RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 TRIP6Q15654 476 aaKnown RBP7.57□□□□□ -1.2
NUP88-205ENST00000572809 SLC45A4Q5BKX6 768 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 KCNT1Q5JUK3 1230 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 AGBL4Q5VU57 503 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 PLEKHA7Q6IQ23 1121 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 NEK5Q6P3R8 708 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 C22orf39Q6P5X5 142 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 DPY19L3Q6ZPD9 716 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 TMC6Q7Z403 805 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 DNAAF5Q86Y56 855 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 NAXDQ8IW45 347 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 PCDH20Q8N6Y1 951 aaKnown RBP7.57□□□□□ -1.2
NUP88-205ENST00000572809 CHST14Q8NCH0 376 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 SETD7Q8WTS6 366 aaKnown RBP7.57□□□□□ -1.2
NUP88-205ENST00000572809 CPLX3Q8WVH0 158 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 ISG20Q96AZ6 181 aaKnown RBP7.57□□□□□ -1.2
NUP88-205ENST00000572809 SERAC1Q96JX3 654 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 SLC6A18Q96N87 628 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 CAMK1GQ96NX5 476 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 HEPHQ9BQS7 1158 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 NPHS2Q9NP85 383 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 DYRK4Q9NR20 520 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 AASDHPPTQ9NRN7 309 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 ARHGAP20Q9P2F6 1191 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 PCDHGB2Q9Y5G2 931 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 BZW2Q9Y6E2 419 aaKnown RBP7.57□□□□□ -1.2
NUP88-205ENST00000572809 ASCC3Q8N3C0 2202 aaKnown RBP7.57□□□□□ -1.2
NUP88-205ENST00000572809 NCOR2Q9Y618 2525 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 DOCK4Q8N1I0 1966 aa7.57□□□□□ -1.2
NUP88-205ENST00000572809 A0A1W2PQJ5 194 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 WASH4PA8MWX3 477 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 H0Y8X5 98 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 TLR4O00206 839 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 RNF103O00237 685 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 WNT9AO14904 365 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 LATO43561 262 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 BUB1O43683 1085 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 DYRK3O43781 588 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 MAGEC1O60732 1142 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 MMP20O60882 483 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 LEFTY1O75610 366 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 RNF8O76064 485 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 TRIM16O95361 564 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 WNT1P04628 370 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 MAT2AP31153 395 aaKnown RBP7.56□□□□□ -1.2
NUP88-205ENST00000572809 NUDT1P36639 197 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 PBX1P40424 430 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 YBEYP58557 167 aaPredicted RBP7.56□□□□□ -1.2
NUP88-205ENST00000572809 TAS2R38P59533 333 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 STAT4Q14765 748 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 ZNF423Q2M1K9 1284 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 ZSCAN23Q3MJ62 389 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 PRAMEF14Q5SWL7 426 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 ERMARDQ5T6L9 678 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 PIP5KL1Q5T9C9 394 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 E4F1Q66K89 784 aaPredicted RBP7.56□□□□□ -1.2
NUP88-205ENST00000572809 NAPEPLDQ6IQ20 393 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 NXPE4Q6UWF7 544 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 LAYNQ6UX15 382 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 LEKR1Q6ZMV7 388 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 ERN2Q76MJ5 926 aaKnown RBP7.56□□□□□ -1.2
NUP88-205ENST00000572809 TRIM69Q86WT6 500 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 ZNF354CQ86Y25 554 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 RYBPQ8N488 228 aaPredicted RBP7.56□□□□□ -1.2
NUP88-205ENST00000572809 RTL3Q8N8U3 475 aaKnown RBP7.56□□□□□ -1.2
NUP88-205ENST00000572809 MFSD2AQ8NA29 543 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 OR13H1Q8NG92 308 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 GRIN3AQ8TCU5 1115 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 SYN2Q92777 582 aaPredicted RBP7.56□□□□□ -1.2
NUP88-205ENST00000572809 ARRDC3Q96B67 414 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 IQCDQ96DY2 449 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 PPP1R16AQ96I34 528 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.56□□□□□ -1.2
NUP88-205ENST00000572809 HDAC8Q9BY41 377 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 ISCUQ9H1K1 167 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 CATSPERBQ9H7T0 1116 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 PREBQ9HCU5 417 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 MRPL47Q9HD33 250 aaKnown RBP7.56□□□□□ -1.2
NUP88-205ENST00000572809 DONSONQ9NYP3 566 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 MYO1AQ9UBC5 1043 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 HECAQ9UBI9 543 aaPredicted RBP7.56□□□□□ -1.2
NUP88-205ENST00000572809 CNOT8Q9UFF9 292 aaKnown RBP7.56□□□□□ -1.2
NUP88-205ENST00000572809 PCOLCE2Q9UKZ9 415 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 CAPN11Q9UMQ6 739 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 DMTF1Q9Y222 760 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 ACTL7AQ9Y615 435 aa7.56□□□□□ -1.2
NUP88-205ENST00000572809 PCNX2A6NKB5 2137 aa7.55□□□□□ -1.2
NUP88-205ENST00000572809 CACNA1EQ15878 2313 aa7.55□□□□□ -1.2
NUP88-205ENST00000572809 A0A1B0GTQ1 180 aa7.55□□□□□ -1.2
NUP88-205ENST00000572809 A0A1W2PR77 199 aa7.55□□□□□ -1.2
NUP88-205ENST00000572809 ZSCAN5CA6NGD5 496 aaPredicted RBP7.55□□□□□ -1.2
NUP88-205ENST00000572809 EIF3CLB5ME19 914 aaKnown RBP7.55□□□□□ -1.2
NUP88-205ENST00000572809 RASA4BC9J798 803 aa7.55□□□□□ -1.2
NUP88-205ENST00000572809 PRAMEF26H0Y7S4 382 aa7.55□□□□□ -1.2
NUP88-205ENST00000572809 SLC31A1O15431 190 aa7.55□□□□□ -1.2
NUP88-205ENST00000572809 FLRT2O43155 660 aa7.55□□□□□ -1.2
NUP88-205ENST00000572809 DAPK3O43293 454 aa7.55□□□□□ -1.2
NUP88-205ENST00000572809 RASA4O43374 803 aa7.55□□□□□ -1.2
NUP88-205ENST00000572809 PCDHGA12O60330 932 aa7.55□□□□□ -1.2
NUP88-205ENST00000572809 RNGTTO60942 597 aaKnown RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms