RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 U2AF1Q01081 240 aaKnown RBP eCLIP21.98■■□□□ 1.11
CPSF4-201ENST00000292476 ZRANB1Q9UGI0 708 aa21.98■■□□□ 1.11
CPSF4-201ENST00000292476 SBNO1A3KN83 1393 aa21.97■■□□□ 1.11
CPSF4-201ENST00000292476 PPM1GO15355 546 aaPredicted RBP21.96■■□□□ 1.11
CPSF4-201ENST00000292476 ADAMTS2O95450 1211 aa21.96■■□□□ 1.11
CPSF4-201ENST00000292476 RGS17Q9UGC6 210 aaPredicted RBP21.96■■□□□ 1.11
CPSF4-201ENST00000292476 MAP2P11137 1827 aaKnown RBP21.96■■□□□ 1.11
CPSF4-201ENST00000292476 PAK3O75914 559 aaPredicted RBP21.95■■□□□ 1.1
CPSF4-201ENST00000292476 NLRP6P59044 892 aa21.95■■□□□ 1.1
CPSF4-201ENST00000292476 ABTB2Q8N961 1025 aa21.95■■□□□ 1.1
CPSF4-201ENST00000292476 U2SURPO15042 1029 aaKnown RBP21.94■■□□□ 1.1
CPSF4-201ENST00000292476 ILDR2Q71H61 639 aa21.94■■□□□ 1.1
CPSF4-201ENST00000292476 CCDC146Q8IYE0 955 aa21.94■■□□□ 1.1
CPSF4-201ENST00000292476 APAF1O14727 1248 aa21.93■■□□□ 1.1
CPSF4-201ENST00000292476 SALL2Q9Y467 1007 aaPredicted RBP21.93■■□□□ 1.1
CPSF4-201ENST00000292476 C8orf37Q96NL8 207 aa21.92■■□□□ 1.1
CPSF4-201ENST00000292476 EMILIN1Q9Y6C2 1016 aa21.92■■□□□ 1.1
CPSF4-201ENST00000292476 USP54Q70EL1 1684 aa21.92■■□□□ 1.1
CPSF4-201ENST00000292476 ALS2Q96Q42 1657 aa21.92■■□□□ 1.1
CPSF4-201ENST00000292476 KIF24Q5T7B8 1368 aa21.92■■□□□ 1.1
CPSF4-201ENST00000292476 FCHSD2O94868 740 aa21.91■■□□□ 1.1
CPSF4-201ENST00000292476 NEFMP07197 916 aa21.91■■□□□ 1.1
CPSF4-201ENST00000292476 CABLES1Q8TDN4 633 aa21.91■■□□□ 1.1
CPSF4-201ENST00000292476 ARHGEF10O15013 1369 aa21.91■■□□□ 1.1
CPSF4-201ENST00000292476 PIK3C2AO00443 1686 aa21.9■■□□□ 1.1
CPSF4-201ENST00000292476 RRS1Q15050 365 aaKnown RBP21.89■■□□□ 1.1
CPSF4-201ENST00000292476 MAPK8IP3Q9UPT6 1336 aa21.89■■□□□ 1.09
CPSF4-201ENST00000292476 GOLGA2Q08379 1002 aa21.88■■□□□ 1.09
CPSF4-201ENST00000292476 ZNF521Q96K83 1311 aa21.88■■□□□ 1.09
CPSF4-201ENST00000292476 FBLN1P23142 703 aa21.88■■□□□ 1.09
CPSF4-201ENST00000292476 HAP1P54257 671 aaPredicted RBP21.88■■□□□ 1.09
CPSF4-201ENST00000292476 CCDC27Q2M243 656 aa21.88■■□□□ 1.09
CPSF4-201ENST00000292476 KCNH5Q8NCM2 988 aa21.88■■□□□ 1.09
CPSF4-201ENST00000292476 ABCA3Q99758 1704 aa21.87■■□□□ 1.09
CPSF4-201ENST00000292476 AFF2P51816 1311 aa21.87■■□□□ 1.09
CPSF4-201ENST00000292476 IL13P35225 146 aa21.87■■□□□ 1.09
CPSF4-201ENST00000292476 POTEAQ6S8J7 498 aa21.87■■□□□ 1.09
CPSF4-201ENST00000292476 TCP11L2Q8N4U5 519 aa21.87■■□□□ 1.09
CPSF4-201ENST00000292476 MARF1Q9Y4F3 1742 aaKnown RBP21.86■■□□□ 1.09
CPSF4-201ENST00000292476 SENP3-EIF4A1A0A087X0R7 540 aa21.86■■□□□ 1.09
CPSF4-201ENST00000292476 NUTM2GQ5VZR2 741 aa21.86■■□□□ 1.09
CPSF4-201ENST00000292476 NGLY1Q96IV0 654 aa21.86■■□□□ 1.09
CPSF4-201ENST00000292476 MSH5O43196 834 aa21.85■■□□□ 1.09
CPSF4-201ENST00000292476 FLT4P35916 1363 aa21.85■■□□□ 1.09
CPSF4-201ENST00000292476 AMPHP49418 695 aa21.84■■□□□ 1.09
CPSF4-201ENST00000292476 PLEKHF1Q96S99 279 aa21.84■■□□□ 1.09
CPSF4-201ENST00000292476 MAP3K19Q56UN5 1328 aa21.83■■□□□ 1.08
CPSF4-201ENST00000292476 ZNF772Q68DY9 489 aaPredicted RBP21.82■■□□□ 1.08
CPSF4-201ENST00000292476 CDCA7LQ96GN5 454 aa21.82■■□□□ 1.08
CPSF4-201ENST00000292476 E9PSI1 815 aa21.82■■□□□ 1.08
CPSF4-201ENST00000292476 WDR63Q8IWG1 891 aa21.82■■□□□ 1.08
CPSF4-201ENST00000292476 CRYBG1Q9Y4K1 1723 aa21.81■■□□□ 1.08
CPSF4-201ENST00000292476 RTL1A6NKG5 1358 aa21.81■■□□□ 1.08
CPSF4-201ENST00000292476 WWC1Q8IX03 1113 aa21.81■■□□□ 1.08
CPSF4-201ENST00000292476 SOX12O15370 315 aa21.8■■□□□ 1.08
CPSF4-201ENST00000292476 EXOC6Q8TAG9 804 aa21.8■■□□□ 1.08
CPSF4-201ENST00000292476 RSPH6AQ9H0K4 717 aa21.79■■□□□ 1.08
CPSF4-201ENST00000292476 SLFN5Q08AF3 891 aa21.79■■□□□ 1.08
CPSF4-201ENST00000292476 EIF4A2Q14240 407 aaKnown RBP21.79■■□□□ 1.08
CPSF4-201ENST00000292476 USP21Q9UK80 565 aa21.78■■□□□ 1.08
CPSF4-201ENST00000292476 PHRF1Q9P1Y6 1649 aaKnown RBP21.78■■□□□ 1.08
CPSF4-201ENST00000292476 PRKAR2BP31323 418 aa21.77■■□□□ 1.08
CPSF4-201ENST00000292476 TMPOP42166 694 aaKnown RBP21.77■■□□□ 1.08
CPSF4-201ENST00000292476 HSP90AB2PQ58FF8 381 aa21.77■■□□□ 1.08
CPSF4-201ENST00000292476 TCERG1O14776 1098 aaKnown RBP21.76■■□□□ 1.07
CPSF4-201ENST00000292476 NEUROD2Q15784 382 aa21.76■■□□□ 1.07
CPSF4-201ENST00000292476 FNBP4Q8N3X1 1017 aaPredicted RBP21.76■■□□□ 1.07
CPSF4-201ENST00000292476 TRMT2AQ8IZ69 625 aaKnown RBP21.75■■□□□ 1.07
CPSF4-201ENST00000292476 DUSP27Q5VZP5 1158 aa21.75■■□□□ 1.07
CPSF4-201ENST00000292476 ERICH6Q7L0X2 663 aa21.75■■□□□ 1.07
CPSF4-201ENST00000292476 USP19O94966 1318 aa21.75■■□□□ 1.07
CPSF4-201ENST00000292476 PEAK1Q9H792 1746 aa21.75■■□□□ 1.07
CPSF4-201ENST00000292476 SLIT3O75094 1523 aa21.74■■□□□ 1.07
CPSF4-201ENST00000292476 HOXC9P31274 260 aa21.74■■□□□ 1.07
CPSF4-201ENST00000292476 QTRT2Q9H974 415 aaKnown RBP21.74■■□□□ 1.07
CPSF4-201ENST00000292476 RRP7AQ9Y3A4 280 aaKnown RBP21.74■■□□□ 1.07
CPSF4-201ENST00000292476 PLCH1Q4KWH8 1693 aa21.73■■□□□ 1.07
CPSF4-201ENST00000292476 GCP02774 474 aa21.73■■□□□ 1.07
CPSF4-201ENST00000292476 HMOX1P09601 288 aa21.73■■□□□ 1.07
CPSF4-201ENST00000292476 MS4A1P11836 297 aa21.73■■□□□ 1.07
CPSF4-201ENST00000292476 BCL9LQ86UU0 1499 aa21.73■■□□□ 1.07
CPSF4-201ENST00000292476 FAM83GA6ND36 823 aa21.72■■□□□ 1.07
CPSF4-201ENST00000292476 RIPK4P57078 832 aa21.72■■□□□ 1.07
CPSF4-201ENST00000292476 LMOD3Q0VAK6 560 aa21.72■■□□□ 1.07
CPSF4-201ENST00000292476 IP6K1Q92551 441 aa21.72■■□□□ 1.07
CPSF4-201ENST00000292476 MYH16Q9H6N6 1097 aa21.72■■□□□ 1.07
CPSF4-201ENST00000292476 SLIT2O94813 1529 aa21.72■■□□□ 1.07
CPSF4-201ENST00000292476 NFAT5O94916 1531 aa21.72■■□□□ 1.07
CPSF4-201ENST00000292476 CALD1Q05682 793 aaKnown RBP21.72■■□□□ 1.07
CPSF4-201ENST00000292476 IL16Q14005 1332 aa21.71■■□□□ 1.07
CPSF4-201ENST00000292476 ZC3H6P61129 1189 aaKnown RBP21.71■■□□□ 1.07
CPSF4-201ENST00000292476 NFE2L2Q16236 605 aa21.71■■□□□ 1.07
CPSF4-201ENST00000292476 RXRBP28702 533 aa21.7■■□□□ 1.06
CPSF4-201ENST00000292476 SULT6B1Q6IMI4 303 aa21.7■■□□□ 1.06
CPSF4-201ENST00000292476 PRDM11Q9NQV5 511 aa21.7■■□□□ 1.06
CPSF4-201ENST00000292476 KIAA0232Q92628 1395 aa21.7■■□□□ 1.06
CPSF4-201ENST00000292476 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.69■■□□□ 1.06
CPSF4-201ENST00000292476 UNC5CLQ8IV45 518 aa21.69■■□□□ 1.06
CPSF4-201ENST00000292476 TRPC5Q9UL62 973 aaPredicted RBP21.69■■□□□ 1.06
CPSF4-201ENST00000292476 COL14A1Q05707 1796 aaKnown RBP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms