RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 DZIP1LQ8IYY4 767 aaKnown RBP10.58□□□□□ -0.72
VAMP3-201ENST00000054666 TTC21AQ8NDW8 1320 aa10.58□□□□□ -0.72
VAMP3-201ENST00000054666 PIK3R4Q99570 1358 aa10.57□□□□□ -0.72
VAMP3-201ENST00000054666 RLBP1P12271 317 aa10.57□□□□□ -0.72
VAMP3-201ENST00000054666 FAM161AQ3B820 660 aa10.57□□□□□ -0.72
VAMP3-201ENST00000054666 ZNF428Q96B54 188 aa10.57□□□□□ -0.72
VAMP3-201ENST00000054666 ZBTB47Q9UFB7 747 aaPredicted RBP10.57□□□□□ -0.72
VAMP3-201ENST00000054666 ANKARQ7Z5J8 1434 aa10.56□□□□□ -0.72
VAMP3-201ENST00000054666 IPO8O15397 1037 aaKnown RBP10.56□□□□□ -0.72
VAMP3-201ENST00000054666 GNAI1P63096 354 aa10.56□□□□□ -0.72
VAMP3-201ENST00000054666 SSH1Q8WYL5 1049 aa10.56□□□□□ -0.72
VAMP3-201ENST00000054666 LAS1LQ9Y4W2 734 aaKnown RBP10.56□□□□□ -0.72
VAMP3-201ENST00000054666 ALDH1L2Q3SY69 923 aa10.56□□□□□ -0.72
VAMP3-201ENST00000054666 ATF7IPQ6VMQ6 1270 aa10.56□□□□□ -0.72
VAMP3-201ENST00000054666 NGDNQ8NEJ9 315 aaKnown RBP10.56□□□□□ -0.72
VAMP3-201ENST00000054666 IFT57Q9NWB7 429 aa10.56□□□□□ -0.72
VAMP3-201ENST00000054666 USP31Q70CQ4 1352 aa10.55□□□□□ -0.72
VAMP3-201ENST00000054666 IGHDP01880 384 aa10.55□□□□□ -0.72
VAMP3-201ENST00000054666 PHACTR3Q96KR7 559 aa10.55□□□□□ -0.72
VAMP3-201ENST00000054666 DDX19BQ9UMR2 479 aa10.55□□□□□ -0.72
VAMP3-201ENST00000054666 TNNQ9UQP3 1299 aa10.55□□□□□ -0.72
VAMP3-201ENST00000054666 ZNF142P52746 1687 aaPredicted RBP10.55□□□□□ -0.72
VAMP3-201ENST00000054666 TRIM27P14373 513 aa10.54□□□□□ -0.72
VAMP3-201ENST00000054666 ITPRIPQ8IWB1 547 aa10.54□□□□□ -0.72
VAMP3-201ENST00000054666 DDRGK1Q96HY6 314 aa10.54□□□□□ -0.72
VAMP3-201ENST00000054666 RWDD1Q9H446 243 aaPredicted RBP10.54□□□□□ -0.72
VAMP3-201ENST00000054666 SSH2Q76I76 1423 aa10.54□□□□□ -0.72
VAMP3-201ENST00000054666 DLG5Q8TDM6 1919 aa10.54□□□□□ -0.72
VAMP3-201ENST00000054666 FMN2Q9NZ56 1722 aa10.53□□□□□ -0.72
VAMP3-201ENST00000054666 VIRMAQ69YN4 1812 aaKnown RBP10.53□□□□□ -0.72
VAMP3-201ENST00000054666 EIF4A2Q14240 407 aaKnown RBP10.53□□□□□ -0.72
VAMP3-201ENST00000054666 NOB1Q9ULX3 412 aaKnown RBP10.53□□□□□ -0.72
VAMP3-201ENST00000054666 PEAK1Q9H792 1746 aa10.53□□□□□ -0.72
VAMP3-201ENST00000054666 RGPD8O14715 1765 aaPredicted RBP10.53□□□□□ -0.72
VAMP3-201ENST00000054666 KCNA6P17658 529 aa10.52□□□□□ -0.73
VAMP3-201ENST00000054666 FLT4P35916 1363 aa10.52□□□□□ -0.73
VAMP3-201ENST00000054666 PCDHB15Q9Y5E8 787 aa10.52□□□□□ -0.73
VAMP3-201ENST00000054666 SBNO1A3KN83 1393 aa10.52□□□□□ -0.73
VAMP3-201ENST00000054666 ARHGEF10O15013 1369 aa10.52□□□□□ -0.73
VAMP3-201ENST00000054666 SOX12O15370 315 aa10.52□□□□□ -0.73
VAMP3-201ENST00000054666 C8orf34Q49A92 452 aa10.52□□□□□ -0.73
VAMP3-201ENST00000054666 SULT6B1Q6IMI4 303 aa10.52□□□□□ -0.73
VAMP3-201ENST00000054666 ANKLE2Q86XL3 938 aa10.52□□□□□ -0.73
VAMP3-201ENST00000054666 THUMPD2Q9BTF0 503 aaKnown RBP10.52□□□□□ -0.73
VAMP3-201ENST00000054666 PIK3C2AO00443 1686 aa10.51□□□□□ -0.73
VAMP3-201ENST00000054666 CFAP44Q96MT7 982 aa10.51□□□□□ -0.73
VAMP3-201ENST00000054666 RGPD1P0DJD0 1748 aa10.51□□□□□ -0.73
VAMP3-201ENST00000054666 PAK3O75914 559 aaPredicted RBP10.5□□□□□ -0.73
VAMP3-201ENST00000054666 HAP1P54257 671 aaPredicted RBP10.5□□□□□ -0.73
VAMP3-201ENST00000054666 BRPF1P55201 1214 aaPredicted RBP10.5□□□□□ -0.73
VAMP3-201ENST00000054666 CHMP4BQ9H444 224 aaKnown RBP10.5□□□□□ -0.73
VAMP3-201ENST00000054666 MBIPQ9NS73 344 aa10.5□□□□□ -0.73
VAMP3-201ENST00000054666 AEBP1Q8IUX7 1158 aa10.5□□□□□ -0.73
VAMP3-201ENST00000054666 MAP3K19Q56UN5 1328 aa10.49□□□□□ -0.73
VAMP3-201ENST00000054666 ZNF853P0CG23 659 aa10.49□□□□□ -0.73
VAMP3-201ENST00000054666 AMPHP49418 695 aa10.49□□□□□ -0.73
VAMP3-201ENST00000054666 TWISTNBQ3B726 338 aaPredicted RBP10.49□□□□□ -0.73
VAMP3-201ENST00000054666 HSP90AB2PQ58FF8 381 aa10.49□□□□□ -0.73
VAMP3-201ENST00000054666 TMEM57Q8N5G2 664 aa10.49□□□□□ -0.73
VAMP3-201ENST00000054666 CHD2O14647 1828 aaKnown RBP10.49□□□□□ -0.73
VAMP3-201ENST00000054666 ADAMTSL3P82987 1691 aa10.49□□□□□ -0.73
VAMP3-201ENST00000054666 USP54Q70EL1 1684 aa10.48□□□□□ -0.73
VAMP3-201ENST00000054666 VAMP4O75379 141 aa10.48□□□□□ -0.73
VAMP3-201ENST00000054666 HDAC1Q13547 482 aaPredicted RBP10.48□□□□□ -0.73
VAMP3-201ENST00000054666 PDZRN3Q9UPQ7 1066 aa10.48□□□□□ -0.73
VAMP3-201ENST00000054666 KIF24Q5T7B8 1368 aa10.48□□□□□ -0.73
VAMP3-201ENST00000054666 FAM83GA6ND36 823 aa10.48□□□□□ -0.73
VAMP3-201ENST00000054666 NLRP6P59044 892 aa10.48□□□□□ -0.73
VAMP3-201ENST00000054666 ARHGAP45Q92619 1136 aa10.48□□□□□ -0.73
VAMP3-201ENST00000054666 DAXXQ9UER7 740 aaPredicted RBP10.48□□□□□ -0.73
VAMP3-201ENST00000054666 SETD1BQ9UPS6 1966 aaKnown RBP10.47□□□□□ -0.73
VAMP3-201ENST00000054666 MRPL50Q8N5N7 158 aaKnown RBP10.47□□□□□ -0.73
VAMP3-201ENST00000054666 DCTN1Q14203 1278 aa10.46□□□□□ -0.73
VAMP3-201ENST00000054666 ADGRL3Q9HAR2 1447 aa10.46□□□□□ -0.74
VAMP3-201ENST00000054666 ELL2O00472 640 aaPredicted RBP10.46□□□□□ -0.74
VAMP3-201ENST00000054666 TSPYL6Q8N831 410 aa10.46□□□□□ -0.74
VAMP3-201ENST00000054666 RTF1Q92541 710 aaKnown RBP10.46□□□□□ -0.74
VAMP3-201ENST00000054666 API5Q9BZZ5 524 aaKnown RBP10.46□□□□□ -0.74
VAMP3-201ENST00000054666 ZBTB40Q9NUA8 1239 aa10.46□□□□□ -0.74
VAMP3-201ENST00000054666 C14orf37Q86TY3 774 aa10.45□□□□□ -0.74
VAMP3-201ENST00000054666 GAS2L2Q8NHY3 880 aa10.45□□□□□ -0.74
VAMP3-201ENST00000054666 UPF2Q9HAU5 1272 aaKnown RBP10.45□□□□□ -0.74
VAMP3-201ENST00000054666 KDRP35968 1356 aa10.45□□□□□ -0.74
VAMP3-201ENST00000054666 IGSF1Q8N6C5 1336 aa10.45□□□□□ -0.74
VAMP3-201ENST00000054666 ABTB2Q8N961 1025 aa10.45□□□□□ -0.74
VAMP3-201ENST00000054666 PHF8Q9UPP1 1060 aa10.45□□□□□ -0.74
VAMP3-201ENST00000054666 NPHP4O75161 1426 aaPredicted RBP10.44□□□□□ -0.74
VAMP3-201ENST00000054666 RTL1A6NKG5 1358 aa10.44□□□□□ -0.74
VAMP3-201ENST00000054666 C8orf58Q8NAV2 365 aa10.44□□□□□ -0.74
VAMP3-201ENST00000054666 MARF1Q9Y4F3 1742 aaKnown RBP10.44□□□□□ -0.74
VAMP3-201ENST00000054666 ABCC4O15439 1325 aa10.44□□□□□ -0.74
VAMP3-201ENST00000054666 KIAA0232Q92628 1395 aa10.44□□□□□ -0.74
VAMP3-201ENST00000054666 RTL5Q5HYW3 569 aaPredicted RBP10.43□□□□□ -0.74
VAMP3-201ENST00000054666 MCM10Q7L590 875 aa10.43□□□□□ -0.74
VAMP3-201ENST00000054666 SMC5Q8IY18 1101 aa10.43□□□□□ -0.74
VAMP3-201ENST00000054666 CHL1O00533 1208 aa10.42□□□□□ -0.74
VAMP3-201ENST00000054666 HOXC9P31274 260 aa10.42□□□□□ -0.74
VAMP3-201ENST00000054666 NBR1Q14596 966 aa10.42□□□□□ -0.74
VAMP3-201ENST00000054666 NUTM2GQ5VZR2 741 aa10.42□□□□□ -0.74
VAMP3-201ENST00000054666 EYA1Q99502 592 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms