RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PEX5P50542 639 aa21.3■■□□□ 1
VPS53-216ENST00000574029 SUOXP51687 545 aa21.3■■□□□ 1
VPS53-216ENST00000574029 PDX1P52945 283 aa21.3■■□□□ 1
VPS53-216ENST00000574029 PPARDQ03181 441 aa21.3■■□□□ 1
VPS53-216ENST00000574029 VAC14Q08AM6 782 aa21.3■■□□□ 1
VPS53-216ENST00000574029 IRF4Q15306 451 aa21.3■■□□□ 1
VPS53-216ENST00000574029 KRT31Q15323 416 aa21.3■■□□□ 1
VPS53-216ENST00000574029 TAF1BQ53T94 588 aaPredicted RBP21.3■■□□□ 1
VPS53-216ENST00000574029 NETO2Q8NC67 525 aa21.3■■□□□ 1
VPS53-216ENST00000574029 C3orf20Q8ND61 904 aa21.3■■□□□ 1
VPS53-216ENST00000574029 HCAR2Q8TDS4 363 aa21.3■■□□□ 1
VPS53-216ENST00000574029 COL26A1Q96A83 441 aa21.3■■□□□ 1
VPS53-216ENST00000574029 CCDC97Q96F63 343 aaPredicted RBP21.3■■□□□ 1
VPS53-216ENST00000574029 HMCESQ96FZ2 354 aa21.3■■□□□ 1
VPS53-216ENST00000574029 GBP4Q96PP9 640 aa21.3■■□□□ 1
VPS53-216ENST00000574029 CCDC3Q9BQI4 270 aa21.3■■□□□ 1
VPS53-216ENST00000574029 WRAP53Q9BUR4 548 aaKnown RBP21.3■■□□□ 1
VPS53-216ENST00000574029 LMBRD1Q9NUN5 540 aa21.3■■□□□ 1
VPS53-216ENST00000574029 LHX3Q9UBR4 397 aa21.3■■□□□ 1
VPS53-216ENST00000574029 PADI4Q9UM07 663 aa21.3■■□□□ 1
VPS53-216ENST00000574029 PMS2P1A4D2B8 440 aa21.29■■□□□ 1
VPS53-216ENST00000574029 SIGLEC16A6NMB1 481 aa21.29■■□□□ 1
VPS53-216ENST00000574029 WASH4PA8MWX3 477 aa21.29■■□□□ 1
VPS53-216ENST00000574029 RASA4BC9J798 803 aa21.29■■□□□ 1
VPS53-216ENST00000574029 INSIG1O15503 277 aa21.29■■□□□ 1
VPS53-216ENST00000574029 RASA4O43374 803 aa21.29■■□□□ 1
VPS53-216ENST00000574029 CALB1P05937 261 aa21.29■■□□□ 1
VPS53-216ENST00000574029 MLLT3P42568 568 aaPredicted RBP21.29■■□□□ 1
VPS53-216ENST00000574029 BLKP51451 505 aa21.29■■□□□ 1
VPS53-216ENST00000574029 SERINC3Q13530 473 aa21.29■■□□□ 1
VPS53-216ENST00000574029 CYTH1Q15438 398 aa21.29■■□□□ 1
VPS53-216ENST00000574029 CLEC16AQ2KHT3 1053 aa21.29■■□□□ 1
VPS53-216ENST00000574029 PARP15Q460N3 678 aa21.29■■□□□ 1
VPS53-216ENST00000574029 EFHC2Q5JST6 749 aa21.29■■□□□ 1
VPS53-216ENST00000574029 ESRP1Q6NXG1 681 aaKnown RBP21.29■■□□□ 1
VPS53-216ENST00000574029 FSTL5Q8N475 847 aaPredicted RBP21.29■■□□□ 1
VPS53-216ENST00000574029 WDR36Q8NI36 951 aaKnown RBP21.29■■□□□ 1
VPS53-216ENST00000574029 SIK3Q9Y2K2 1263 aa21.29■■□□□ 1
VPS53-216ENST00000574029 KALRNO60229 2985 aa21.28■■□□□ 1
VPS53-216ENST00000574029 TCRBV5S1A1TA0A578 114 aa21.28■■□□□ 1
VPS53-216ENST00000574029 TSPAN11A1L157 253 aa21.28■■□□□ 1
VPS53-216ENST00000574029 TMEM110-MUSTN1A8MSY1 372 aa21.28■■□□□ 1
VPS53-216ENST00000574029 NTN3O00634 580 aaPredicted RBP21.28■■□□□ 1
VPS53-216ENST00000574029 CCP110O43303 1012 aa21.28■■□□□ 1
VPS53-216ENST00000574029 CELA2BP08218 269 aaPredicted RBP21.28■■□□□ 1
VPS53-216ENST00000574029 HK3P52790 923 aa21.28■■□□□ 1
VPS53-216ENST00000574029 ELP6Q0PNE2 266 aa21.28■■□□□ 1
VPS53-216ENST00000574029 SPIDRQ14159 915 aa21.28■■□□□ 1
VPS53-216ENST00000574029 LRRC14Q15048 493 aa21.28■■□□□ 1
VPS53-216ENST00000574029 FKBP15Q5T1M5 1219 aa21.28■■□□□ 1
VPS53-216ENST00000574029 LVRNQ6Q4G3 990 aa21.28■■□□□ 1
VPS53-216ENST00000574029 MON1BQ7L1V2 547 aa21.28■■□□□ 1
VPS53-216ENST00000574029 CLEC14AQ86T13 490 aa21.28■■□□□ 1
VPS53-216ENST00000574029 UMODL1-AS1Q8N2C9 162 aa21.28■■□□□ 1
VPS53-216ENST00000574029 ARL14Q8N4G2 192 aa21.28■■□□□ 1
VPS53-216ENST00000574029 TTC9Q92623 222 aa21.28■■□□□ 1
VPS53-216ENST00000574029 CATSPERBQ9H7T0 1116 aa21.28■■□□□ 1
VPS53-216ENST00000574029 FZD10Q9ULW2 581 aa21.28■■□□□ 1
VPS53-216ENST00000574029 MGAQ8IWI9 3026 aa21.27■■□□□ 1
VPS53-216ENST00000574029 CCDC187A0A096LP49 1063 aa21.27■■□□□ 1
VPS53-216ENST00000574029 PIGNO95427 931 aa21.27■■□□□ 1
VPS53-216ENST00000574029 XPAP23025 273 aaPredicted RBP21.27■■□□□ 1
VPS53-216ENST00000574029 ZNF143P52747 638 aaPredicted RBP21.27■■□□□ 1
VPS53-216ENST00000574029 AIF1P55008 147 aa21.27■■□□□ 1
VPS53-216ENST00000574029 AGERQ15109 404 aa21.27■■□□□ 1
VPS53-216ENST00000574029 ELOCQ15369 112 aa21.27■■□□□ 1
VPS53-216ENST00000574029 UGP2Q16851 508 aa21.27■■□□□ 1
VPS53-216ENST00000574029 KIF26BQ2KJY2 2108 aa21.27■■□□□ 1
VPS53-216ENST00000574029 ALG11Q2TAA5 492 aa21.27■■□□□ 1
VPS53-216ENST00000574029 WSCD2Q2TBF2 565 aa21.27■■□□□ 1
VPS53-216ENST00000574029 SCYL2Q6P3W7 929 aa21.27■■□□□ 1
VPS53-216ENST00000574029 SDR16C5Q8N3Y7 309 aa21.27■■□□□ 1
VPS53-216ENST00000574029 ARL10Q8N8L6 244 aa21.27■■□□□ 1
VPS53-216ENST00000574029 EXOC2Q96KP1 924 aa21.27■■□□□ 1
VPS53-216ENST00000574029 EDEM3Q9BZQ6 932 aa21.27■■□□□ 1
VPS53-216ENST00000574029 COQ6Q9Y2Z9 468 aa21.27■■□□□ 1
VPS53-216ENST00000574029 HELZ2Q9BYK8 2649 aaKnown RBP21.27■■□□□ 1
VPS53-216ENST00000574029 CREB3O43889 395 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 TNFSF15O95150 251 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 TPM2P07951 284 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 ALPIP09923 528 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 C6P13671 934 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 GRM3Q14832 879 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 NFATC4Q14934 902 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 FOXR1Q6PIV2 292 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 DNAAF5Q86Y56 855 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 HID1Q8IV36 788 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 SCG3Q8WXD2 468 aaKnown RBP21.26■□□□□ 0.99
VPS53-216ENST00000574029 TSACCQ96A04 125 aaPredicted RBP21.26■□□□□ 0.99
VPS53-216ENST00000574029 LIN37Q96GY3 246 aaPredicted RBP21.26■□□□□ 0.99
VPS53-216ENST00000574029 NCAPGQ9BPX3 1015 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 SUV39H2Q9H5I1 410 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 PDFQ9HBH1 243 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 PCDH12Q9NPG4 1184 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 GULP1Q9UBP9 304 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 DOLKQ9UPQ8 538 aa21.26■□□□□ 0.99
VPS53-216ENST00000574029 FLNBO75369 2602 aaKnown RBP21.25■□□□□ 0.99
VPS53-216ENST00000574029 K7ENP7 123 aa21.25■□□□□ 0.99
VPS53-216ENST00000574029 FGF10O15520 208 aaPredicted RBP21.25■□□□□ 0.99
VPS53-216ENST00000574029 RASGRP1O95267 797 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms