEF5Q12774 1597 aa11.7□□□□□ -0.54
COL6A3-201ENST00000295550 POLR1AO95602 1720 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-201ENST00000295550 G3BP1Q13283 466 aaKnown RBP eCLIP11.69□□□□□ -0.54
COL6A3-201ENST00000295550 ALDH1L2Q3SY69 923 aa11.69□□□□□ -0.54
COL6A3-201ENST00000295550 CCDC27Q2M243 656 aa11.69□□□□□ -0.54
COL6A3-201ENST00000295550 ATP10BO94823 1461 aa11.69□□□□□ -0.54
COL6A3-201ENST00000295550 C1orf115Q9H7X2 142 aa11.69□□□□□ -0.54
COL6A3-201ENST00000295550 EIF2S2P20042 333 aaKnown RBP11.69□□□□□ -0.54
COL6A3-201ENST00000295550 ANKRD18AQ8IVF6 992 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms