RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 KRT81Q14533 505 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 RFTN1Q14699 578 aaPredicted RBP18.56■□□□□ 0.56
CLN3-237ENST00000569030 LBRQ14739 615 aaKnown RBP18.56■□□□□ 0.56
CLN3-237ENST00000569030 GRM3Q14832 879 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 ST3GAL2Q16842 350 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 UGP2Q16851 508 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 CCDC157Q569K6 752 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 ZNF542PQ5EBM4 170 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 TPRG1LQ5T0D9 272 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 KYAT3Q6YP21 454 aaKnown RBP18.56■□□□□ 0.56
CLN3-237ENST00000569030 ZSCAN30Q86W11 494 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 FAM174AQ8TBP5 190 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 CNDP2Q96KP4 475 aaKnown RBP18.56■□□□□ 0.56
CLN3-237ENST00000569030 ZNF641Q96N77 438 aaPredicted RBP18.56■□□□□ 0.56
CLN3-237ENST00000569030 TUBGCP5Q96RT8 1024 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 NHEJ1Q9H9Q4 299 aaPredicted RBP18.56■□□□□ 0.56
CLN3-237ENST00000569030 PCDH12Q9NPG4 1184 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 SPTLC3Q9NUV7 552 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 UCKL1Q9NWZ5 548 aa18.56■□□□□ 0.56
CLN3-237ENST00000569030 ENC1O14682 589 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 FPGTO14772 594 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 AKR1B10O60218 316 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 PRKCGP05129 697 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 PROS1P07225 676 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 TPM1P09493 284 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 DGKAP23743 735 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 SCNN1BP51168 640 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 DNAJC3Q13217 504 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 DPYSL3Q14195 570 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 FZD2Q14332 565 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 HADHQ16836 314 aaKnown RBP18.55■□□□□ 0.56
CLN3-237ENST00000569030 TSR1Q2NL82 804 aaKnown RBP18.55■□□□□ 0.56
CLN3-237ENST00000569030 TMEM52BQ4KMG9 183 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 MARCH9Q86YJ5 346 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 DCP2Q8IU60 420 aaKnown RBP18.55■□□□□ 0.56
CLN3-237ENST00000569030 PGBD5Q8N414 524 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 CXorf40AQ8TE69 158 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 ZNF599Q96NL3 588 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 PSKH2Q96QS6 385 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 MBNL1Q9NR56 388 aaKnown RBP18.55■□□□□ 0.56
CLN3-237ENST00000569030 SEPT3Q9UH03 358 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 COQ6Q9Y2Z9 468 aa18.55■□□□□ 0.56
CLN3-237ENST00000569030 DSPP15924 2871 aaKnown RBP18.54■□□□□ 0.56
CLN3-237ENST00000569030 SPTY2D1-AS1A0A0U1RR47 76 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 TRIM38O00635 465 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 RIOK3O14730 519 aaKnown RBP18.54■□□□□ 0.56
CLN3-237ENST00000569030 TM7SF2O76062 418 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 TMEM253P0C7T8 217 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 XPAP23025 273 aaPredicted RBP18.54■□□□□ 0.56
CLN3-237ENST00000569030 IGFALSP35858 605 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 GJC1P36383 396 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 RABIFP47224 123 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 SUOXP51687 545 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 PFN3P60673 137 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 TMCO4Q5TGY1 634 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 BRAT1Q6PJG6 821 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 DENND6BQ8NEG7 585 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 PCDH19Q8TAB3 1148 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 SLC35G2Q8TBE7 412 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 ECHDC3Q96DC8 303 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 ATP13A3Q9H7F0 1226 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 RCOR3Q9P2K3 495 aaPredicted RBP18.54■□□□□ 0.56
CLN3-237ENST00000569030 KLF15Q9UIH9 416 aa18.54■□□□□ 0.56
CLN3-237ENST00000569030 CHD6Q8TD26 2715 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 TMEM110-MUSTN1A8MSY1 372 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 PIAS2O75928 621 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 GIMD1P0DJR0 217 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 SERPINA4P29622 427 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 ELP6Q0PNE2 266 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 PDE1CQ14123 709 aaPredicted RBP18.53■□□□□ 0.56
CLN3-237ENST00000569030 SARM1Q6SZW1 724 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 CCNI2Q6ZMN8 369 aaPredicted RBP18.53■□□□□ 0.56
CLN3-237ENST00000569030 TMPRSS7Q7RTY8 843 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 TP53I13Q8NBR0 393 aaPredicted RBP18.53■□□□□ 0.56
CLN3-237ENST00000569030 KCTD6Q8NC69 237 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 IFT43Q96FT9 208 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 CCDC42Q96M95 316 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 DNAJC28Q9NX36 388 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 ASXL3Q9C0F0 2248 aa18.53■□□□□ 0.56
CLN3-237ENST00000569030 AKR1B15C9JRZ8 316 aaPredicted RBP18.52■□□□□ 0.56
CLN3-237ENST00000569030 TRAFD1O14545 582 aaPredicted RBP18.52■□□□□ 0.56
CLN3-237ENST00000569030 SIGLEC6O43699 453 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 MFSD11O43934 449 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 CR2P20023 1033 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 SERPINB6P35237 376 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 MMP12P39900 470 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 RENBPP51606 427 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 BCL2L1Q07817 233 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 MESDQ14696 234 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 ANKRD20A8PQ5CZ79 823 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 CFAP58Q5T655 872 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 DHRS13Q6UX07 377 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 ATPAF2Q8N5M1 289 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 TRIM5Q9C035 493 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 ATP8A1Q9Y2Q0 1164 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 LRP4O75096 1905 aa18.52■□□□□ 0.56
CLN3-237ENST00000569030 FFAR2O15552 330 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 MAP3K6O95382 1288 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 CSF2P04141 144 aa18.51■□□□□ 0.55
CLN3-237ENST00000569030 C6P13671 934 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms