RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 FBXO39Q8N4B4 442 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 RTL3Q8N8U3 475 aaKnown RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 TP53I13Q8NBR0 393 aaPredicted RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 SLC30A5Q8TAD4 765 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 FAM172AQ8WUF8 416 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 TTC9Q92623 222 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 LIN37Q96GY3 246 aaPredicted RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 TMEM74Q96NL1 305 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 GFM1Q96RP9 751 aaKnown RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 CCNL2Q96S94 520 aaPredicted RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 C11orf70Q9BRQ4 267 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 WRAP53Q9BUR4 548 aaKnown RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 SELENOOQ9BVL4 669 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 EDEM3Q9BZQ6 932 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 CLPBQ9H078 707 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 CATSPERBQ9H7T0 1116 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 MBNL1Q9NR56 388 aaKnown RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 ADAM22Q9P0K1 906 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 NOCTQ9UK39 431 aaKnown RBP9.27□□□□□ -0.93
HDDC3-204ENST00000559834 DAAM1Q9Y4D1 1078 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 PCDHGA7Q9Y5G6 932 aa9.27□□□□□ -0.93
HDDC3-204ENST00000559834 CELSR3Q9NYQ7 3312 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 A0A1W2PNU3 283 aaPredicted RBP9.26□□□□□ -0.93
HDDC3-204ENST00000559834 SIGLEC16A6NMB1 481 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 RASA4BC9J798 803 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 RASA4O43374 803 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 CALB1P05937 261 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 GPD1P21695 349 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 RFC1P35251 1148 aaPredicted RBP9.26□□□□□ -0.93
HDDC3-204ENST00000559834 SOX5P35711 763 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 STAT1P42224 750 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 AIF1P55008 147 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 INHBCP55103 352 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 HDAC4P56524 1084 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 SRP54P61011 504 aaKnown RBP9.26□□□□□ -0.93
HDDC3-204ENST00000559834 FMO1Q01740 532 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 NFATC4Q14934 902 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 SYCP1Q15431 976 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 UGP2Q16851 508 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 WSCD2Q2TBF2 565 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 DPCR1Q3MIW9 517 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 PARP15Q460N3 678 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 RAB6CQ53S08 254 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 LRRC73Q5JTD7 316 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 FKBP15Q5T1M5 1219 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 SCYL2Q6P3W7 929 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 RAB11FIP2Q7L804 512 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 DNAAF5Q86Y56 855 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 CCDC185Q8N715 623 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 JOSD2Q8TAC2 188 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 SLC20A1Q8WUM9 679 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 TSACCQ96A04 125 aaPredicted RBP9.26□□□□□ -0.93
HDDC3-204ENST00000559834 COL26A1Q96A83 441 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 TMEM159Q96B96 161 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 HMCESQ96FZ2 354 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 ZNF641Q96N77 438 aaPredicted RBP9.26□□□□□ -0.93
HDDC3-204ENST00000559834 APOOQ9BUR5 198 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 MAGEB5Q9BZ81 275 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 RAB6CQ9H0N0 254 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 CLSTN2Q9H4D0 955 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 SUV39H2Q9H5I1 410 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 EPB41L5Q9HCM4 733 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 SAMSN1Q9NSI8 373 aaKnown RBP9.26□□□□□ -0.93
HDDC3-204ENST00000559834 WDR70Q9NW82 654 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 SIRPGQ9P1W8 387 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 KLQ9UEF7 1012 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 GPR34Q9UPC5 381 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 RP1P56715 2156 aa9.26□□□□□ -0.93
HDDC3-204ENST00000559834 COL6A6A6NMZ7 2263 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 CFAP69A5D8W1 941 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 WASH4PA8MWX3 477 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 FGF10O15520 208 aaPredicted RBP9.25□□□□□ -0.93
HDDC3-204ENST00000559834 CREB3O43889 395 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 RPLP0P05388 317 aaKnown RBP9.25□□□□□ -0.93
HDDC3-204ENST00000559834 JMJD7P0C870 316 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 UNGP13051 313 aaPredicted RBP9.25□□□□□ -0.93
HDDC3-204ENST00000559834 PNLIPP16233 465 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 CHRNB2P17787 502 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 ITIH2P19823 946 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 KELP23276 732 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 SLC5A2P31639 672 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 HTR7P34969 479 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 UGT1A5P35504 534 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 GSCP56915 257 aaPredicted RBP9.25□□□□□ -0.93
HDDC3-204ENST00000559834 POLR2FP61218 127 aaKnown RBP9.25□□□□□ -0.93
HDDC3-204ENST00000559834 POLR2LP62875 67 aaKnown RBP9.25□□□□□ -0.93
HDDC3-204ENST00000559834 CCL7P80098 99 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 CLN3Q13286 438 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 MTM1Q13496 603 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 SERINC3Q13530 473 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 INPP5AQ14642 412 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 AGERQ15109 404 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 IRF4Q15306 451 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 CYTH1Q15438 398 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 ALG11Q2TAA5 492 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 KIAA1614Q5VZ46 1190 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 BRAT1Q6PJG6 821 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 WDR59Q6PJI9 974 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 USP53Q70EK8 1073 aa9.25□□□□□ -0.93
HDDC3-204ENST00000559834 PHF13Q86YI8 300 aaPredicted RBP9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms