RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 RRP12Q5JTH9 1297 aaKnown RBP16.75■□□□□ 0.27
SIX4-201ENST00000216513 DNAJC5Q9H3Z4 198 aa16.75■□□□□ 0.27
SIX4-201ENST00000216513 MYCNP04198 464 aaPredicted RBP16.74■□□□□ 0.27
SIX4-201ENST00000216513 ABCC5O15440 1437 aa16.73■□□□□ 0.27
SIX4-201ENST00000216513 RALYLQ86SE5 291 aaKnown RBP16.73■□□□□ 0.27
SIX4-201ENST00000216513 TSR2Q969E8 191 aaKnown RBP16.73■□□□□ 0.27
SIX4-201ENST00000216513 RIMS2Q9UQ26 1411 aa16.73■□□□□ 0.27
SIX4-201ENST00000216513 NSD3Q9BZ95 1437 aa16.73■□□□□ 0.27
SIX4-201ENST00000216513 RAPGEF6Q8TEU7 1601 aa16.73■□□□□ 0.27
SIX4-201ENST00000216513 ZKSCAN1P17029 563 aaPredicted RBP16.72■□□□□ 0.27
SIX4-201ENST00000216513 GPTP24298 496 aa16.72■□□□□ 0.27
SIX4-201ENST00000216513 AMOTQ4VCS5 1084 aa16.72■□□□□ 0.27
SIX4-201ENST00000216513 PEG3Q9GZU2 1588 aa16.72■□□□□ 0.27
SIX4-201ENST00000216513 MCM10Q7L590 875 aa16.72■□□□□ 0.27
SIX4-201ENST00000216513 C6orf229H3BNL8 230 aa16.72■□□□□ 0.27
SIX4-201ENST00000216513 PES1O00541 588 aaKnown RBP16.72■□□□□ 0.27
SIX4-201ENST00000216513 SLC3A2P08195 630 aaKnown RBP16.72■□□□□ 0.27
SIX4-201ENST00000216513 FAM161AQ3B820 660 aa16.72■□□□□ 0.27
SIX4-201ENST00000216513 FSD1Q9BTV5 496 aa16.72■□□□□ 0.27
SIX4-201ENST00000216513 EXOSC9Q06265 439 aaKnown RBP16.71■□□□□ 0.27
SIX4-201ENST00000216513 THOC2Q8NI27 1593 aaKnown RBP16.71■□□□□ 0.27
SIX4-201ENST00000216513 ATP6V1AP38606 617 aa16.71■□□□□ 0.27
SIX4-201ENST00000216513 BTG4Q9NY30 223 aa16.71■□□□□ 0.27
SIX4-201ENST00000216513 EMILIN1Q9Y6C2 1016 aa16.71■□□□□ 0.27
SIX4-201ENST00000216513 TMEM132AQ24JP5 1023 aa16.7■□□□□ 0.26
SIX4-201ENST00000216513 RAI14Q9P0K7 980 aa16.7■□□□□ 0.26
SIX4-201ENST00000216513 KCNA6P17658 529 aa16.7■□□□□ 0.26
SIX4-201ENST00000216513 IBSPP21815 317 aaPredicted RBP16.7■□□□□ 0.26
SIX4-201ENST00000216513 CLASRPQ8N2M8 674 aaKnown RBP16.7■□□□□ 0.26
SIX4-201ENST00000216513 GNAI3P08754 354 aa16.7■□□□□ 0.26
SIX4-201ENST00000216513 TRMT112Q9UI30 125 aaKnown RBP16.7■□□□□ 0.26
SIX4-201ENST00000216513 CHMP4CQ96CF2 233 aa16.69■□□□□ 0.26
SIX4-201ENST00000216513 USP21Q9UK80 565 aa16.69■□□□□ 0.26
SIX4-201ENST00000216513 PTPN23Q9H3S7 1636 aa16.69■□□□□ 0.26
SIX4-201ENST00000216513 ST18O60284 1047 aa16.69■□□□□ 0.26
SIX4-201ENST00000216513 ST5P78524 1137 aa16.69■□□□□ 0.26
SIX4-201ENST00000216513 IFNL2Q8IZJ0 200 aa16.69■□□□□ 0.26
SIX4-201ENST00000216513 ZCRB1Q8TBF4 217 aaKnown RBP16.68■□□□□ 0.26
SIX4-201ENST00000216513 WDR62O43379 1518 aa16.68■□□□□ 0.26
SIX4-201ENST00000216513 SRCIN1Q9C0H9 1055 aa16.68■□□□□ 0.26
SIX4-201ENST00000216513 ABCC2Q92887 1545 aa16.68■□□□□ 0.26
SIX4-201ENST00000216513 DCTN1Q14203 1278 aa16.68■□□□□ 0.26
SIX4-201ENST00000216513 IPO9Q96P70 1041 aaKnown RBP16.68■□□□□ 0.26
SIX4-201ENST00000216513 STK32BQ9NY57 414 aa16.68■□□□□ 0.26
SIX4-201ENST00000216513 RNF20Q5VTR2 975 aa16.67■□□□□ 0.26
SIX4-201ENST00000216513 FKBP4Q02790 459 aaKnown RBP eCLIP16.67■□□□□ 0.26
SIX4-201ENST00000216513 WDR78Q5VTH9 848 aa16.67■□□□□ 0.26
SIX4-201ENST00000216513 PANK1Q8TE04 598 aa16.67■□□□□ 0.26
SIX4-201ENST00000216513 SYCP2Q9BX26 1530 aa16.67■□□□□ 0.26
SIX4-201ENST00000216513 TRAPPC8Q9Y2L5 1435 aa16.66■□□□□ 0.26
SIX4-201ENST00000216513 MPHOSPH10O00566 681 aaKnown RBP16.66■□□□□ 0.26
SIX4-201ENST00000216513 CHMP4BP1P59074 171 aa16.66■□□□□ 0.26
SIX4-201ENST00000216513 C1orf115Q9H7X2 142 aa16.66■□□□□ 0.26
SIX4-201ENST00000216513 ABCF2Q9UG63 623 aa16.66■□□□□ 0.26
SIX4-201ENST00000216513 FAM98CQ17RN3 349 aaKnown RBP16.66■□□□□ 0.26
SIX4-201ENST00000216513 ZBTB3Q9H5J0 574 aa16.66■□□□□ 0.26
SIX4-201ENST00000216513 MYD88Q99836 296 aa16.66■□□□□ 0.26
SIX4-201ENST00000216513 DDX17Q92841 729 aaKnown RBP16.65■□□□□ 0.26
SIX4-201ENST00000216513 CDCA7LQ96GN5 454 aa16.65■□□□□ 0.26
SIX4-201ENST00000216513 NAIPQ13075 1403 aa16.65■□□□□ 0.26
SIX4-201ENST00000216513 LRP2BPQ9P2M1 347 aa16.65■□□□□ 0.26
SIX4-201ENST00000216513 RRP1P56182 461 aaKnown RBP16.65■□□□□ 0.26
SIX4-201ENST00000216513 NBPF6Q5VWK0 638 aa16.65■□□□□ 0.26
SIX4-201ENST00000216513 NBPF5PQ86XG9 351 aaPredicted RBP16.65■□□□□ 0.26
SIX4-201ENST00000216513 NBPF4Q96M43 638 aa16.65■□□□□ 0.26
SIX4-201ENST00000216513 ADAMTS12P58397 1594 aa16.64■□□□□ 0.26
SIX4-201ENST00000216513 THUMPD2Q9BTF0 503 aaKnown RBP16.64■□□□□ 0.25
SIX4-201ENST00000216513 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.64■□□□□ 0.25
SIX4-201ENST00000216513 PDE4AP27815 886 aa16.64■□□□□ 0.25
SIX4-201ENST00000216513 TPD52L1Q16890 204 aaPredicted RBP16.64■□□□□ 0.25
SIX4-201ENST00000216513 FMNL2Q96PY5 1086 aa16.64■□□□□ 0.25
SIX4-201ENST00000216513 C11orf95C9JLR9 678 aaPredicted RBP16.64■□□□□ 0.25
SIX4-201ENST00000216513 METTL24Q5JXM2 366 aa16.64■□□□□ 0.25
SIX4-201ENST00000216513 GBP4Q96PP9 640 aa16.64■□□□□ 0.25
SIX4-201ENST00000216513 PARP3Q9Y6F1 533 aa16.64■□□□□ 0.25
SIX4-201ENST00000216513 NOC3LQ8WTT2 800 aaKnown RBP16.63■□□□□ 0.25
SIX4-201ENST00000216513 LNPKQ9C0E8 428 aa16.63■□□□□ 0.25
SIX4-201ENST00000216513 GNAI2P04899 355 aa16.63■□□□□ 0.25
SIX4-201ENST00000216513 CEP126Q9P2H0 1117 aa16.63■□□□□ 0.25
SIX4-201ENST00000216513 FBXO3Q9UK99 471 aa16.63■□□□□ 0.25
SIX4-201ENST00000216513 R3HCC1Q9Y3T6 440 aaKnown RBP16.63■□□□□ 0.25
SIX4-201ENST00000216513 TPM4P67936 248 aa16.62■□□□□ 0.25
SIX4-201ENST00000216513 CAVIN4Q5BKX8 364 aa16.62■□□□□ 0.25
SIX4-201ENST00000216513 SART3Q15020 963 aaKnown RBP16.62■□□□□ 0.25
SIX4-201ENST00000216513 CRACR2BQ8N4Y2 399 aaPredicted RBP16.62■□□□□ 0.25
SIX4-201ENST00000216513 C14orf93Q9H972 538 aaKnown RBP16.62■□□□□ 0.25
SIX4-201ENST00000216513 ABCC10Q5T3U5 1492 aa16.62■□□□□ 0.25
SIX4-201ENST00000216513 DDX46Q7L014 1031 aaKnown RBP16.62■□□□□ 0.25
SIX4-201ENST00000216513 APBA3O96018 575 aa16.61■□□□□ 0.25
SIX4-201ENST00000216513 BAG6P46379 1132 aa16.61■□□□□ 0.25
SIX4-201ENST00000216513 CEP89Q96ST8 783 aa16.61■□□□□ 0.25
SIX4-201ENST00000216513 SLAIN2Q9P270 581 aa16.61■□□□□ 0.25
SIX4-201ENST00000216513 GPATCH8Q9UKJ3 1502 aaKnown RBP16.61■□□□□ 0.25
SIX4-201ENST00000216513 A0A087WZG4 1122 aa16.61■□□□□ 0.25
SIX4-201ENST00000216513 GOLGA6L3A6NEY3 463 aa16.6■□□□□ 0.25
SIX4-201ENST00000216513 IL2RBP14784 551 aa16.6■□□□□ 0.25
SIX4-201ENST00000216513 TAF7Q15545 349 aaPredicted RBP16.6■□□□□ 0.25
SIX4-201ENST00000216513 FCHSD2O94868 740 aa16.6■□□□□ 0.25
SIX4-201ENST00000216513 ERC1Q8IUD2 1116 aa16.6■□□□□ 0.25
SIX4-201ENST00000216513 NOB1Q9ULX3 412 aaKnown RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms