RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MID1IP1Q9NPA3 183 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 SLC2A4RGQ9NR83 387 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 SMIM35A0A1B0GVV1 85 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TNFRSF10BO14763 440 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TRAPPC6AO75865 159 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 PGAM1P18669 254 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TFE3P19532 575 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 IRX1P78414 480 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 C1QBPQ07021 282 aaKnown RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 NAB1Q13506 487 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 LAPTM5Q13571 262 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TOB2Q14106 344 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF268Q14587 947 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 RFTN2Q52LD8 501 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 FAM91A1Q658Y4 838 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TRIM40Q6P9F5 258 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 CRTC3Q6UUV7 619 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 UNC93AQ86WB7 457 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 GJD3Q8N144 294 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 OR8H2Q8N162 312 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TCAIMQ8N3R3 496 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 ZSCAN4Q8NAM6 433 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TMEM145Q8NBT3 493 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 OR2L5Q8NG80 312 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 SPPL2BQ8TCT7 592 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 GPT2Q8TD30 523 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TDP1Q9NUW8 608 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 ADGRA3Q8IWK6 1321 aa6.17□□□□□ -1.42
SCN1A-217ENST00000637988 TRIM49D1C9J1S8 452 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 TLR5O60602 858 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 FOSL2P15408 326 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF155Q12901 538 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 MRPL49Q13405 166 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.16□□□□□ -1.423e-6■■■□□ 18.5
SCN1A-217ENST00000637988 WSCD1Q658N2 575 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 PDE12Q6L8Q7 609 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 MSANTD2Q6P1R3 559 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ABHD13Q7L211 337 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SLC29A4Q7RTT9 530 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 PROSER1Q86XN7 944 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 AADATQ8N5Z0 425 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 PHF21BQ96EK2 531 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 C1QTNF1Q9BXJ1 281 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 TRIM2Q9C040 744 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 IRF2BPLQ9H1B7 796 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 HHATLQ9HCP6 504 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 IRAK3Q9Y616 596 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 DCLK1O15075 740 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 KIF1CO43896 1103 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 RSL1D1O76021 490 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 TM7SF2O76062 418 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 MFN2O95140 757 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 OMPP47874 163 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 CPA2P48052 419 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 DNASE1L1P49184 302 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 CAPZA1P52907 286 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ATXN1P54253 815 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 DUSP4Q13115 394 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SLC13A2Q13183 592 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 LARS2Q15031 903 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 KCTD8Q6ZWB6 473 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 PLPPR4Q7Z2D5 763 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 IL22RA1Q8N6P7 574 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 HTR3CQ8WXA8 447 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ING5Q8WYH8 240 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 PIGKQ92643 395 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 CENPIQ92674 756 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 TM6SF2Q9BZW4 377 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SRMSQ9H3Y6 488 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 WHRNQ9P202 907 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 DMGDHQ9UI17 866 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ADAM28Q9UKQ2 775 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 MYO5BQ9ULV0 1848 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 TMEM150CB9EJG8 249 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 VEGFDO43915 354 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ARP10275 920 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 RAD23BP54727 409 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 NRLP54845 237 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 MANFP55145 182 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 MGAT5Q09328 741 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF846Q147U1 533 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 CARTPTQ16568 116 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 PAOXQ6QHF9 649 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 VSTM1Q6UX27 236 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF605Q86T29 641 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 CAND1Q86VP6 1230 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ZC3H7AQ8IWR0 971 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SETD9Q8NE22 299 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 MDM1Q8TC05 714 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ADAM32Q8TC27 787 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 C2orf15Q8WU43 125 aaKnown RBP6.16□□□□□ -1.42
SCN1A-217ENST00000637988 LCN9Q8WX39 176 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 APOL2Q9BQE5 337 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 ROGDIQ9GZN7 287 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SMURF2Q9HAU4 748 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 OR12D3Q9UGF7 316 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 PHF11Q9UIL8 331 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 GTF3C4Q9UKN8 822 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 SHOC2Q9UQ13 582 aa6.16□□□□□ -1.42
SCN1A-217ENST00000637988 FRMPD4Q14CM0 1322 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms