RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 PRR25Q96S07 402 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 WDR24Q96S15 920 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 TEX13BQ9BXU2 312 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 GLIS2Q9BZE0 524 aaPredicted RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 CIPCQ9C0C6 399 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 PRSS22Q9GZN4 317 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 PDCL3Q9H2J4 239 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 CHMP4BQ9H444 224 aaKnown RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 GBA2Q9HCG7 927 aaPredicted RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 ZBTB26Q9HCK0 441 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 XPNPEP3Q9NQH7 507 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 SELENONQ9NZV5 590 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 NDUFAF4Q9P032 175 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 SUCLA2Q9P2R7 463 aaPredicted RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 HDAC6Q9UBN7 1215 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 CNOT7Q9UIV1 285 aaKnown RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 CA14Q9ULX7 337 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 CCL27Q9Y4X3 112 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 CDY1Q9Y6F8 540 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 ARAP3Q8WWN8 1544 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 WDR17Q8IZU2 1322 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 SIGLEC1Q9BZZ2 1709 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 CDC42BPBQ9Y5S2 1711 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 TRAPPC8Q9Y2L5 1435 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 POC1B-GALNT4F8VUJ3 575 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 H7C1Q1 480 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 PLOD2O00469 737 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 KRT86O43790 486 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 RASAL1O95294 804 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 NTN1O95631 604 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 SNHG28P0DPA3 235 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 CYP2A6P11509 494 aaPredicted RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 HTR7P34969 479 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 GP5P40197 560 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 MTHFRP42898 656 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 RARSP54136 660 aaKnown RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 KRT81Q14533 505 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 NAA25Q14CX7 972 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 PCLAFQ15004 111 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 DAZAP2Q15038 168 aaPredicted RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 HFEQ30201 348 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 MIDNQ504T8 468 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 SH2D4BQ5SQS7 431 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 LIPMQ5VYY2 423 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 KIAA0930Q6ICG6 404 aaPredicted RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 MIS18BP1Q6P0N0 1132 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 SERPINA13PQ6UXR4 307 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 OTOAQ7RTW8 1153 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 KRT73Q86Y46 540 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 FIBINQ8TAL6 211 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 DEPDC1BQ8WUY9 529 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 MRPS27Q92552 414 aaKnown RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 MR1Q95460 341 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 RMDN1Q96DB5 314 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 KIF1BPQ96EK5 621 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 RNFT2Q96EX2 444 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 FAM227BQ96M60 508 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 CMTM3Q96MX0 182 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 RUNDC3BQ96NL0 473 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 SNX18Q96RF0 628 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 C17orf80Q9BSJ5 609 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 SYT17Q9BSW7 474 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 FSD1Q9BTV5 496 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 THUMPD3Q9BV44 507 aaKnown RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 CTDSP1Q9GZU7 261 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 INTS2Q9H0H0 1204 aaKnown RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 TAOK3Q9H2K8 898 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 SLC32A1Q9H598 525 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 ZSCAN32Q9NX65 697 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 MRPL15Q9P015 296 aaKnown RBP3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 KLHL13Q9P2N7 655 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 EPS15L1Q9UBC2 864 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 MORF4L1Q9UBU8 362 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 FETUBQ9UGM5 382 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 ANAPC5Q9UJX4 755 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 PCDHGA5Q9Y5G8 931 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 PCDHGA1Q9Y5H4 931 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 PCDHA10Q9Y5I2 948 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 CFAP43Q8NDM7 1665 aa3.33□□□□□ -1.88
DEPDC1-204ENST00000489862 NCOA2Q15596 1464 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 LRRC9Q6ZRR7 1453 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 MBD5Q9P267 1494 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 TIAM1Q13009 1591 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 SCAPERQ9BY12 1400 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 YEATS2Q9ULM3 1422 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 CYP2D7A0A087X1C5 515 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 LOC105369274A0A096LPK9 316 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 LOC102723532A0A0G2JNH3 316 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 TCRBV5S1A1TA0A578 114 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 K7EPI3 171 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 DDX39AO00148 427 aaKnown RBP3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 PPEF2O14830 753 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 INSIG1O15503 277 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 SLCO2B1O94956 709 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 GCNT3O95395 438 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 CHN1P15882 459 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 PTPN2P17706 415 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 MCM3P25205 808 aa3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 PSMA4P25789 261 aaKnown RBP3.32□□□□□ -1.88
DEPDC1-204ENST00000489862 SLC5A2P31639 672 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms