RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 CCDC186Q7Z3E2 898 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 AACSQ86V21 672 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 WDR5BQ86VZ2 330 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 CCDC25Q86WR0 208 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 LURAP1LQ8IV03 231 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 C16orf71Q8IYS4 520 aaPredicted RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 CADM3Q8N126 398 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 MINDY1Q8N5J2 469 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 AFAP1L1Q8TED9 768 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SH3RF3Q8TEJ3 882 aaPredicted RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 TMEM170AQ8WVE7 144 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 ZFPM2Q8WW38 1151 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 MRPS27Q92552 414 aaKnown RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 LENG9Q96B70 501 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 TMCO6Q96DC7 493 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SIPA1Q96FS4 1042 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 CCDC34Q96HJ3 373 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 GBP5Q96PP8 586 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 OR2A14Q96R47 310 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 FCRL5Q96RD9 977 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 FNBP1Q96RU3 617 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 TKTL2Q9H0I9 626 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 HRH4Q9H3N8 390 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 ST6GALNAC4Q9H4F1 302 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 RETREG1Q9H6L5 497 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 ZNF703Q9H7S9 590 aaPredicted RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 XAB2Q9HCS7 855 aaKnown RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 ZNF304Q9HCX3 659 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 ARHGEF38Q9NXL2 777 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SELENONQ9NZV5 590 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 SH3BP4Q9P0V3 963 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 RASAL2Q9UJF2 1139 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 CARD8Q9Y2G2 431 aa3.26□□□□□ -1.89
TRAV28-201ENST00000557548 ZFP37Q9Y6Q3 630 aaPredicted RBP3.26□□□□□ -1.89
TRAV28-201ENST00000557548 MAST3O60307 1309 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 AOX1Q06278 1338 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 NISCHQ9Y2I1 1504 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 CYP2D7A0A087X1C5 515 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 FAM237AA0A1B0GTK4 181 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TCRBV5S1A1TA0A578 114 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TRBC2A0A5B9 178 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 CCDC151A5D8V7 595 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TRIM64A6NGJ6 449 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TRIM64BA6NI03 449 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 A6NL46 340 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 HSPB2A8KAH6 182 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 FAM157AC9JC47 383 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 SEC14L5O43304 696 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 MITFO75030 526 aaPredicted RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 SLU7O95391 586 aaKnown RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 C22orf31O95567 290 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 NFATC1O95644 943 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 MT-CYBP00156 380 aaPredicted RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 FSHBP01225 129 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 HOXB5P09067 269 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 C6P13671 934 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 PTPN2P17706 415 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TRIM21P19474 475 aaKnown RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 YWHAQP27348 245 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 CHRNA5P30532 468 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 HOXA13P31271 388 aaPredicted RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TLX1P31314 330 aaPredicted RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 PTGS2P35354 604 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 BLOC1S1P78537 153 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 ACSM2AQ08AH3 577 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 GRAPQ13588 217 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 SNTB1Q13884 538 aaKnown RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 BAATQ14032 418 aaPredicted RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 DRAP1Q14919 205 aaPredicted RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 HSPB2Q16082 182 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 SYTL3Q4VX76 610 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 CCDC92Q53HC0 331 aaPredicted RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TMEM63BQ5T3F8 832 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 VWA5B1Q5TIE3 1220 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 ACSM2BQ68CK6 577 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 HIST2H2BCQ6DN03 193 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 HIST2H2BDQ6DRA6 164 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 HMBOX1Q6NT76 420 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TRAT1Q6PIZ9 186 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 SLC2A7Q6PXP3 512 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TBC1D26Q86UD7 250 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TRIM74Q86UV6 250 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 TRIM73Q86UV7 250 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 ZSCAN30Q86W11 494 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 RASAL3Q86YV0 1011 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 UEVLDQ8IX04 471 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 CCDC13Q8IYE1 715 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 LCORLQ8N3X6 602 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 FAM47BQ8NA70 645 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 HJURPQ8NCD3 748 aaPredicted RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 RASSF8Q8NHQ8 419 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 GSDMBQ8TAX9 411 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 PIGKQ92643 395 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 KAT2AQ92830 837 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 HAS1Q92839 578 aa3.25□□□□□ -1.89
TRAV28-201ENST00000557548 ATOH1Q92858 354 aaPredicted RBP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 ZNF622Q969S3 477 aaKnown RBP eCLIP3.25□□□□□ -1.89
TRAV28-201ENST00000557548 ZC3HAV1LQ96H79 300 aaKnown RBP3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms