RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 CASC4Q6P4E1 433 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 RALGPS2Q86X27 583 aaPredicted RBP11.4□□□□□ -0.58
VMP1-207ENST00000588131 ZSWIM9Q86XI8 627 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 PLPP6Q8IY26 295 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 KDM1BQ8NB78 822 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 LPCAT1Q8NF37 534 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 OR2W6PQ8NHA6 318 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 PDCD6IPQ8WUM4 868 aaKnown RBP11.4□□□□□ -0.58
VMP1-207ENST00000588131 UCMAQ8WVF2 138 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 LRRC39Q96DD0 335 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 ZIM3Q96PE6 472 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 TMEM245Q9H330 911 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 ZDHHC6Q9H6R6 413 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 C8orf33Q9H7E9 229 aaPredicted RBP11.4□□□□□ -0.58
VMP1-207ENST00000588131 VPS37BQ9H9H4 285 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 BFARQ9NZS9 450 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 THAP10Q9P2Z0 257 aaPredicted RBP11.4□□□□□ -0.58
VMP1-207ENST00000588131 ZC3H7BQ9UGR2 993 aaKnown RBP11.4□□□□□ -0.58
VMP1-207ENST00000588131 PLA2G4CQ9UP65 541 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 WASF2Q9Y6W5 498 aa11.4□□□□□ -0.58
VMP1-207ENST00000588131 AP3B1O00203 1094 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 HTRA2O43464 458 aaPredicted RBP11.39□□□□□ -0.59
VMP1-207ENST00000588131 SOCS5O75159 536 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 PGLSO95336 258 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 POP4O95707 220 aaKnown RBP11.39□□□□□ -0.59
VMP1-207ENST00000588131 FGF1P05230 155 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 CTSLP07711 333 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 PIRTP0C851 137 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 SRFP11831 508 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 PGAM1P18669 254 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 SLC8A1P32418 973 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 TNFRSF4P43489 277 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 KIR2DL1P43626 348 aaPredicted RBP11.39□□□□□ -0.59
VMP1-207ENST00000588131 RECQLP46063 649 aaPredicted RBP11.39□□□□□ -0.59
VMP1-207ENST00000588131 SEC13P55735 322 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 ZP2Q05996 745 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 QPCTQ16769 361 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 HNRNPA1L2Q32P51 320 aaKnown RBP11.39□□□□□ -0.59
VMP1-207ENST00000588131 TMEM196Q5HYL7 178 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 CFAP58Q5T655 872 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 STEAP4Q687X5 459 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 CES3Q6UWW8 571 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 SERPINA13PQ6UXR4 307 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 UNC5AQ6ZN44 842 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 ADHFE1Q8IWW8 467 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 SUGP1Q8IWZ8 645 aaKnown RBP11.39□□□□□ -0.59
VMP1-207ENST00000588131 PALM2Q8IXS6 379 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 IQCKQ8N0W5 287 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 GRIN3AQ8TCU5 1115 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 RMDN1Q96DB5 314 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 TTC25Q96NG3 672 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 TUBGCP5Q96RT8 1024 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 HEPHQ9BQS7 1158 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 CPEB1Q9BZB8 566 aaKnown RBP11.39□□□□□ -0.59
VMP1-207ENST00000588131 IL22Q9GZX6 179 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 ATP13A3Q9H7F0 1226 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 SLC2A4RGQ9NR83 387 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 CACNA2D2Q9NY47 1150 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 SLC8A2Q9UPR5 921 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 PLAAQ9Y263 795 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 STARD13Q9Y3M8 1113 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 ARIH1Q9Y4X5 557 aaPredicted RBP11.39□□□□□ -0.59
VMP1-207ENST00000588131 PCDHB9Q9Y5E1 797 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 SPO11Q9Y5K1 396 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 NFS1Q9Y697 457 aa11.39□□□□□ -0.59
VMP1-207ENST00000588131 TCF20Q9UGU0 1960 aaKnown RBP11.38□□□□□ -0.59
VMP1-207ENST00000588131 EYSQ5T1H1 3165 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 EDDM13A0A1B0GTR0 161 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 CCDC78A2IDD5 438 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 ANKRD66B4E2M5 251 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 GALR2O43603 387 aaPredicted RBP11.38□□□□□ -0.59
VMP1-207ENST00000588131 SIN3BO75182 1162 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 C1QAP02745 245 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 UGT2B4P06133 528 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 ABHD2P08910 425 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 NUDT17P0C025 328 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 ALADP13716 330 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 HNRNPLP14866 589 aaKnown RBP eCLIP11.38□□□□□ -0.597e-9■■■■■ 28.7
VMP1-207ENST00000588131 TSHRP16473 764 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 CTPS1P17812 591 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 CA4P22748 312 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 NMBRP28336 390 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 SERPINA4P29622 427 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 TIE1P35590 1138 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 WASP42768 502 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 PFKPQ01813 784 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 SEPT6Q14141 434 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 ARSIQ5FYB1 569 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 PCID2Q5JVF3 399 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 C9orf64Q5T6V5 341 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 ARMC12Q5T9G4 340 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 PKN3Q6P5Z2 889 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 GDPD4Q6W3E5 623 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 C3orf62Q6ZUJ4 267 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 NUDT18Q6ZVK8 323 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 MICALCLQ6ZW33 695 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 STK40Q8N2I9 435 aa11.38□□□□□ -0.59
VMP1-207ENST00000588131 ZNF513Q8N8E2 541 aaPredicted RBP11.38□□□□□ -0.59
VMP1-207ENST00000588131 PPHLN1Q8NEY8 458 aaKnown RBP11.38□□□□□ -0.59
VMP1-207ENST00000588131 PIH1D2Q8WWB5 315 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms