RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PCDH8O95206 1070 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 TGM1P22735 817 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 PTPN3P26045 913 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 GRIA4P48058 902 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 AFF3P51826 1226 aaKnown RBP13.11□□□□□ -0.31
NEDD8-208ENST00000560427 RPL26P61254 145 aaKnown RBP13.11□□□□□ -0.31
NEDD8-208ENST00000560427 PPP2CBP62714 309 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 PPP2CAP67775 309 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 OTUD4Q01804 1114 aaKnown RBP13.11□□□□□ -0.31
NEDD8-208ENST00000560427 ITKQ08881 620 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 TEAD4Q15561 434 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 TMEM259Q4ZIN3 620 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 TRIM61Q5EBN2 209 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 NAPEPLDQ6IQ20 393 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 PRR23CQ6ZRP0 262 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 ZC3H18Q86VM9 953 aaKnown RBP13.11□□□□□ -0.31
NEDD8-208ENST00000560427 ABCA7Q8IZY2 2146 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 CNTD1Q8N815 330 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 C12orf50Q8NA57 414 aaPredicted RBP13.11□□□□□ -0.31
NEDD8-208ENST00000560427 C1orf216Q8TAB5 229 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 ARRDC2Q8TBH0 407 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 HTR3CQ8WXA8 447 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 SKA1Q96BD8 255 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 ORAI3Q9BRQ5 295 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 HERPUD2Q9BSE4 406 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 NUSAP1Q9BXS6 441 aaKnown RBP13.11□□□□□ -0.31
NEDD8-208ENST00000560427 TDRD1Q9BXT4 1180 aaKnown RBP13.11□□□□□ -0.31
NEDD8-208ENST00000560427 ZDHHC5Q9C0B5 715 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 MIR1-1HGQ9H1L0 117 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 PARD6AQ9NPB6 346 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 TMEM74BQ9NUR3 256 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 EIF2B4Q9UI10 523 aaKnown RBP13.11□□□□□ -0.31
NEDD8-208ENST00000560427 TRHDEQ9UKU6 1024 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 SLC6A14Q9UN76 642 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 RPL26L1Q9UNX3 145 aaKnown RBP13.11□□□□□ -0.31
NEDD8-208ENST00000560427 TTLL3Q9Y4R7 772 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 GVINP1Q7Z2Y8 2422 aa13.11□□□□□ -0.31
NEDD8-208ENST00000560427 ATXN2Q99700 1313 aaKnown RBP13.11□□□□□ -0.31
NEDD8-208ENST00000560427 RIF1Q5UIP0 2472 aaKnown RBP13.1□□□□□ -0.31
NEDD8-208ENST00000560427 A0A1W2PQU0 124 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 PRAMEF26H0Y7S4 382 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 H7C0C1 242 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 KCNK3O14649 394 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 RIOK3O14730 519 aaKnown RBP13.1□□□□□ -0.31
NEDD8-208ENST00000560427 SPINT1O43278 529 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 FZD6O60353 706 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 GJB3O75712 270 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 STK10O94804 968 aaKnown RBP13.1□□□□□ -0.31
NEDD8-208ENST00000560427 PGLSO95336 258 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 CPP00450 1065 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 RBP3P10745 1247 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 TIMP2P16035 220 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 MMP12P39900 470 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 ATP5OP48047 213 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 EIF3EP60228 445 aaKnown RBP13.1□□□□□ -0.31
NEDD8-208ENST00000560427 RACK1P63244 317 aaKnown RBP13.1□□□□□ -0.31
NEDD8-208ENST00000560427 DSC2Q02487 901 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 WASHC5Q12768 1159 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 OVGP1Q12889 678 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 TRAF2Q12933 501 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 ZNF284Q2VY69 593 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 TMEM52BQ4KMG9 183 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 ARMC12Q5T9G4 340 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 AADACL2Q6P093 401 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 SLC13A5Q86YT5 568 aaPredicted RBP13.1□□□□□ -0.31
NEDD8-208ENST00000560427 NDUFAF2Q8N183 169 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 ZCCHC9Q8N567 271 aaKnown RBP13.1□□□□□ -0.31
NEDD8-208ENST00000560427 DCLK2Q8N568 766 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 DENND6BQ8NEG7 585 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 FAM174AQ8TBP5 190 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 CXorf40AQ8TE69 158 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 MAIP1Q8WWC4 291 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 IMP4Q96G21 291 aaKnown RBP13.1□□□□□ -0.31
NEDD8-208ENST00000560427 TEKT5Q96M29 485 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 C1QTNF7Q9BXJ2 289 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 TLR10Q9BXR5 811 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 SLC25A51Q9H1U9 297 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 CAPN10Q9HC96 672 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 PCDH12Q9NPG4 1184 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 SEPT10Q9P0V9 454 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 KLHL8Q9P2G9 620 aaPredicted RBP13.1□□□□□ -0.31
NEDD8-208ENST00000560427 DNPEPQ9ULA0 475 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 PHTF1Q9UMS5 762 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 PCDHGC4Q9Y5F7 938 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 RAI2Q9Y5P3 530 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 FAM186AA6NE01 2351 aa13.1□□□□□ -0.31
NEDD8-208ENST00000560427 EP300Q09472 2414 aaPredicted RBP13.09□□□□□ -0.31
NEDD8-208ENST00000560427 CFIP05156 583 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 SYPP08247 313 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 HNRNPA2B1P22626 353 aaKnown RBP13.09□□□□□ -0.31
NEDD8-208ENST00000560427 MAOBP27338 520 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 AKT2P31751 481 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 SKOR1P84550 965 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 ARHGAP8P85298 464 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 ITPRIPL1Q6GPH6 555 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 IL27RAQ6UWB1 636 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 USP45Q70EL2 814 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 DPPA4Q7L190 304 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 IQCHQ86VS3 1027 aa13.09□□□□□ -0.31
NEDD8-208ENST00000560427 ZSWIM9Q86XI8 627 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms