RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 NDFIP2Q9NV92 336 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PTPRDP23468 1912 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 AURKAO14965 403 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MATN3O15232 486 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CFLARO15519 480 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 DENRO43583 198 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ENO3P13929 434 aaPredicted RBP16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TPP2P29144 1249 aaPredicted RBP16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 GSTT1P30711 240 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 HOXC13P31276 330 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CHN2P52757 468 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ACLYP53396 1101 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ADGRE1Q14246 886 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CNSTQ6PJW8 725 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 POTEHQ6S545 545 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TICAM1Q8IUC6 712 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 LILRA2Q8N149 483 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 HEXDCQ8WVB3 486 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CENPKQ9BS16 269 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TRIM4Q9C037 500 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MRPL46Q9H2W6 279 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TRMT13Q9NUP7 481 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ST3GAL5Q9UNP4 418 aa16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MRPL42Q9Y6G3 142 aaKnown RBP16.23■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ARL5CA6NH57 179 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TXNDC9O14530 226 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ACOT8O14734 319 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 DNAJA2O60884 412 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 HLA-DQB2P05538 268 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PABPC4LP0CB38 370 aaKnown RBP16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PCSK1P29120 753 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CYP2C18P33260 490 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CHRNA4P43681 627 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SCNN1GP51170 649 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 RFTN1Q14699 578 aaPredicted RBP16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 UPP1Q16831 310 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 AGMOQ6ZNB7 445 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 RNF180Q86T96 592 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PELI3Q8N2H9 469 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MARVELD2Q8N4S9 558 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 RNF148Q8N7C7 305 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 KLHDC9Q8NEP7 349 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SCAMP5Q8TAC9 235 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SGF29Q96ES7 293 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ELMO2Q96JJ3 720 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MRGPRX2Q96LB1 330 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PKMYT1Q99640 499 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SENP6Q9GZR1 1112 aaPredicted RBP16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TRPV6Q9H1D0 765 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 IGSF5Q9NSI5 407 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 NLRC5Q86WI3 1866 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PATJQ8NI35 1801 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 NEMP2A6NFY4 417 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 IRAK2O43187 625 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PAGE1O75459 146 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CAPNS1P04632 268 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SMIM18P0DKX4 95 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ME2P23368 584 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PGFP49763 221 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 GEMP55040 296 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 DNAJB13P59910 316 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 RASIP1Q5U651 963 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 GDF6Q6KF10 455 aaPredicted RBP16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 RANBP10Q6VN20 620 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 HMGCLL1Q8TB92 370 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PTCD2Q8WV60 388 aaKnown RBP16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 HAPLN3Q96S86 360 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 NPAS2Q99743 824 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MRPL57Q9BQC6 102 aaKnown RBP16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 UBE2OQ9C0C9 1292 aaKnown RBP16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 POMKQ9H5K3 350 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 EFCAB1Q9HAE3 211 aa16.22■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SZT2Q5T011 3432 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PRSS51A0A1B0GVH4 220 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQ45 241 aaPredicted RBP16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQY0 241 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 PMPCBO75439 489 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 BCAS2O75934 225 aaPredicted RBP16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 MRPS6P82932 125 aaKnown RBP16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ZNF789Q5FWF6 425 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 SH2D4BQ5SQS7 431 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 RBM20Q5T481 1227 aaKnown RBP16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 KIAA0930Q6ICG6 404 aaPredicted RBP16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ZFP1Q6P2D0 407 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CD300LGQ6UXG3 332 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TRIM67Q6ZTA4 783 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 LRRTM3Q86VH5 581 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TMEM126BQ8IUX1 230 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 BHLHE22Q8NFJ8 381 aaPredicted RBP16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 KLHL32Q96NJ5 620 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TMEM209Q96SK2 561 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 UPF3AQ9H1J1 476 aaKnown RBP16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ATXN3LQ9H3M9 355 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TNFRSF12AQ9NP84 129 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 ENTPD7Q9NQZ7 604 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 UBAP1Q9NZ09 502 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 CLIC5Q9NZA1 410 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 FBXO5Q9UKT4 447 aa16.21■□□□□ 0.19
MSH5-SAPCD1-208ENST00000498473 TNRC18O15417 2968 aaPredicted RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms