RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 GPKOWQ92917 476 aaPredicted RBP eCLIP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 ZNF512BQ96KM6 892 aaPredicted RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 TNIP3Q96KP6 325 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 ANKHQ9HCJ1 492 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 TM9SF3Q9HD45 589 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 KCNQ5Q9NR82 932 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 GPRC5BQ9NZH0 403 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 ADGRE2Q9UHX3 823 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 STOML2Q9UJZ1 356 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 MRPS7Q9Y2R9 242 aaKnown RBP13.92□□□□□ -0.18
SHMT2-226ENST00000556825 GRIP1Q9Y3R0 1128 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 AUP1Q9Y679 476 aa13.92□□□□□ -0.18
SHMT2-226ENST00000556825 A0A1W2PRG6 482 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 TCRBV3S1A0A5B6 114 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 KRT87PA6NCN2 255 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 TRDMT1O14717 391 aaKnown RBP13.91□□□□□ -0.18
SHMT2-226ENST00000556825 ZBTB5O15062 677 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 PAPSS1O43252 624 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-226ENST00000556825 ZNF623O75123 536 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 ASS1P00966 412 aaKnown RBP13.91□□□□□ -0.18
SHMT2-226ENST00000556825 APOA1P02647 267 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 SLC4A1P02730 911 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 NPR3P17342 541 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 AXLP30530 894 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 ZNF267Q14586 743 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-226ENST00000556825 LETM2Q2VYF4 491 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 PCGF5Q86SE9 256 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 PLCZ1Q86YW0 608 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 OFCC1Q8IZS5 231 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 ENKURQ8TC29 256 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 APBB2Q92870 758 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 PPWD1Q96BP3 646 aaKnown RBP13.91□□□□□ -0.18
SHMT2-226ENST00000556825 PIP5K1AQ99755 562 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 EPS8L2Q9H6S3 715 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 KIF17Q9P2E2 1029 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 NRCAMQ92823 1304 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 CYP2A6P11509 494 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-226ENST00000556825 ENO3P13929 434 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-226ENST00000556825 PRIM2P49643 509 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 ABCE1P61221 599 aaKnown RBP13.91□□□□□ -0.18
SHMT2-226ENST00000556825 SSTP61278 116 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 VBP1P61758 197 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 UGP2Q16851 508 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 MSS51Q4VC12 460 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 FNBP1LQ5T0N5 605 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 TLK2Q86UE8 772 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 OR4M1Q8NGD0 313 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 SEC22CQ9BRL7 303 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 WDR83Q9BRX9 315 aaKnown RBP13.91□□□□□ -0.18
SHMT2-226ENST00000556825 NECTIN3Q9NQS3 549 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 PNPOQ9NVS9 261 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 PCOLCE2Q9UKZ9 415 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 ZNF330Q9Y3S2 320 aaPredicted RBP13.91□□□□□ -0.18
SHMT2-226ENST00000556825 PTPRFP10586 1907 aa13.91□□□□□ -0.18
SHMT2-226ENST00000556825 ZNFX1Q9P2E3 1918 aaKnown RBP13.9□□□□□ -0.18
SHMT2-226ENST00000556825 E7ESA3 106 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 GOLGA8SH3BPF8 625 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 STX16-NPEPL1H3BU86 382 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 ST8SIA5O15466 376 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 CALUO43852 315 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-226ENST00000556825 AVILO75366 819 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 ETS1P14921 441 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 STMN1P16949 149 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 KELP23276 732 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 NUMBP49757 651 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 FXR2P51116 673 aaKnown RBP eCLIP13.9□□□□□ -0.18
SHMT2-226ENST00000556825 MPP1Q00013 466 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 FSTL1Q12841 308 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 PARP15Q460N3 678 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 VWA5B1Q5TIE3 1220 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 ANGEL2Q5VTE6 544 aaKnown RBP13.9□□□□□ -0.18
SHMT2-226ENST00000556825 MBLAC2Q68D91 279 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 XKRXQ6PP77 449 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 PAGE2Q7Z2X7 111 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 LIX1LQ8IVB5 337 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 CCDC36Q8IYA8 594 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 DHRSXQ8N5I4 330 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 SLC7A14Q8TBB6 771 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 RAET1EQ8TD07 263 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 BIRC7Q96CA5 298 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 RCN3Q96D15 328 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 LRRC39Q96DD0 335 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 MARK4Q96L34 752 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 ROGDIQ9GZN7 287 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 IFT46Q9NQC8 304 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 SNX15Q9NRS6 342 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 FBXL12Q9NXK8 326 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 NRAPQ86VF7 1730 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 LAMB2P55268 1798 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 BTN3A1O00481 513 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 LIASO43766 372 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 KATNA1O75449 491 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 PPM1BO75688 479 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 GABARAPO95166 117 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 ZNF250P15622 560 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 GAP43P17677 238 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 MAGP20916 626 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 IL12RB1P42701 662 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 DEFA1P59665 94 aa13.9□□□□□ -0.18
SHMT2-226ENST00000556825 DEFA3P59666 94 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms