RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 SIRPB2Q5JXA9 342 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 RTP2Q5QGT7 225 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 TRAF7Q6Q0C0 670 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 C2CD4AQ8NCU7 369 aaPredicted RBP12.54□□□□□ -0.4
HMGN1-220ENST00000492280 PPFIBP2Q8ND30 876 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 CMTM5Q96DZ9 223 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 TMA16Q96EY4 203 aaKnown RBP12.54□□□□□ -0.4
HMGN1-220ENST00000492280 SLC39A13Q96H72 371 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 DNAJC1Q96KC8 554 aaKnown RBP12.54□□□□□ -0.4
HMGN1-220ENST00000492280 TBATAQ96M53 351 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 ZNF184Q99676 751 aaPredicted RBP12.54□□□□□ -0.4
HMGN1-220ENST00000492280 SEMA3CQ99985 751 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 ZYG11BQ9C0D3 744 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 ENTPD7Q9NQZ7 604 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 IGSF5Q9NSI5 407 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 MARCH2Q9P0N8 246 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 TSR3Q9UJK0 312 aaKnown RBP12.54□□□□□ -0.4
HMGN1-220ENST00000492280 MYO7AQ13402 2215 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 FRMPD3Q5JV73 1810 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 TMEM114B3SHH9 223 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 RAG1P15918 1043 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 SERPINH1P50454 418 aaKnown RBP12.54□□□□□ -0.4
HMGN1-220ENST00000492280 THOP1P52888 689 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 CDH13P55290 713 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 NME5P56597 212 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 AP2B1P63010 937 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 CAPRIN2Q6IMN6 1127 aaKnown RBP12.54□□□□□ -0.4
HMGN1-220ENST00000492280 MON1AQ86VX9 555 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 CNTN4Q8IWV2 1026 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 ZNF683Q8IZ20 524 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 OR7D4Q8NG98 312 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 SIKE1Q9BRV8 207 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 PRDM5Q9NQX1 630 aaPredicted RBP12.54□□□□□ -0.4
HMGN1-220ENST00000492280 SUFUQ9UMX1 484 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 TLR6Q9Y2C9 796 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 THSD7BQ9C0I4 1608 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 CHD7Q9P2D1 2997 aa12.54□□□□□ -0.4
HMGN1-220ENST00000492280 ADAM12O43184 909 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 GPR39O43194 453 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 CABYRO75952 493 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 VNN2O95498 520 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 XRCC1P18887 633 aaPredicted RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 TYMPP19971 482 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 OR1E1P30953 314 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 CYP2C18P33260 490 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 C1QTNF8P60827 252 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 NSUN2Q08J23 767 aaKnown RBP eCLIP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 SEMA3AQ14563 771 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 TCTN1Q2MV58 587 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 AFMIDQ63HM1 303 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 NADSYN1Q6IA69 706 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 POTEHQ6S545 545 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 SLC24A5Q71RS6 500 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 LMNTD2Q8IXW0 634 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 KDM1BQ8NB78 822 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 OR9I1Q8NGQ6 314 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 SREK1Q8WXA9 508 aaKnown RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 BHMTQ93088 406 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 IMP4Q96G21 291 aaKnown RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 NSMCE3Q96MG7 304 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 SLC25A51Q9H1U9 297 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 C1orf21Q9H246 121 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 MRPL46Q9H2W6 279 aaKnown RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 EBF3Q9H4W6 596 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 STN1Q9H668 368 aaKnown RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 S100A14Q9HCY8 104 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 A8MT66 165 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 PRAMEP78395 509 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 MRPS22P82650 360 aaKnown RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 KLC1Q07866 573 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 SFT2D3Q587I9 215 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 KIAA0930Q6ICG6 404 aaPredicted RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 TIGD7Q6NT04 549 aaPredicted RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 CDRT15Q96T59 188 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 FBRSL1Q9HCM7 1045 aaKnown RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 RGS18Q9NS28 235 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 GMPR2Q9P2T1 348 aaKnown RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 ZNF212Q9UDV6 495 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 ANGPTL2Q9UKU9 493 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 ARHGAP26Q9UNA1 814 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 SCML2Q9UQR0 700 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 CDYLQ9Y232 598 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 PCDHB5Q9Y5E4 795 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 COPG1Q9Y678 874 aaKnown RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 SCN5AQ14524 2016 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 F8W8V4 182 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 SIX3O95343 332 aaPredicted RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 YWHAQP27348 245 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 RGRP47804 291 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 AQP4P55087 323 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 SULT2A1Q06520 285 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 POLD3Q15054 466 aaPredicted RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 UGP2Q16851 508 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 HECTD2Q5U5R9 776 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 RNF220Q5VTB9 566 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 LAYNQ6UX15 382 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 RPAINQ86UA6 219 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 LZTR1Q8N653 840 aa12.53□□□□□ -0.4
HMGN1-220ENST00000492280 PCDH20Q8N6Y1 951 aaKnown RBP12.53□□□□□ -0.4
HMGN1-220ENST00000492280 ARRDC2Q8TBH0 407 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms