RNA–Protein interactions for RNA: ENST00000545688.5

SNHG1-224, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 3

Gene SNHG1, Length 610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-224ENST00000545688 SPRY4Q9C004 299 aa4.82□□□□□ -1.64
SNHG1-224ENST00000545688 NDRG3Q9UGV2 375 aa4.82□□□□□ -1.64
SNHG1-224ENST00000545688 GDAQ9Y2T3 454 aa4.82□□□□□ -1.64
SNHG1-224ENST00000545688 IFT140Q96RY7 1462 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.81□□□□□ -1.64
SNHG1-224ENST00000545688 ANP32CO43423 234 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 RGS11O94810 467 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 PMS2P2O95744 297 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 CHRM4P08173 479 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 SRD5A1P18405 259 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 PIGAP37287 484 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 ACSM2AQ08AH3 577 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 KRT72Q14CN4 511 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 TAF5Q15542 800 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 PDCD2Q16342 344 aaPredicted RBP4.81□□□□□ -1.64
SNHG1-224ENST00000545688 DSTYKQ6XUX3 929 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 SHFQ7M4L6 423 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 PRSS45Q7RTY3 260 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 FTSJ3Q8IY81 847 aaKnown RBP4.81□□□□□ -1.64
SNHG1-224ENST00000545688 SPPL3Q8TCT6 385 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 NEK9Q8TD19 979 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 MTBPQ96DY7 904 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 HES6Q96HZ4 224 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 CLSTN3Q9BQT9 956 aa4.81□□□□□ -1.64
SNHG1-224ENST00000545688 STN1Q9H668 368 aaKnown RBP4.81□□□□□ -1.64
SNHG1-224ENST00000545688 TAF1P21675 1872 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 hCG_1642624A0A1W2PR95 340 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 TYW5A2RUC4 315 aaKnown RBP4.8□□□□□ -1.64
SNHG1-224ENST00000545688 CBY3A6NI87 242 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 HSPA12AO43301 675 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 SOCS5O75159 536 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 WEE2P0C1S8 567 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 RYKP34925 604 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 HDAC4P56524 1084 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 ARL16Q0P5N6 197 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 ADCK5Q3MIX3 580 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 CES5AQ6NT32 575 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 SMIM29Q86T20 159 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 EXOC3L1Q86VI1 746 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 FOXP4Q8IVH2 680 aaPredicted RBP4.8□□□□□ -1.64
SNHG1-224ENST00000545688 SUGP1Q8IWZ8 645 aaKnown RBP4.8□□□□□ -1.64
SNHG1-224ENST00000545688 ENAHQ8N8S7 591 aaPredicted RBP4.8□□□□□ -1.64
SNHG1-224ENST00000545688 SECTM1Q8WVN6 248 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 RAB40AQ8WXH6 277 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 ZNF385AQ96PM9 386 aaKnown RBP4.8□□□□□ -1.64
SNHG1-224ENST00000545688 OR1F2PQ96R84 312 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.8□□□□□ -1.644e-59■■■□□ 16.1
SNHG1-224ENST00000545688 SLC32A1Q9H598 525 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 RASSF1Q9NS23 344 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 CYSLTR2Q9NS75 346 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 SLC9A2Q9UBY0 812 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 SUFUQ9UMX1 484 aa4.8□□□□□ -1.64
SNHG1-224ENST00000545688 CPED1A4D0V7 1026 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 FAM90A7PA6NKC0 464 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 FAM90A22PA8MWA6 464 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 FAM90A12PA8MX19 464 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 FAM90A23PA8MXZ1 464 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 PEX12O00623 359 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 PER2O15055 1255 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 CEP104O60308 925 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 KDM4BO94953 1096 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 SP1P08047 785 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 AMD1P17707 334 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 EDRF1Q3B7T1 1238 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 ESCO2Q56NI9 601 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 C9orf139Q6ZV77 190 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 MOB3CQ70IA8 216 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 CNOT9Q92600 299 aaKnown RBP4.79□□□□□ -1.64
SNHG1-224ENST00000545688 SH3KBP1Q96B97 665 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 CSF3RQ99062 836 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 MMTAG2Q9BU76 263 aaKnown RBP4.79□□□□□ -1.64
SNHG1-224ENST00000545688 MROH8Q9H579 483 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 NOX4Q9NPH5 578 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 SMARCAL1Q9NZC9 954 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 SLCO3A1Q9UIG8 710 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 PCDHAC2Q9Y5I4 1007 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 SNX9Q9Y5X1 595 aa4.79□□□□□ -1.64
SNHG1-224ENST00000545688 GREB1LQ9C091 1923 aaPredicted RBP4.78□□□□□ -1.64
SNHG1-224ENST00000545688 C17orf113A0A1B0GUU1 675 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 HNRNPCL2B2RXH8 293 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 ERVV-2B6SEH9 535 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 XPNPEP2O43895 674 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 GAGE7O76087 117 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 CLDN14O95500 239 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 CNPP09543 421 aaKnown RBP4.78□□□□□ -1.64
SNHG1-224ENST00000545688 GAGE12FP0CL80 117 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 GAGE12GP0CL81 117 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 GAGE12IP0CL82 117 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 TRAPPC10P48553 1259 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 BRWD1-AS2P59051 145 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 GAGE1Q13065 139 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 GAGE4Q13068 117 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 RUNX2Q13950 521 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 ANKRD45Q5TZF3 282 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 UNQ6126/PRO20091Q6UXV3 157 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 TUBA1AQ71U36 451 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 ZC3HC1Q86WB0 502 aaKnown RBP4.78□□□□□ -1.64
SNHG1-224ENST00000545688 C2CD5Q86YS7 1000 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 HERC6Q8IVU3 1022 aa4.78□□□□□ -1.64
SNHG1-224ENST00000545688 CPXM2Q8N436 756 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms