RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 FLT4P35916 1363 aa19.79■□□□□ 0.76
SF3B4-201ENST00000271628 KIF24Q5T7B8 1368 aa19.79■□□□□ 0.76
SF3B4-201ENST00000271628 MAP3K19Q56UN5 1328 aa19.78■□□□□ 0.76
SF3B4-201ENST00000271628 ESCO1Q5FWF5 840 aa19.78■□□□□ 0.76
SF3B4-201ENST00000271628 PROSER2Q86WR7 435 aaPredicted RBP19.78■□□□□ 0.76
SF3B4-201ENST00000271628 PEAK1Q9H792 1746 aa19.77■□□□□ 0.76
SF3B4-201ENST00000271628 PAK3O75914 559 aaPredicted RBP19.77■□□□□ 0.76
SF3B4-201ENST00000271628 HSP90AB2PQ58FF8 381 aa19.77■□□□□ 0.76
SF3B4-201ENST00000271628 ERICH6Q7L0X2 663 aa19.77■□□□□ 0.75
SF3B4-201ENST00000271628 SOX12O15370 315 aa19.76■□□□□ 0.75
SF3B4-201ENST00000271628 CANXP27824 592 aaKnown RBP19.76■□□□□ 0.75
SF3B4-201ENST00000271628 PSME1Q06323 249 aa19.76■□□□□ 0.75
SF3B4-201ENST00000271628 AMPHP49418 695 aa19.75■□□□□ 0.75
SF3B4-201ENST00000271628 SULT6B1Q6IMI4 303 aa19.75■□□□□ 0.75
SF3B4-201ENST00000271628 C19orf44Q9H6X5 657 aa19.75■□□□□ 0.75
SF3B4-201ENST00000271628 TSR2Q969E8 191 aaKnown RBP19.74■□□□□ 0.75
SF3B4-201ENST00000271628 RGPD1P0DJD0 1748 aa19.74■□□□□ 0.75
SF3B4-201ENST00000271628 ARHGEF10O15013 1369 aa19.73■□□□□ 0.75
SF3B4-201ENST00000271628 MARF1Q9Y4F3 1742 aaKnown RBP19.72■□□□□ 0.75
SF3B4-201ENST00000271628 EXOSC9Q06265 439 aaKnown RBP19.72■□□□□ 0.75
SF3B4-201ENST00000271628 NCOA3Q9Y6Q9 1424 aa19.72■□□□□ 0.75
SF3B4-201ENST00000271628 GNAI1P63096 354 aa19.71■□□□□ 0.75
SF3B4-201ENST00000271628 FRAT1Q92837 279 aaPredicted RBP19.71■□□□□ 0.75
SF3B4-201ENST00000271628 ZNF428Q96B54 188 aa19.71■□□□□ 0.75
SF3B4-201ENST00000271628 DLG5Q8TDM6 1919 aa19.7■□□□□ 0.74
SF3B4-201ENST00000271628 NUTM2GQ5VZR2 741 aa19.7■□□□□ 0.74
SF3B4-201ENST00000271628 IFT57Q9NWB7 429 aa19.7■□□□□ 0.74
SF3B4-201ENST00000271628 AAMPQ13685 434 aa19.69■□□□□ 0.74
SF3B4-201ENST00000271628 KCNH5Q8NCM2 988 aa19.69■□□□□ 0.74
SF3B4-201ENST00000271628 MS4A1P11836 297 aa19.69■□□□□ 0.74
SF3B4-201ENST00000271628 AEBP1Q8IUX7 1158 aa19.69■□□□□ 0.74
SF3B4-201ENST00000271628 HOXC9P31274 260 aa19.68■□□□□ 0.74
SF3B4-201ENST00000271628 ORAI2Q96SN7 254 aa19.68■□□□□ 0.74
SF3B4-201ENST00000271628 RTL1A6NKG5 1358 aa19.68■□□□□ 0.74
SF3B4-201ENST00000271628 KDRP35968 1356 aa19.67■□□□□ 0.74
SF3B4-201ENST00000271628 IGSF1Q8N6C5 1336 aa19.67■□□□□ 0.74
SF3B4-201ENST00000271628 CFAP44Q96MT7 982 aa19.67■□□□□ 0.74
SF3B4-201ENST00000271628 KIF1AQ12756 1690 aa19.67■□□□□ 0.74
SF3B4-201ENST00000271628 DCCP43146 1447 aa19.67■□□□□ 0.74
SF3B4-201ENST00000271628 C1orf167Q5SNV9 1468 aa19.66■□□□□ 0.74
SF3B4-201ENST00000271628 ZNF853P0CG23 659 aa19.66■□□□□ 0.74
SF3B4-201ENST00000271628 LAS1LQ9Y4W2 734 aaKnown RBP19.66■□□□□ 0.74
SF3B4-201ENST00000271628 FOXO3O43524 673 aa19.66■□□□□ 0.74
SF3B4-201ENST00000271628 ATF3P18847 181 aa19.66■□□□□ 0.74
SF3B4-201ENST00000271628 ALDH1L2Q3SY69 923 aa19.66■□□□□ 0.74
SF3B4-201ENST00000271628 ZKSCAN2Q63HK3 967 aa19.65■□□□□ 0.74
SF3B4-201ENST00000271628 EYA1Q99502 592 aa19.65■□□□□ 0.74
SF3B4-201ENST00000271628 BCL2L13Q9BXK5 485 aa19.65■□□□□ 0.74
SF3B4-201ENST00000271628 SMC4Q9NTJ3 1288 aa19.65■□□□□ 0.74
SF3B4-201ENST00000271628 CENPQQ7L2Z9 268 aaPredicted RBP19.64■□□□□ 0.74
SF3B4-201ENST00000271628 TMEM94Q12767 1356 aa19.64■□□□□ 0.73
SF3B4-201ENST00000271628 HSPA2P54652 639 aa19.63■□□□□ 0.73
SF3B4-201ENST00000271628 PANK1Q8TE04 598 aa19.63■□□□□ 0.73
SF3B4-201ENST00000271628 THUMPD2Q9BTF0 503 aaKnown RBP19.63■□□□□ 0.73
SF3B4-201ENST00000271628 KDM4FA0A1W2PPD8 638 aa19.63■□□□□ 0.73
SF3B4-201ENST00000271628 SSH1Q8WYL5 1049 aa19.63■□□□□ 0.73
SF3B4-201ENST00000271628 COG6Q9Y2V7 657 aa19.63■□□□□ 0.73
SF3B4-201ENST00000271628 LTN1O94822 1766 aa19.62■□□□□ 0.73
SF3B4-201ENST00000271628 IP6K1Q92551 441 aa19.62■□□□□ 0.73
SF3B4-201ENST00000271628 STRCP1A6NGW2 1772 aa19.62■□□□□ 0.73
SF3B4-201ENST00000271628 KDM2BQ8NHM5 1336 aa19.62■□□□□ 0.73
SF3B4-201ENST00000271628 KIF16BQ96L93 1317 aa19.62■□□□□ 0.73
SF3B4-201ENST00000271628 NFAT5O94916 1531 aa19.61■□□□□ 0.73
SF3B4-201ENST00000271628 KRT28Q7Z3Y7 464 aa19.61■□□□□ 0.73
SF3B4-201ENST00000271628 CADPS2Q86UW7 1296 aa19.61■□□□□ 0.73
SF3B4-201ENST00000271628 FAM83GA6ND36 823 aa19.61■□□□□ 0.73
SF3B4-201ENST00000271628 TCERG1O14776 1098 aaKnown RBP19.61■□□□□ 0.73
SF3B4-201ENST00000271628 IPO8O15397 1037 aaKnown RBP19.61■□□□□ 0.73
SF3B4-201ENST00000271628 BRPF1P55201 1214 aaPredicted RBP19.61■□□□□ 0.73
SF3B4-201ENST00000271628 GAS2L2Q8NHY3 880 aa19.61■□□□□ 0.73
SF3B4-201ENST00000271628 CLUAP1Q96AJ1 413 aa19.61■□□□□ 0.73
SF3B4-201ENST00000271628 MBIPQ9NS73 344 aa19.61■□□□□ 0.73
SF3B4-201ENST00000271628 FTSJ3Q8IY81 847 aaKnown RBP19.6■□□□□ 0.73
SF3B4-201ENST00000271628 DZIP1LQ8IYY4 767 aaKnown RBP19.6■□□□□ 0.73
SF3B4-201ENST00000271628 MST1RQ04912 1400 aa19.59■□□□□ 0.73
SF3B4-201ENST00000271628 PHRF1Q9P1Y6 1649 aaKnown RBP19.59■□□□□ 0.73
SF3B4-201ENST00000271628 HAP1P54257 671 aaPredicted RBP19.59■□□□□ 0.73
SF3B4-201ENST00000271628 LMTK3Q96Q04 1460 aa19.59■□□□□ 0.73
SF3B4-201ENST00000271628 TRPM3Q9HCF6 1732 aaPredicted RBP19.58■□□□□ 0.73
SF3B4-201ENST00000271628 VAMP4O75379 141 aa19.58■□□□□ 0.73
SF3B4-201ENST00000271628 ANP32AP39687 249 aaKnown RBP19.58■□□□□ 0.73
SF3B4-201ENST00000271628 DCTN1Q14203 1278 aa19.58■□□□□ 0.73
SF3B4-201ENST00000271628 RTF1Q92541 710 aaKnown RBP19.58■□□□□ 0.73
SF3B4-201ENST00000271628 NOP58Q9Y2X3 529 aaKnown RBP19.58■□□□□ 0.73
SF3B4-201ENST00000271628 GCP02774 474 aa19.58■□□□□ 0.72
SF3B4-201ENST00000271628 MTHFSDQ2M296 383 aaKnown RBP19.58■□□□□ 0.72
SF3B4-201ENST00000271628 ATF7IPQ6VMQ6 1270 aa19.58■□□□□ 0.72
SF3B4-201ENST00000271628 SLIT3O75094 1523 aa19.57■□□□□ 0.72
SF3B4-201ENST00000271628 HTATSF1O43719 755 aaKnown RBP19.57■□□□□ 0.72
SF3B4-201ENST00000271628 MSH6P52701 1360 aa19.57■□□□□ 0.72
SF3B4-201ENST00000271628 RLBP1P12271 317 aa19.56■□□□□ 0.72
SF3B4-201ENST00000271628 MVPQ14764 893 aaKnown RBP19.56■□□□□ 0.72
SF3B4-201ENST00000271628 NOB1Q9ULX3 412 aaKnown RBP19.56■□□□□ 0.72
SF3B4-201ENST00000271628 CHL1O00533 1208 aa19.56■□□□□ 0.72
SF3B4-201ENST00000271628 XPCQ01831 940 aaPredicted RBP19.56■□□□□ 0.72
SF3B4-201ENST00000271628 TWISTNBQ3B726 338 aaPredicted RBP19.56■□□□□ 0.72
SF3B4-201ENST00000271628 USP19O94966 1318 aa19.55■□□□□ 0.72
SF3B4-201ENST00000271628 TRIM27P14373 513 aa19.55■□□□□ 0.72
SF3B4-201ENST00000271628 LMOD2Q6P5Q4 547 aa19.55■□□□□ 0.72
SF3B4-201ENST00000271628 MCM10Q7L590 875 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms