RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 PDAP1Q13442 181 aaKnown RBP6.18□□□□□ -1.42
VRK3-220ENST00000600259 CLCA4Q14CN2 919 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 KLHL40Q2TBA0 621 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 CCDC14Q49A88 953 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 LRRC73Q5JTD7 316 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 ATXN7L2Q5T6C5 722 aaPredicted RBP6.18□□□□□ -1.42
VRK3-220ENST00000600259 ESRP1Q6NXG1 681 aaKnown RBP6.18□□□□□ -1.42
VRK3-220ENST00000600259 GDPD4Q6W3E5 623 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 LEKR1Q6ZMV7 388 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 USP53Q70EK8 1073 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 PRICKLE2Q7Z3G6 844 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 C17orf82Q86X59 251 aaPredicted RBP6.18□□□□□ -1.42
VRK3-220ENST00000600259 ZFAND4Q86XD8 727 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 LURAP1LQ8IV03 231 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 HID1Q8IV36 788 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 SLITRK4Q8IW52 837 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 FSTL5Q8N475 847 aaPredicted RBP6.18□□□□□ -1.42
VRK3-220ENST00000600259 ARL10Q8N8L6 244 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 NETO2Q8NC67 525 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 TMEM35BQ8NCS4 154 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 PCDH19Q8TAB3 1148 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 RBM15Q96T37 977 aaKnown RBP eCLIP6.18□□□□□ -1.42
VRK3-220ENST00000600259 EPAS1Q99814 870 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 FUCA2Q9BTY2 467 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 APOOQ9BUR5 198 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 NAA15Q9BXJ9 866 aaKnown RBP6.18□□□□□ -1.42
VRK3-220ENST00000600259 CPEB1Q9BZB8 566 aaKnown RBP6.18□□□□□ -1.42
VRK3-220ENST00000600259 SLC13A1Q9BZW2 595 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 TTYH3Q9C0H2 523 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 MAGEH1Q9H213 219 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 OR12D3Q9UGF7 316 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 DNAI1Q9UI46 699 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 HOOK1Q9UJC3 728 aaKnown RBP6.18□□□□□ -1.42
VRK3-220ENST00000600259 APPL1Q9UKG1 709 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 STAP1Q9ULZ2 295 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 COQ6Q9Y2Z9 468 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 PAXBP1Q9Y5B6 917 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 PCDHGA4Q9Y5G9 962 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 USP9XQ93008 2570 aaPredicted RBP6.18□□□□□ -1.42
VRK3-220ENST00000600259 DOPEY2Q9Y3R5 2298 aa6.18□□□□□ -1.42
VRK3-220ENST00000600259 DOCK4Q8N1I0 1966 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 UNC13CQ8NB66 2214 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 RELNP78509 3460 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 PRAMEF33A0A0G2JMD5 474 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 A0A1W2PQC6 194 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 FAM170AA1A519 330 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 TSPAN11A1L157 253 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 CLEC18AA5D8T8 446 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 TMEM202A6NGA9 273 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 TMEM110-MUSTN1A8MSY1 372 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.17□□□□□ -1.42
VRK3-220ENST00000600259 NEMP1O14524 444 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 BUB1BO60566 1050 aaPredicted RBP6.17□□□□□ -1.42
VRK3-220ENST00000600259 PRAMEF10O60809 474 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 GADD45BO75293 160 aaPredicted RBP6.17□□□□□ -1.42
VRK3-220ENST00000600259 TMCC1O94876 653 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 LRIG2O94898 1065 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 RASGRP1O95267 797 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 FGFR1OPO95684 399 aaKnown RBP6.17□□□□□ -1.42
VRK3-220ENST00000600259 RPLP0P05388 317 aaKnown RBP6.17□□□□□ -1.42
VRK3-220ENST00000600259 ALPIP09923 528 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 CYP11B1P15538 503 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 PNLIPP16233 465 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 GM2AP17900 193 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 TRIM23P36406 574 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 MAPKAPK2P49137 400 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 BLKP51451 505 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 BPIFB4P59827 614 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 SRP54P61011 504 aaKnown RBP6.17□□□□□ -1.42
VRK3-220ENST00000600259 NOMO3P69849 1222 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 CYP4F2P78329 520 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 PTP4A2Q12974 167 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 HLTFQ14527 1009 aaKnown RBP eCLIP6.17□□□□□ -1.42
VRK3-220ENST00000600259 INPP5AQ14642 412 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 NFATC4Q14934 902 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 LRRC14Q15048 493 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 IRF4Q15306 451 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 ELOCQ15369 112 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 CYTH1Q15438 398 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 C15orf59Q2T9L4 293 aaPredicted RBP6.17□□□□□ -1.42
VRK3-220ENST00000600259 INO80DQ53TQ3 878 aaPredicted RBP6.17□□□□□ -1.42
VRK3-220ENST00000600259 MIIPQ5JXC2 388 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 CERCAMQ5T4B2 595 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 FAM102AQ5T9C2 384 aaPredicted RBP6.17□□□□□ -1.42
VRK3-220ENST00000600259 ENPP7Q6UWV6 458 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 CLEC18BQ6UXF7 455 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 ZNF574Q6ZN55 896 aaPredicted RBP6.17□□□□□ -1.42
VRK3-220ENST00000600259 ATG14Q6ZNE5 492 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 NOP9Q86U38 636 aaKnown RBP6.17□□□□□ -1.42
VRK3-220ENST00000600259 VASH2Q86V25 355 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 ZSWIM9Q86XI8 627 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 EMC1Q8N766 993 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 PLA2G15Q8NCC3 412 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 CLEC18CQ8NCF0 446 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 OR6C4Q8NGE1 309 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 JOSD2Q8TAC2 188 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 HCAR2Q8TDS4 363 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 RXFP2Q8WXD0 754 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 CPA5Q8WXQ8 436 aa6.17□□□□□ -1.42
VRK3-220ENST00000600259 OR1E3Q8WZA6 343 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms