RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SAT1P21673 171 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 ATP5F1P24539 256 aaPredicted RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 MPSTP25325 297 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 ARRB2P32121 409 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 PPARGP37231 505 aaPredicted RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 SLC26A3P40879 764 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 MAPKAPK2P49137 400 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 FLT3LGP49771 235 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 KPNA1P52294 538 aaPredicted RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 RPL26P61254 145 aaKnown RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 MPP1Q00013 466 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 SLC25A3Q00325 362 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 TBL3Q12788 808 aaKnown RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 SMARCB1Q12824 385 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 USP4Q13107 963 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 ITGA7Q13683 1181 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 TRIP4Q15650 581 aaPredicted RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 PSMD5Q16401 504 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 PARP15Q460N3 678 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 SLC9B1Q4ZJI4 515 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 TSTD2Q5T7W7 516 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 PIK3R6Q5UE93 754 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 MARC1Q5VT66 337 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 ZNF470Q6ECI4 717 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 CCSAPQ6IQ19 270 aaPredicted RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 ZNF280DQ6N043 979 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 NEPROQ6NW34 567 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 ESRP1Q6NXG1 681 aaKnown RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 PGM2L1Q6PCE3 622 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 SLC24A5Q71RS6 500 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 SAPCD2Q86UD0 394 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 SLC22A9Q8IVM8 553 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 CENPLQ8N0S6 344 aaPredicted RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 DEPDC4Q8N2C3 294 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 FBXW8Q8N3Y1 598 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 FSTL5Q8N475 847 aaPredicted RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 POU5F2Q8N7G0 328 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 FBXO27Q8NI29 283 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 BTN2A3PQ96KV6 586 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 NR1H4Q96RI1 486 aaPredicted RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 FTHL17Q9BXU8 183 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 OXCT2Q9BYC2 517 aaPredicted RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 NMUR1Q9HB89 426 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 S100A14Q9HCY8 104 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 ATP13A1Q9HD20 1204 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 MRPL40Q9NQ50 206 aaKnown RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 IL37Q9NZH6 218 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 HACD3Q9P035 362 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 CPSF2Q9P2I0 782 aaKnown RBP7.33□□□□□ -1.24
VPS13C-206ENST00000558338 NUP205Q92621 2012 aa7.33□□□□□ -1.24
VPS13C-206ENST00000558338 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 FAM92AA1XBS5 289 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 TARM1B6A8C7 271 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 E9PBE3 544 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 GOLGA8TH3BQL2 631 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 KLHL41O60662 606 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 TADA2AO75478 443 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 PENKP01210 267 aaPredicted RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 LTA4HP09960 611 aaKnown RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 PIK3R1P27986 724 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 CTGFP29279 349 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 AVPR1AP37288 418 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 ABCG1P45844 678 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 TM4SF4P48230 202 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 LEPRP48357 1165 aaKnown RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 MTTPP55157 894 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 YBEYP58557 167 aaPredicted RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 RING1Q06587 406 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 CACNB2Q08289 660 aaPredicted RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 IL10RBQ08334 325 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 MSLNQ13421 630 aaPredicted RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 MAPRE2Q15555 327 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 SLC14A2Q15849 920 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 CNGA3Q16281 694 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 ARL13AQ5H913 290 aaPredicted RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 VWA5B1Q5TIE3 1220 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 CAPRIN2Q6IMN6 1127 aaKnown RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 ANO7Q6IWH7 933 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 FAM45BPQ6NSW5 357 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 DHDDSQ86SQ9 333 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 DENND6AQ8IWF6 608 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 COLGALT2Q8IYK4 626 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 DEFB107AQ8IZN7 70 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 BBS5Q8N3I7 341 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 TEX26Q8N6G2 289 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 FAM45AQ8TCE6 357 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 NRG4Q8WWG1 115 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 CLPTM1LQ96KA5 538 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 PGLYRP2Q96PD5 576 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 CDK5RAP1Q96SZ6 601 aaKnown RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 TRMOQ9BU70 441 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 MFSD1Q9H3U5 465 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 NT5MQ9NPB1 228 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 TLR8Q9NR97 1041 aaKnown RBP7.32□□□□□ -1.24
VPS13C-206ENST00000558338 SCOCQ9UIL1 159 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 VPS28Q9UK41 221 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 SSX2IPQ9Y2D8 614 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 CCDC78A2IDD5 438 aa7.32□□□□□ -1.24
VPS13C-206ENST00000558338 MAGEA13PA6NCF6 341 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms