RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SCUBE2Q9NQ36 999 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 AMACRQ9UHK6 382 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 EFR3BQ9Y2G0 817 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 CAPN6Q9Y6Q1 641 aa20.05■□□□□ 0.8
CPSF1-209ENST00000532725 A0A1W2PR77 199 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 SLC30A4O14863 429 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 TM4SF5O14894 197 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 VILLO15195 856 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 SLC31A1O15431 190 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 HTRA2O43464 458 aaPredicted RBP20.04■□□□□ 0.8
CPSF1-209ENST00000532725 KRT86O43790 486 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 JCHAINP01591 159 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 SDHBP21912 280 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 TGM2P21980 687 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 GRIK2Q13002 908 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 FGL2Q14314 439 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 IHHQ14623 411 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 TEAD4Q15561 434 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 LRRC73Q5JTD7 316 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 ALG1LQ6GMV1 187 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 NAPEPLDQ6IQ20 393 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 KIAA1161Q6NSJ0 714 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 BZW1Q7L1Q6 419 aaKnown RBP20.04■□□□□ 0.8
CPSF1-209ENST00000532725 CCDC50Q8IVM0 306 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 SPOCK2Q92563 424 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 IL12RB2Q99665 862 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 C1QTNF2Q9BXJ5 285 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 HEMGNQ9BXL5 484 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 SLC17A9Q9BYT1 436 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 GUCA1BQ9UMX6 200 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 ITM2BQ9Y287 266 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 ANKRD6Q9Y2G4 727 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 ATP8A1Q9Y2Q0 1164 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 PCDHGC4Q9Y5F7 938 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 PCDH15Q96QU1 1955 aa20.04■□□□□ 0.8
CPSF1-209ENST00000532725 TRPM6Q9BX84 2022 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 IGLON5A6NGN9 336 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 PRAMEF26H0Y7S4 382 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 KCNK1O00180 336 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 NEMP1O14524 444 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 DDX3YO15523 660 aaKnown RBP20.03■□□□□ 0.8
CPSF1-209ENST00000532725 FTCDO95954 541 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 PAK4O96013 591 aaPredicted RBP20.03■□□□□ 0.8
CPSF1-209ENST00000532725 CCDC175P0C221 793 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 PYGMP11217 842 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 PECAM1P16284 738 aaPredicted RBP20.03■□□□□ 0.8
CPSF1-209ENST00000532725 CES1P23141 567 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 CD38P28907 300 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 IFI35P80217 286 aaPredicted RBP20.03■□□□□ 0.8
CPSF1-209ENST00000532725 AP1B1Q10567 949 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 KIF19Q2TAC6 998 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 TMEM52BQ4KMG9 183 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 LAYNQ6UX15 382 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 BBS12Q6ZW61 710 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 CNTD1Q8N815 330 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 TMEM145Q8NBT3 493 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 ARRDC2Q8TBH0 407 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 SEMA3CQ99985 751 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 HERPUD2Q9BSE4 406 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 GTPBP2Q9BX10 602 aaKnown RBP20.03■□□□□ 0.8
CPSF1-209ENST00000532725 POLR1EQ9GZS1 481 aaKnown RBP20.03■□□□□ 0.8
CPSF1-209ENST00000532725 PCDH12Q9NPG4 1184 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 AASDHPPTQ9NRN7 309 aa20.03■□□□□ 0.8
CPSF1-209ENST00000532725 CDV3Q9UKY7 258 aaKnown RBP20.03■□□□□ 0.8
CPSF1-209ENST00000532725 PACSIN2Q9UNF0 486 aaPredicted RBP20.03■□□□□ 0.8
CPSF1-209ENST00000532725 ADAMTS9Q9P2N4 1935 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 MIF4GDA9UHW6 222 aaKnown RBP20.02■□□□□ 0.8
CPSF1-209ENST00000532725 UPK3BL1B0FP48 263 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 UPK3BL2E5RIL1 263 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 RIOK3O14730 519 aaKnown RBP20.02■□□□□ 0.8
CPSF1-209ENST00000532725 PPP1R12AO14974 1030 aaPredicted RBP20.02■□□□□ 0.8
CPSF1-209ENST00000532725 PRLRP16471 622 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 XPAP23025 273 aaPredicted RBP20.02■□□□□ 0.8
CPSF1-209ENST00000532725 PTPN7P35236 360 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 ATXN3P54252 364 aaPredicted RBP20.02■□□□□ 0.8
CPSF1-209ENST00000532725 POLR2LP62875 67 aaKnown RBP20.02■□□□□ 0.8
CPSF1-209ENST00000532725 ITKQ08881 620 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 B4GALNT4Q76KP1 1039 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 ZSCAN30Q86W11 494 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 MINDY1Q8N5J2 469 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 MFSD2AQ8NA29 543 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 OR2I1PQ8NGU4 316 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 ASB12Q8WXK4 309 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 P3H4Q92791 437 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 HES6Q96HZ4 224 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 RTKNQ9BST9 563 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 OSBPL8Q9BZF1 889 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 CA5BQ9Y2D0 317 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 SNX11Q9Y5W9 270 aa20.02■□□□□ 0.8
CPSF1-209ENST00000532725 MMP20O60882 483 aa20.01■□□□□ 0.79
CPSF1-209ENST00000532725 SOCS5O75159 536 aa20.01■□□□□ 0.79
CPSF1-209ENST00000532725 HLA-DQB2P05538 268 aa20.01■□□□□ 0.79
CPSF1-209ENST00000532725 ID4P47928 161 aa20.01■□□□□ 0.79
CPSF1-209ENST00000532725 DSC2Q02487 901 aa20.01■□□□□ 0.79
CPSF1-209ENST00000532725 NIPAL4Q0D2K0 466 aa20.01■□□□□ 0.79
CPSF1-209ENST00000532725 ELP6Q0PNE2 266 aa20.01■□□□□ 0.79
CPSF1-209ENST00000532725 TRAF2Q12933 501 aa20.01■□□□□ 0.79
CPSF1-209ENST00000532725 ZBTB17Q13105 803 aa20.01■□□□□ 0.79
CPSF1-209ENST00000532725 PUM1Q14671 1186 aaKnown RBP eCLIP20.01■□□□□ 0.79
CPSF1-209ENST00000532725 STAT4Q14765 748 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms