RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 ACTL7AQ9Y615 435 aa18.03■□□□□ 0.48
TSPAN3-208ENST00000560514 FLNCQ14315 2725 aa18.03■□□□□ 0.48
TSPAN3-208ENST00000560514 CXorf51AA0A1B0GTR3 108 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 C9orf172C9J069 976 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 GNA14O95837 355 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 TFE3P19532 575 aaPredicted RBP18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 CCR10P46092 362 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 POLE2P56282 527 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 PTK2Q05397 1052 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 NFATC4Q14934 902 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 NCAPHQ15003 741 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 IGFBP7Q16270 282 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 MYLK3Q32MK0 819 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 OTUD1Q5VV17 481 aaPredicted RBP18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 KLHL10Q6JEL2 608 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 GDPD4Q6W3E5 623 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 IL22RA1Q8N6P7 574 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 GPR156Q8NFN8 814 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 PGAP3Q96FM1 320 aaPredicted RBP18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 HAPLN3Q96S86 360 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 B3GNT4Q9C0J1 378 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 TMPRSS4Q9NRS4 437 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 TUBD1Q9UJT1 453 aa18.02■□□□□ 0.48
TSPAN3-208ENST00000560514 LRRK2Q5S007 2527 aa18.02■□□□□ 0.47
TSPAN3-208ENST00000560514 BICDL2A1A5D9 508 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 I6L893 689 aaPredicted RBP18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 PNLIPP16233 465 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 CASRP41180 1078 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 FOXK1P85037 733 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 SLC25A52Q3SY17 297 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 SPRED1Q7Z699 444 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 TAF8Q7Z7C8 310 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 FAM26EQ8N5C1 309 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 FAM46DQ8NEK8 389 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 ARHGEF2Q92974 986 aaKnown RBP18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 TBCBQ99426 244 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 SLC12A9Q9BXP2 914 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 LRIT1Q9P2V4 623 aa18.01■□□□□ 0.47
TSPAN3-208ENST00000560514 NBASA2RRP1 2371 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18■□□□□ 0.47
TSPAN3-208ENST00000560514 ZW10O43264 779 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 ACVRL1P37023 503 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 ELP6Q0PNE2 266 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 PTPN20Q4JDL3 420 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 CERCAMQ5T4B2 595 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 ISM2Q6H9L7 571 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 PIM3Q86V86 326 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 ZNF354CQ86Y25 554 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 TRIM59Q8IWR1 403 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 GPBAR1Q8TDU6 330 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 WDR92Q96MX6 357 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 GDAP1L1Q96MZ0 367 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 CATSPER2Q96P56 530 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 APOOQ9BUR5 198 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 PDCL3Q9H2J4 239 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 PPARGC1AQ9UBK2 798 aaKnown RBP18■□□□□ 0.47
TSPAN3-208ENST00000560514 MAN2B2Q9Y2E5 1009 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 LRP4O75096 1905 aa18■□□□□ 0.47
TSPAN3-208ENST00000560514 SDK2Q58EX2 2172 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 BECN2A8MW95 431 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 B4DGG1 531 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 CD160O95971 181 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 INPP5AQ14642 412 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 C14orf28Q4W4Y0 310 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 ATXN7L2Q5T6C5 722 aaPredicted RBP17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 RWDD4Q6NW29 188 aaKnown RBP17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 GJB7Q6PEY0 223 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 FOXR2Q6PJQ5 311 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 SLITRK4Q8IW52 837 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 NELFBQ8WX92 580 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 NT5C3BQ969T7 300 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 RBM15Q96T37 977 aaKnown RBP eCLIP17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 CRACR2AQ9BSW2 395 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 SEMA6CQ9H3T2 930 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 DPEP2Q9H4A9 486 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 LRRC4CQ9HCJ2 640 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 ZNF212Q9UDV6 495 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 COQ6Q9Y2Z9 468 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 OR1A2Q9Y585 309 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 LRRK1Q38SD2 2015 aa17.99■□□□□ 0.47
TSPAN3-208ENST00000560514 NUDT21O43809 227 aaKnown RBP17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 CPNE6O95741 557 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 IGSF6O95976 241 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 SUOXP51687 545 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 C16orf72Q14CZ0 275 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 WSCD2Q2TBF2 565 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 FAM102AQ5T9C2 384 aaPredicted RBP17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 TTI2Q6NXR4 508 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 TRIM65Q6PJ69 517 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 LEKR1Q6ZMV7 388 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 CCDC112Q8NEF3 446 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 NKD1Q969G9 470 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 TAAR9Q96RI9 348 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 NCAPGQ9BPX3 1015 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 DNAI1Q9UI46 699 aa17.98■□□□□ 0.47
TSPAN3-208ENST00000560514 RELNP78509 3460 aa17.97■□□□□ 0.47
TSPAN3-208ENST00000560514 TEX15Q9BXT5 2789 aa17.97■□□□□ 0.47
TSPAN3-208ENST00000560514 SPTAN1Q13813 2472 aaKnown RBP17.97■□□□□ 0.47
TSPAN3-208ENST00000560514 PCCBP05166 539 aa17.97■□□□□ 0.47
TSPAN3-208ENST00000560514 TIMP2P16035 220 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms