RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PCLAFQ15004 111 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 TBR1Q16650 682 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 KRTAP21-3Q3LHN1 58 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 ZNF628Q5EBL2 1059 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 C9orf152Q5JTZ5 239 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 SH2D4BQ5SQS7 431 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 IYDQ6PHW0 289 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 CPLX2Q6PUV4 134 aaKnown RBP6.02□□□□□ -1.45
VPS53-219ENST00000576019 USP51Q70EK9 711 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 ANKRD33Q7Z3H0 272 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 PPP1R42Q7Z4L9 355 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 LCA5Q86VQ0 697 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 ZNF619Q8N2I2 560 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 TMEM199Q8N511 208 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS53-219ENST00000576019 PRPF31Q8WWY3 499 aaKnown RBP6.02□□□□□ -1.45
VPS53-219ENST00000576019 SOCS4Q8WXH5 440 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 CELF1Q92879 486 aaKnown RBP6.02□□□□□ -1.45
VPS53-219ENST00000576019 SMARCE1Q969G3 411 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 PABPC5Q96DU9 382 aaKnown RBP6.02□□□□□ -1.45
VPS53-219ENST00000576019 C5orf34Q96MH7 638 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 TOX2Q96NM4 488 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 CLSTN3Q9BQT9 956 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 PTDSS2Q9BVG9 487 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 DNAI2Q9GZS0 605 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 ST6GALNAC4Q9H4F1 302 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 NRDE2Q9H7Z3 1164 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS53-219ENST00000576019 TPSG1Q9NRR2 321 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 SNX15Q9NRS6 342 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 GIMAP4Q9NUV9 329 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 THAP1Q9NVV9 213 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 FAM30AQ9NZY2 134 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 MARCH4Q9P2E8 410 aaPredicted RBP6.02□□□□□ -1.45
VPS53-219ENST00000576019 DNAJB9Q9UBS3 223 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 OSGIN2Q9Y236 505 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 UBE2J1Q9Y385 318 aaPredicted RBP6.02□□□□□ -1.45
VPS53-219ENST00000576019 PCDHAC2Q9Y5I4 1007 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 RAI2Q9Y5P3 530 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 CELSR3Q9NYQ7 3312 aa6.02□□□□□ -1.45
VPS53-219ENST00000576019 UTYO14607 1347 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 FANCMQ8IYD8 2048 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 COL12A1Q99715 3063 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 A0A1B0GUL7 405 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 A0A1W2PQM1 296 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 ARHGAP10A1A4S6 786 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 GLOD5A6NK44 160 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 C16orf96A6NNT2 1141 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 GOLGA6L6A8MZA4 724 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 CPLX1O14810 134 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 C22orf31O95567 290 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 FTCDO95954 541 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 FGBP02675 491 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 RB1P06400 928 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 FURINP09958 794 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 SPATA31D3P0C874 917 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 CDH2P19022 906 aaPredicted RBP6.01□□□□□ -1.45
VPS53-219ENST00000576019 ITGALP20701 1170 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 CD86P42081 329 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 SLC15A1P46059 708 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 ALDH3A2P51648 485 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 MC2RQ01718 297 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 ZNF844Q08AG5 666 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 MTAPQ13126 283 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 AIMP2Q13155 320 aaKnown RBP6.01□□□□□ -1.45
VPS53-219ENST00000576019 DOC2BQ14184 412 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 KCNB1Q14721 858 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 PPA1Q15181 289 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 ANGPT1Q15389 498 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 PTPN14Q15678 1187 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 CCL14Q16627 93 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 PARP10Q53GL7 1025 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 RAB12Q6IQ22 244 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 KRT80Q6KB66 452 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 PET117Q6UWS5 81 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 C16orf89Q6UX73 402 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 SPATA31D4Q6ZUB0 917 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 USP30Q70CQ3 517 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 RRM2BQ7LG56 351 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 ADGRE4PQ86SQ3 457 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 ADGRA1Q86SQ6 560 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 GLRX5Q86SX6 157 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 METTL23Q86XA0 190 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 IL17RCQ8NAC3 791 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 CHST13Q8NET6 341 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 CADM4Q8NFZ8 388 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 ZFP28Q8NHY6 868 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 FNIP1Q8TF40 1166 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 GDPD5Q8WTR4 605 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 MRPS27Q92552 414 aaKnown RBP6.01□□□□□ -1.45
VPS53-219ENST00000576019 KRT35Q92764 455 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 ZBTB8AQ96BR9 441 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 SAT2Q96F10 170 aaPredicted RBP6.01□□□□□ -1.45
VPS53-219ENST00000576019 MARS2Q96GW9 593 aaKnown RBP6.01□□□□□ -1.45
VPS53-219ENST00000576019 FAR2Q96K12 515 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 FER1L6-AS2Q96M78 137 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 PI4K2AQ9BTU6 479 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 HEMGNQ9BXL5 484 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 CARD11Q9BXL7 1154 aa6.01□□□□□ -1.45
VPS53-219ENST00000576019 FAM129AQ9BZQ8 928 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms